BAC Information

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BAC

Clone NameB6Ng01-159F14
Chromosome4 (Build37)X (Build37)
Map Location 46,296,691 - 46,297,86712,410,917 - 12,411,282
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFrmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379
Downstream geneLOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159F14.bB6Ng01-159F14.g
ACCDH953037DH953038
length1,166195
definitionDH953037|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F14, 5' end.DH953038|Mus musculus domesticus DNA, BAC clone: B6Ng01-159F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,296,691 - 46,297,867)(12,410,917 - 12,411,282)
sequence
gaattcaccaccaccttcctaaagggtcatcttcgggaccaagcttttaa
taccaagacatttgttgggcattccaactcaggggaattacaaatcaaaa
ccacagtaaaaagccaacctcacctctgtcaagacagctgctatcagaag
agtcaaaggataaccaattttttgaattttgagaaagcaagcttttacag
ggctggggggaacgtaactaagcatcgcaactttagaacgcaatttggag
tttcctctcaaaattaaaactgatgctgttattgggcctagcacttgggt
ctctgcatggagacccaagggagctgaaatcagtgtcagagtagcccagg
gagagcacgcagaagcaaacaagagctttcaattcatagatggtttaaaa
aaaatataaagtgacatttttttcggactccaaaaagggaaggagtttct
gccacctgcagaaactcagaaagcgtgctcagtgaaacaaggcaaaccca
gaaagacccacactgcatggcctctcgtggatgtggaatccagaaaggac
tgaacttagaaagtgacaagaatagacaggtagttaccagggactgggag
gtggttgcaaaaagagagcattggtccaaggcacaaactttaatctataa
catcactaagttctggtgccctactgaatagcatcacactgtagttatta
ataatgtattgagtacttaaaattaaaaaaaaacactttaagtgttctac
acttacacccctatatacacacaaaagtaactgcgaggccagtgagtatt
tatttcagttagcctgatcgcagcaatcattttacagtatacacacatac
caacataccaaagcagacagtgcatgccttaaattcaatttttaggaggg
aggacatcccggacacagactgtataaaatagaaataatttaaaaattca
tttttattagtcaatctattttaaaatcaaagtatgattgagaccacatt
atgtacatgtatgaaaatgtcattatacaccactgtggtatatatatatg
ctaataaaaatattagatcaaatagtagcaatttgatcctgctatatagg
tctgtgtggaaagaaacaactcaagatcagtccaaggagcctaggggaac
tgctttggagatgagg
caggccagcctggtctacagagtgagtttcagaacagatagggctatact
gaaaaaccctgtctcaaaaatcaaacaaacaaaagaccaatttacaaact
acataacgtcagggacttcctttttttaggttttttgtttgtttgtttgt
tttgttttgttttttgtttatttgttttttgtttgttttttgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_46296691_46297867
seq2: B6Ng01-159F14.b_49_1214

seq1  GAATTCACCACCACCTTCCTAAAGGGTCATCTTCGGGACCAAGCTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACCACCTTCCTAAAGGGTCATCTTCGGGACCAAGCTTTTAA  50

seq1  TACCAAGACATTTGTTGGGCATTCCAACTCAGGGGAATTACAAATCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGACATTTGTTGGGCATTCCAACTCAGGGGAATTACAAATCAAAA  100

seq1  CCACAGTAAAAAGCCAACCTCACCTCTGTCAAGACAGCTGCTATCAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTAAAAAGCCAACCTCACCTCTGTCAAGACAGCTGCTATCAGAAG  150

seq1  AGTCAAAGGATAACCAATTTTTTGAATTTTGAGAAAGCAAGCTTTTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGGATAACCAATTTTTTGAATTTTGAGAAAGCAAGCTTTTACAG  200

seq1  GGCTGGGGGGAACGTAACTAAGCATCGCAACTTTAGAACGCAATTTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGGAACGTAACTAAGCATCGCAACTTTAGAACGCAATTTGGAG  250

seq1  TTTCCTCTCAAAATTAAAACTGATGCTGTTATTGGGCCTAGCACTTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCAAAATTAAAACTGATGCTGTTATTGGGCCTAGCACTTGGGT  300

seq1  CTCTGCATGGAGACCCAAGGGAGCTGAAATCAGTGTCAGAGTAGCCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATGGAGACCCAAGGGAGCTGAAATCAGTGTCAGAGTAGCCCAGG  350

seq1  GAGAGCACGCAGAAGCAAACAAGAGCTTTCAATTCATAGATGGTTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCACGCAGAAGCAAACAAGAGCTTTCAATTCATAGATGGTTTAAAA  400

seq1  AAAATATAAAGTGACATTTTTTTCGGACTCCAAAAAGGGAAGGAGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAAGTGACATTTTTTTCGGACTCCAAAAAGGGAAGGAGTTTCT  450

seq1  GCCACCTGCAGAAACTCAGAAAGCGTGCTCAGTGAAACAAGGCAAACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTGCAGAAACTCAGAAAGCGTGCTCAGTGAAACAAGGCAAACCCA  500

seq1  GAAAGACCCACACTGCATGGCCTCTCGTGGATGTGGAATCCAGAAAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCCACACTGCATGGCCTCTCGTGGATGTGGAATCCAGAAAGGAC  550

