BAC Information

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BAC

Clone NameB6Ng01-157F19
ChromosomeX (Build37)X (Build37)
Map Location 52,763,961 - 52,764,61852,443,531 - 52,444,149
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040867, LOC100040894, LOC666122, LOC666135, LOC100038960, EG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210
Downstream geneLOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157F19.bB6Ng01-157F19.g
ACCDH951617DH951618
length9601,063
definitionDH951617|Mus musculus domesticus DNA, BAC clone: B6Ng01-157F19, 5' end.DH951618|Mus musculus domesticus DNA, BAC clone: B6Ng01-157F19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,763,961 - 52,764,618)(52,443,531 - 52,444,149)
sequence
gaattccaaggttcatgacactattttattcctgaagccaggcaatagtt
tatacccccctagtccaattaacactaaggtgtgaaactcttgcctggtg
cagggctgatctgaagcaggtgctaatctctagtgtaaacacagaccttt
tgaagtcactcctcttgcatctggagatatactaatccctagcgtaaaca
tttatctggttcctgcaaattctttttctagtcactcctctggcacctgg
aaaacttcattgtaccgtatctgttatgttttacaatttatgatattcgc
tgtaatataattagtctaatctcaaccagaaaattacattcagatccaac
accactcttgcatgtttgtctatttgtcaccccatccgactctttgcaca
tctgcttaagagatcccgctccatgcacacacagggacccagagtgtctg
tggcaattggcgcctgaacagggacatcccggcagattagtctttttttt
tctctttttttttcttcctattctttattttctcaggcaaagataggtac
ttgccgtgaccatgctgtagacgggcagacctgtgtaggcgttaaaaaga
cgagtaagtttttatcatggggcagtcagaatcaaaagggaaaaattgtt
cctctcagtgtttaagcacatgttgtctggaagaagcctaaaggtctcgg
ataaattttataatttcatgcaaaaaatcagttcctggtttccacaggag
ggaagcttaacattgcaggattggaagcaagtaggtagaatgcttcctcc
ctcagaagggactaatatattaataaaacaattggcttggggatatgtga
ataccttgtgccaaaacctgaacagaccaatccataagacaagttcccta
ccagattatattaaaacatgtgtagatgccttaccggccataatgcagag
attgcttaag
gaattcctcctgtaggggccagagagaataaaacagggcatcccccgatt
tctctctgtccctgggaaaattctaaaatccattttcttttagcccttct
tttccttttctgcttgtaagagacaggttgtcaaaccaaggttaaaatcc
aaaattttctaacagcttctgtcaagcatccaaacttctaatttattcaa
tctgagggctatttttttgagaaaacacacaatcactatacattgaatgt
ctcaaatagcctaaaggtttaccatgctgaagcttttttgaagccatcat
cggtccacaataagtcagatattttatagtcatctctaaaaatgctattt
tctgtaaccaacaaaaataccatttatggaatgaattatatatgtttttg
gagatgacttaacttttaataaagccttttaatgaatttttagcacaatg
taggattgggaaattgtaaataaggtaacagtaagaagtgacctatattt
tgacttttatgaagtctcttttttatactttgaccataatttaaccataa
ctcttaattttatctaaagtatcagaatccacaacttgaagtttttccta
taactggagctgtgtcctataatgagctccacagttcctgaacggtgcta
agagactgcccctttagttttttgccttacctgcttttttagtgagtgga
gtaccacccttgtgaaactttgatttacactcatttttccaatgtcttcc
tttgccatatcgtgggcagggacccaaaggaacgtttttcttatttcctg
agagattcttacaatcttttctcaggtgccctggtttttttaaaccgaaa
catgtaattccacacatagcgcttaatttcttcccttttccttgctgtgg
cttaagcaatctcctgcattatggccggtaaggcatctacacatgtttat
atatctggtaggacttgtcttatggattgtctgtcagtttggcacagtat
tcacatatcccagcattgtttatatatatagtcccttctgaggaggagca
tctactacttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_52763961_52764618
seq2: B6Ng01-157F19.b_47_992 (reverse)

