BAC Information

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BAC

Clone NameB6Ng01-158B21
ChromosomeX (Build37)X (Build37)
Map Location 138,416,008 - 138,417,122137,680,620 - 137,681,024
singlet/doubletsingletsinglet
Overlap geneLOC622901
Upstream geneVsig1, Psmd10, Atg4a, LOC100038961, Col4a6, Col4a5, Irs4, LOC633596, EG666488
Downstream geneEG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235, Tmem164, Ammecr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158B21.bB6Ng01-158B21.g
ACCDH952161DH952162
length1,102898
definitionDH952161|Mus musculus domesticus DNA, BAC clone: B6Ng01-158B21, 5' end.DH952162|Mus musculus domesticus DNA, BAC clone: B6Ng01-158B21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(138,416,008 - 138,417,122)(137,680,620 - 137,681,024)
sequence
gaattcatgaagattccactaactgtcactgcctctctgagctccttctc
tatcacacctctcagtctggagatgatatgactttcctgtcagagtatgt
gtcttgcatgaaggagaccaagaagtccatctactatatcactggagaga
gcaaagagcaagtggccaacactgcctttgtggagcgtgtgaggaagtag
ggctttgaggtggtgtaaatgactaagcctagtgatgaggactgtgtgca
gcagctcaaggagtttgatgggaagagtctggtctcggtgactaaggagg
gccgggagctaccagagcatgaggaagagaagaagaaaatagaggagagc
aaggtaaagtttgagaatctctgcaagctcctgaaagagctcttggagaa
gaaggttgaaaaagtgacaatctccaataggcttgtatcttcaccctgct
gcattgtgacaagcacctatagctggacagtcaacatggagcagatcatg
aaggccctggcactgtgaaacaactctacgatgggctacatgatggccaa
aaaacacctggtgttaaaccctgactaccccatcgtggaaaccctgcagc
agaaggctgaggcagacaaaaacgacaaagctgccaagaacctggtggtg
ctgctgtttgaaactgctctgctctcttctggtttctcacttgaggatcc
ccaaacccactccaactgcatctaccacatgattaaactaggcctgggca
tcgatgaagatgaggtcactgcagaggagcccagtgctgctgttcctgat
gagatccccccactggaaggtgatgagaatgcctcgagcatggaagaagt
ggattagagactcctggaggccctgccctctgtatagtacccctgtggct
cccccagcagccctgactgggcctaacccacctggctctctgctcatgtc
tacagaacctttatcctgtcctgtgccttaaggcaagaagatctcctccc
acaggatagcaggatggatgttgtgtatgtggtttttgttgctttatttg
tctgaattaaagttgccaaataataaaaaaagaaaaacagccatttaata
aa
ttcctttacttaaaactgtactcagatgtttgttttaaatgatattctgt
tgcctacaagcacacattgctagaacactcatattggatattttccttaa
gtgtggctttataaggttaagcaaaagaaatcctccaggtttcttaggat
tctaaatgtgggaaccttatgttcctgtcttagtcagggtttctattcct
gtacaaacatcatgaccaagaagcaagttggggaggaaagggtttattcg
acttacacttccatactgctgttcatcaccaaaggaagtcaggactggaa
ctcaagcaggtcaggaagcaggagctgatgcagaggccatggagggatgt
tctttactggcttgcttcccctggcttgttcagcctgctctcttaaagaa
ccaagactatcagcccagaaatggtcccactcacaaggggcctttcccca
ttgaccactaattgagataatgccttacagttggatctcatggaggcatt
tcttcaactgaagctcctctctctgtgataactccagctgtgtcaagttg
acacaaaactacccaatacaattgaccccttgtcaacgtgacacacaaac
acatcactactaagcctcaacccttacattcttattcatcccgaagggtc
taaataactttaaacatcccacagtctttacatattcttaaaatttcaat
ctctttaaaatatccatctcttttaaaatccaaagtctttttacaattaa
aagtctcttaactgtgggctccactaaaatagtttcttccttcagaggga
aaataccagggcacagtcacaatcaaagcaaaaataaatctccaccatcc
aatgtctgggatccaactcacgatcttctgggctcctccaagggcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_138416008_138417122
seq2: B6Ng01-158B21.b_41_1142

seq1  GAATTCATGAAGATTCCACTAACTGTCACTGCCTCTCTGAGCTCCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAGATTCCACTAACTGTCACTGCCTCTCTGAGCTCCTTCTC  50

seq1  TATCACACCTCTCAGTCTGGAGATGATATGACTTTCCTGTCAGAGTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACACCTCTCAGTCTGGAGATGATATGACTTTCCTGTCAGAGTATGT  100

seq1  GTCTTGCATGAAGGAGACCAAGAAGTCCATCTACTATATCACTGGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCATGAAGGAGACCAAGAAGTCCATCTACTATATCACTGGAGAGA  150

seq1  GCAAAGAGCAAGTGGCCAACACTGCCTTTGTGGAGCGTGTGAGGAAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGCAAGTGGCCAACACTGCCTTTGTGGAGCGTGTGAGGAAGTAG  200

seq1  GGCTTTGAGGTGGTGTAAATGACTAAGCCTAGTGATGAGGACTGTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGAGGTGGTGTAAATGACTAAGCCTAGTGATGAGGACTGTGTGCA  250

seq1  GCAGCTCAAGGAGTTTGATGGGAAGAGTCTGGTCTCGGTGACTAAGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCAAGGAGTTTGATGGGAAGAGTCTGGTCTCGGTGACTAAGGAGG  300