seq1  TGAACTTAGAAAGTGACAAGAATAGACAGGTAGTTACCAGGGACTGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAGAAAGTGACAAGAATAGACAGGTAGTTACCAGGGACTGGGAG  600

seq1  GTGGTTGCAAAAAGAGAGCATTGGTCCAAGGCACAAACTTTAATCTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCAAAAAGAGAGCATTGGTCCAAGGCACAAACTTTAATCTATAA  650

seq1  CATCACTAAGTTCTGGTGCCCTACTGAATAGCATCACACTGTAGTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTAAGTTCTGGTGCCCTACTGAATAGCATCACACTGTAGTTATTA  700

seq1  ATAATGTATTGAGTACTTAAAATTAAAAAAAAACACTTTAAGTGTTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTATTGAGTACTTAAAATTAAAAAAAAACACTTTAAGTGTTCTAC  750

seq1  ACTTACACCCCTATATACACACAAAAGTAACTGCGAGGCCAGTGAGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACACCCCTATATACACACAAAAGTAACTGCGAGGCCAGTGAGTATT  800

seq1  TATTTCAGTTAGCCTGATCGCAGCAATCATTTTACAGTATACACACATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGTTAGCCTGATCGCAGCAATCATTTTACAGTATACACACATAC  850

seq1  CAACATACCAAAGCAGACAGTGCATGCCTTAAATTCAATTTTTAAGGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAACATACCAAAGCAGACAGTGCATGCCTTAAATTCAATTTTT-AGGAGG  899

seq1  GAGGACAT-CCGGACACAGACTGTATAAAAATAGAAATAATTTAAAAATT  949
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  GAGGACATCCCGGACACAGACTGTAT-AAAATAGAAATAATTTAAAAATT  948

seq1  CAATTTTTATTAGTCAATCTTAATTTTAAAATCAAAAGTATGATTGAGA-  998
      | ||||||||||||||||||  ||||||||||| ||||||||||||||| 
seq2  C-ATTTTTATTAGTCAATCT--ATTTTAAAATC-AAAGTATGATTGAGAC  994

seq1  CACATTATGTACATGTATGAAAATGTCATTATACAACCAACTGT-GTATA  1047
      |||||||||||||||||||||||||||||||||||  | ||||| |||||
seq2  CACATTATGTACATGTATGAAAATGTCATTATACA--CCACTGTGGTATA  1042

seq1  ATTAATATATGCTAATAAAAATATTTAGATCAAATAGTAGCAATTTGATC  1097
          ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ---TATATATGCTAATAAAAATA-TTAGATCAAATAGTAGCAATTTGATC  1088

seq1  CTGCCATATAGGTCTGT---GGAAGAAACACACCAAAGGAATCAGTCAAA  1144
      |||| ||||||||||||   | |||||||| ||  |||  ||||||| ||
seq2  CTGCTATATAGGTCTGTGTGGAAAGAAACA-ACTCAAG--ATCAGTCCAA  1135

seq1  AGAGCTAAGGGGAAACTGCTTTTGGAGTTGAGG  1177
       ||||  ||||| |||||| ||||||| |||||
seq2  GGAGCCTAGGGG-AACTGC-TTTGGAGATGAGG  1166

seq1: chrX_12410917_12411282
seq2: B6Ng01-159F14.g_72_265 (reverse)

seq1  TCTCAAAAAACA--------------AAACAAAAAACAAAACAAAACAAA  36
      ||||||||||||              ||||||||||||||||||||||||
seq2  TCTCAAAAAACAAACAAAAAACAAATAAACAAAAAACAAAACAAAACAAA  50

seq1  AATCTTCTTTGTTAATATGTGTGCTTAAAACCTATATAAA----------  76
       |           || |      |  |||||||| | |||          
seq2  CA-----------AACA----AACAAAAAACCTAAAAAAAGGAAGTCCCT  85

seq1  -----AATGTCTTTTTT-------TTTTTTTTTTTTTTTTTTTTTGAGAC  114
            ||||  ||| |       | |||| ||| |||  ||||||||||
seq2  GACGTTATGTAGTTTGTAAATTGGTCTTTTGTTTGTTTGATTTTTGAGAC  135

seq1  AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGAAACTCACTCTGTAGTCCA  164
      ||||||| || ||||||||||  |||| |||||||||||||||||| |||
seq2  AGGGTTTTTCAGTATAGCCCTATCTGTTCTGAAACTCACTCTGTAGACCA  185

seq1  GGCTGGCCTCGAACTCAGAAATCCGCCTGTCTCTGCCTCCCAAGTGCTGG  214
      |||||||||                                         
seq2  GGCTGGCCT-----------------------------------------  194

seq1  GATTAAAGGTGTGTGTCACCACCGCCTGTCTTTTTTTTTATTTGTTTTTT  264
                                                        
seq2  --------------------------------------------------  194

seq1  GGTTTGGGGTTTTTTTTGGGGGGGGGAGGGGAGTGTTCGAGACAGGGTTT  314
                                                        
seq2  --------------------------------------------------  194

seq1  CTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCTGGC  364
                                                        
seq2  --------------------------------------------------  194

seq1  CT  366
        
seq2  --  194