seq1  TGCATTATGGCCGGTGAGGCATCTACACATGTTTTAATATAATCTTGTAG  50
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  TGCATTATGGCCGGTAAGGCATCTACACATGTTTTAATATAATCTGGTAG  50

seq1  GGAACTTGTCTTATGGGTTGGTCTGTTCAGGTTTTGGCACAAGGTATTCA  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGAACTTGTCTTATGGATTGGTCTGTTCAGGTTTTGGCACAAGGTATTCA  100

seq1  CGTATCCCCAAGCCAATTGTTTTATTAATATATTAGTCCCTTCTGAGGGA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCCAAGCCAATTGTTTTATTAATATATTAGTCCCTTCTGAGGGA  150

seq1  GGAAGCATCCTACCTACTTGCTTCCAATCCTGCAATGTTAAGCTTCCCTC  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATTCTACCTACTTGCTTCCAATCCTGCAATGTTAAGCTTCCCTC  200

seq1  CTCTGGAAACCAGGAACTGATTTTTTGCATGAAATTATAAAATTTATGTG  250
      || ||||||||||||||||||||||||||||||||||||||||||||  |
seq2  CTGTGGAAACCAGGAACTGATTTTTTGCATGAAATTATAAAATTTATCCG  250

seq1  AGACCTTTAGGCTTCTGCCAGACAACATGTGCTTAAACACTGAGAGGAAC  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGACCTTTAGGCTTCTTCCAGACAACATGTGCTTAAACACTGAGAGGAAC  300

seq1  AATTTTTTCCCTTTTGATTCTGACTGCCCCATGATAAAAACTTACTCGTC  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TTTTTCCCTTTTGATTCTGACTGCCCCATGATAAAAACTTACTCGTC  349

seq1  TTTTTAACGGCTGCGCAGGTCTGCCCGTCTACAGCACGGTCACGGCAAGG  400
      ||||||||| || | ||||||||||||||||||||| |||||||||||| 
seq2  TTTTTAACGCCTACACAGGTCTGCCCGTCTACAGCATGGTCACGGCAAGT  399

seq1  TCCTATCTTTGCCTGAGAAAATAAAGAATAGAAAGAAAAATGAAAGAGAA  450
       |||||||||||||||||||||||||||||| ||||||||  ||||||||
seq2  ACCTATCTTTGCCTGAGAAAATAAAGAATAGGAAGAAAAA-AAAAGAGAA  448

seq1  AAAGAAAGACTAATCTGCCCGGATGTCCCTGTTCGGGCGCCAACTGCCGG  500
      ||| ||||||||||||||| |||||||||||||| |||||||| ||||  
seq2  AAAAAAAGACTAATCTGCCGGGATGTCCCTGTTCAGGCGCCAATTGCCAC  498

seq1  AGACACTCTGGGTCC-----------------------------------  515
      |||||||||||||||                                   
seq2  AGACACTCTGGGTCCCTGTGTGTGCATGGAGCGGGATCTCTTAAGCAGAT  548

seq1  --------------------------------------------------  515
                                                        
seq2  GTGCAAAGAGTCGGATGGGGTGACAAATAGACAAACATGCAAGAGTGGTG  598

seq1  --------------------------------------------------  515
                                                        
seq2  TTGGATCTGAATGTAATTTTCTGGTTGAGATTAGACTAATTATATTACAG  648

seq1  --------------------------------------------------  515
                                                        
seq2  CGAATATCATAAATTGTAAAACATAACAGATACGGTACAATGAAGTTTTC  698

seq1  --------------------------------------------------  515
                                                        
seq2  CAGGTGCCAGAGGAGTGACTAGAAAAAGAATTTGCAGGAACCAGATAAAT  748

seq1  --------------------------------------------------  515
                                                        
seq2  GTTTACGCTAGGGATTAGTATATCTCCAGATGCAAGAGGAGTGACTTCAA  798

seq1  -----CTGTGTTTACATTAGAGATTAGCACCTGCTTCGGATCAGCCCTGC  560
           ||||||||||| |||||||||||||||||||| ||||||||||||
seq2  AAGGTCTGTGTTTACACTAGAGATTAGCACCTGCTTCAGATCAGCCCTGC  848