seq1  GCCGGGAGCTACCAGAGCATGAGGAAGAGAAGAAGAAAATAGAGGAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGAGCTACCAGAGCATGAGGAAGAGAAGAAGAAAATAGAGGAGAGC  350

seq1  AAGGTAAAGTTTGAGAATCTCTGCAAGCTCCTGAAAGAGCTCTTGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAGTTTGAGAATCTCTGCAAGCTCCTGAAAGAGCTCTTGGAGAA  400

seq1  GAAGGTTGAAAAAGTGACAATCTCCAATAGGCTTGTATCTTCACCCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTGAAAAAGTGACAATCTCCAATAGGCTTGTATCTTCACCCTGCT  450

seq1  GCATTGTGACAAGCACCTATAGCTGGACAGTCAACATGGAGCAGATCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGACAAGCACCTATAGCTGGACAGTCAACATGGAGCAGATCATG  500

seq1  AAGGCCCTGGCACTGTGAAACAACTCTACGATGGGCTACATGATGGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTGGCACTGTGAAACAACTCTACGATGGGCTACATGATGGCCAA  550

seq1  AAAACACCTGGTGTTAAACCCTGACTACCCCATCGTGGAAACCCTGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCTGGTGTTAAACCCTGACTACCCCATCGTGGAAACCCTGCAGC  600

seq1  AGAAGGCTGAGGCAGACAAAAACGACAAAGCTGCCAAGAACCTGGTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGAGGCAGACAAAAACGACAAAGCTGCCAAGAACCTGGTGGTG  650

seq1  CTGCTGTTTGAAACTGCTCTGCTCTCTTCTGGTTTCTCACTTGAGGATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTTGAAACTGCTCTGCTCTCTTCTGGTTTCTCACTTGAGGATCC  700

seq1  CCAAACCCACTCCAACTGCATCTACCACATGATTAAACTAGGCCTGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCACTCCAACTGCATCTACCACATGATTAAACTAGGCCTGGGCA  750

seq1  TCGATGAAGATGAGGTCACTGCAGAGGAGCCCAGTGCTGCTGTTCCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGAAGATGAGGTCACTGCAGAGGAGCCCAGTGCTGCTGTTCCTGAT  800

seq1  GAGATCCCCCCACTGGAAGGTGATGAGAATGCCTCGAGCATGGAAGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCCCCCACTGGAAGGTGATGAGAATGCCTCGAGCATGGAAGAAGT  850

seq1  GGATTAGAGACTCCTGGAGGCCCTGCCCTCTGTATAGTACCCCTGTGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGAGACTCCTGGAGGCCCTGCCCTCTGTATAGTACCCCTGTGGCT  900

seq1  CCCCCAGCAGCCCTGACT-GGCCTAACCCACCTGGCTCTCTGCTCATGTC  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCCCAGCAGCCCTGACTGGGCCTAACCCACCTGGCTCTCTGCTCATGTC  950

seq1  TACAAGAACCTTTTATCCTGTCCTGTGCCTTAAGGCAAGAAGATCTCCTC  999
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAC-AGAACC-TTTATCCTGTCCTGTGCCTTAAGGCAAGAAGATCTCCTC  998

seq1  CCACAGAATAGCAGGGTTGGATGTTGTGTATTGTGTTTTTTGTTTGCTTT  1049
      |||||| |||||| || ||||||||||||| |||| |||||| |||||||
seq2  CCACAGGATAGCA-GGATGGATGTTGTGTA-TGTGGTTTTTG-TTGCTTT  1045

seq1  ATTTTGTTCTGAAATTAAAAGTATGCAAAATAAATTAAAAAAAAGAAAAA  1099
      ||||   ||||||  | ||||| ||| ||||||    |||||||||||||
seq2  ATTT--GTCTGAA--TTAAAGT-TGCCAAATAA---TAAAAAAAGAAAAA  1087

seq1  CAAGCCATTTAATAAA  1115
      | ||||||||||||||
seq2  C-AGCCATTTAATAAA  1102

seq1: chrX_137680620_137681024
seq2: B6Ng01-158B21.g_302_707

seq1  ATGTGGGAACCTTATGTTCCTGTCTTAGTCAGGGTTTCTATTACTGTACA  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGTGGGAACCTTATGTTCCTGTCTTAGTCAGGGTTTCTATTCCTGTACA  50

seq1  AACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGACTTA  100

seq1  CACTTCCATACTGCTGTTCATCACC-AAGGAAGTCAGGACTGGAACTCAA  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAA  150

seq1  GCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTT  200

seq1  ACTGGCTTGCCTCACCTGGCTTACTCAGCCTGCTTTCTTATAGAACCAAG  249
      |||||||||| || ||||||||  |||||||||| ||||| |||||||||
seq2  ACTGGCTTGCTTCCCCTGGCTTGTTCAGCCTGCTCTCTTAAAGAACCAAG  250

seq1  ACTACCAGCCCTGAGATGGTCTCACCCACAAGGGGCCTTTCCCCCTTGAT  299
      |||| |||||| || |||||| ||| |||||||||||||||||| |||| 
seq2  ACTATCAGCCCAGAAATGGTCCCACTCACAAGGGGCCTTTCCCCATTGAC  300

seq1  CACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTC  349
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  CACTAATTGAGATAATGCCTTACAGTTGGATCTCATGGAGGCATTTCTTC  350

seq1  AACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACA  399
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGCTCCTCTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACA  400

seq1  AAACTA  405
      ||||||
seq2  AAACTA  406