seq1  ACCAGGCAAGAGTTTCACACCTTAGTGTTAATTGGGCTAGGGGGGTATAA  610
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCAGGCAAGAGTTTCACACCTTAGTGTTAATTGGACTAGGGGGGTATAA  898

seq1  ACTATTGCCTGGCTTCAGGAATAAAATAGTGTCATGAATCTTGGAATT  658
      |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTATTGCCTGGCTTCAGGAATAAAATAGTGTCATGAACCTTGGAATT  946

seq1: chrX_52443531_52444149
seq2: B6Ng01-157F19.g_532_1128

seq1  TAAATAAGGTAACAGTAAGAAGTGACCTATATTTTGACTTTTATGAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGGTAACAGTAAGAAGTGACCTATATTTTGACTTTTATGAAGTC  50

seq1  TCTTTTTTATACTTTGACCATAATTTAACCATAACTCTTAATTTTATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATACTTTGACCATAATTTAACCATAACTCTTAATTTTATCTA  100

seq1  AAGTATCAGAATCCACAACTTGAAGTTTTTCCTATAACTGGAGCTGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCAGAATCCACAACTTGAAGTTTTTCCTATAACTGGAGCTGTGTC  150

seq1  CTATAATGAGCTCCACAGTTCCTGAACGGTGCTAAGAGACTGCCCCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGAGCTCCACAGTTCCTGAACGGTGCTAAGAGACTGCCCCTTTA  200

seq1  GTTTTTTGCCTTACCTGCTTTTTTAGTGAGTGGAGTACCACCCTTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGCCTTACCTGCTTTTTTAGTGAGTGGAGTACCACCCTTGTGAA  250

seq1  ACTTTGATTTACACTCATTTTTCCAATGTCTTCCTTTGCCATATCATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTTTGATTTACACTCATTTTTCCAATGTCTTCCTTTGCCATATCGTGGG  300

seq1  CAGGGACCCAAAGGAACGTTTTTCTTATTTCCTGAGAGATTCTTACAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACCCAAAGGAACGTTTTTCTTATTTCCTGAGAGATTCTTACAATC  350

seq1  TTTTCTCAGGTGCCCTGGTTTTTTTAAACCGAAACATGTAATTCCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGGTGCCCTGGTTTTTTTAAACCGAAACATGTAATTCCACACA  400

seq1  TAGCGCTTAATTTCTTCCC-TTTCCTTGCTGTGGCATAAGCAATCTCCTG  449
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TAGCGCTTAATTTCTTCCCTTTTCCTTGCTGTGGCTTAAGCAATCTCCTG  450

seq1  CATTATGGCCGGTGAGGCATCTACACATGTTTTAATATAATCTTGTAGGG  499
      ||||||||||||| ||||||||||||||||||  |||| |||| ||||| 
seq2  CATTATGGCCGGTAAGGCATCTACACATGTTT--ATAT-ATCTGGTAGG-  496

seq1  AACTTGTCTTATGGATTGGTCTGTTCAGGTTTTGGCACATGGTATTCACA  549
       |||||||||||||||| ||||| ||||  |||||||||  |||||||||
seq2  -ACTTGTCTTATGGATT-GTCTG-TCAG--TTTGGCACA--GTATTCACA  539

seq1  TATCCCCAAGCCAATTGGTTTATTAATATATATGTCCCTTCTGAGGGAGG  599
      ||||||  |||  ||| ||||||  ||||||| ||||||||||| |||||
seq2  TATCCC--AGC--ATT-GTTTAT--ATATATA-GTCCCTTCTGA-GGAGG  580

seq1  AAGCATCCTACCTACTTGCT  619
       ||||| ||| |||||||||
seq2  -AGCAT-CTA-CTACTTGCT  597