BAC Information

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BAC

Clone NameB6Ng01-160D21
Chromosome10 (Build37)X (Build37)
Map Location 104,054,131 - 104,054,674159,182,992 - 159,183,891
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160D21.bB6Ng01-160D21.g
ACCDH953672DH953673
length1,095897
definitionDH953672|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D21, 5' end.DH953673|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,054,131 - 104,054,674)(159,182,992 - 159,183,891)
sequence
gaattcatgtgggcaaaaagtacggtgatattcctcgagggatttccatg
ttcagaggagaaaatgtggtcctactaggagaaatagacctggagaaggg
gagtgacacgcccctttagcaagtgtctattgaagagatcctagaacaga
gggtgcaacagcggaccagactggaggcagagaaactgaaggtccagacc
cttaaagttcggggcctctccattcctcgcggagatactctggacgagta
ctgagtccttgctcagagactgctctagagagcaggtgctatcacctggt
cacctcacacattgaccagagtatcacattgaaaagtgatctcgggggct
ggtgagatggctcattgggtaagagcacccgactgttcttccgaaggtcc
atagttcaaatcccaacaaccacatggtggctcactgccatctgtaatga
gatctgacgccctcttctggagtgtctgaagacagctacagtgtacttac
atttgatagataaataaatctttaaataatgcaaaaaaagaaagaaaagt
gatctcacccgagactctggaacttatagaggagaaagtagggaaaagcc
tccaaaatatggggacaggggaaaaattcctgaacagaacagcaatggct
tgggctgtaagatcaagactcgattaatgggacctcataaaatagcaaaa
ctttttgcaaggcaatgacaccgtcaataagacaaaaagaccaccaacag
attggggaagggatcttacgtatcccaaatcggataagggactatatcca
gagatataaagtactcaggaaggggacccatagagtctaataaccccatt
aaaaatgcgacttagaactgacaaagaattctcacctgagaaataccgaa
tggcagagagcacctgaaaaaatgtcacatccttaatcatcagggaatgc
tatcaaacaaccctgagattccacctcacaccggtcagatggctaagtga
aaaattcaagtgacagcagatgaaattcagatttggagaaagagactctt
cctccattgttgtggattgcagcttttaacccacctctggaaatc
gaattcaaggccctggtcaacagagcccattctaggccagccagggctac
acagagaaactctgtctcaaaaggaagaaaggaaggaaggaaggaggcaa
tgagcgaagatggaaaggaaggacagaaaaataaataaatcacaatactt
ttctacatttacaacttaaaccttatgtatacgttacagtggctcttgat
ggccctgaaactaactcctgtgtatctctctcttcagtcagattcactca
ttaaaatcatcactgaacatgtgtgacatgtataagaccctgggctcaat
cctcagcattgcctaaaacctaaatcatgattactgcctataaggaagac
aggacacagttgtttctaggtgttgtacctcccccagcaagaaattaacc
tcacccaatgaatacaacgatgacattcttggttgtctttatttcatgtc
agaataatagaattttacattactatttaatcttttggttgtttggttga
gacaaagtcttacaatgtatcctaagctggatgggctgaaactctatgga
gcccaggcaggccttgaactcgcgatcttcctgtctcacccgcctgagtg
ccaggatttcaagcattttcaagtatgtaccactgtgcttatatatatat
atatatatatatatttggggggcaatgcctcactatatagacctgtctgg
cctggagctcacagagatctgattgccgctgccctctgggtgctgagagc
caactggtgcactaccctagtctgtgggagcatgactttttatgtgagtc
tgtatgtctccagaccatcaagctgctaccataactgataataaaaatgg
ctacagtggctcttgaaggcctgaaacaactcctgtgtatctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104054131_104054674
seq2: B6Ng01-160D21.b_616_1140 (reverse)

seq1  GATTTCCAGA-GTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGG-  48
      |||||||||| |||| | || ||| |||||||||   |||||||||||| 
seq2  GATTTCCAGAGGTGGGT-TAAAAG-CTGCAATCC--ACAACAATGGAGGA  46

seq1  AGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATT  98
      || ||  ||||||||||| || ||      ||||||||||||| ||||||
seq2  AGAGT--CTCTTTCTCCAAAT-CTGAATTTCATCTGCTGTCACTTGAATT  93

seq1  TTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTT  148
      ||| | |||||||| |||||| ||||||||||||||||||||||||| ||
seq2  TTTCA-CTTAGCCA-TCTGACCGGTGTGAGGTGGAATCTCAGGGTTG-TT  140

seq1  TGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGC  198
      ||| | ||| |||||||||||||||||||||   ||||||||||||||||
seq2  TGA-TAGCA-TTCCCTGATGATTAAGGATGT--GACATTTTTTCAGGTGC  186

seq1  TTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTCTTTGTTCAGTTCTGA  248
       |||||||||||||||||| ||||||||||||||||||| |||||||| |
seq2  -TCTCTGCCATTCGGTATTTCTCAGGTGAGAATTCTTTG-TCAGTTCTAA  234

seq1  GCCCCATTTTTTAATAGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGA  298
      | | || |||||||| |||||||| || | | ||  |||| ||||| |||
seq2  GTCGCA-TTTTTAATGGGGTTATTAGACTCTATG-GGTCC-CCTTCCTGA  281

seq1  GTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAATTAGGATAGGTA  348
      || |||||||| |  |||||| ||||||| |||| || || ||||| || 
seq2  GTACTTTATATCT-CTGGATA-TAGTCCCTTATCCGATTTGGGATACGT-  328

seq1  AAGAT-CCTTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGT  397
      ||||| |||| | |||||||||||||||||||||||||||||||||||||
seq2  AAGATCCCTTCCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGT  378

seq1  CTTTTGCCTTGC-AGAAGCTTTGCAATTTTATGAGGTCCCATTTATCAAC  446
      |  ||||||||| | ||| ||||| |||||||||||||||||| ||| | 
seq2  C-ATTGCCTTGCAAAAAGTTTTGCTATTTTATGAGGTCCCATTAATCGAG  427

seq1  TCTCTATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCC  496
      |||  |||||||||| ||||||||||||||||| ||||||||||||||||
seq2  TCTTGATCTTACAGCCCAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCC  477

seq1  CTGTACCCATATCTTCGAGGCTTTTCCCTACTTTTTCCTCTATAAGTT  544
      |||| ||||||| || |||||||||||||||||| |||||||||||||
seq2  CTGTCCCCATATTTTGGAGGCTTTTCCCTACTTTCTCCTCTATAAGTT  525

seq1: chrX_159182992_159183891
seq2: B6Ng01-160D21.g_67_963

seq1  GAATTCAAGGCCCTGGTCAACAGAGCCCATTCTAGGCCAGCCAGGGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCCTGGTCAACAGAGCCCATTCTAGGCCAGCCAGGGCTAC  50

seq1  ACAGAGAAACTCTGTCTCAAAAGGAAGAAAGGAAGGAAGGAAGGAGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACTCTGTCTCAAAAGGAAGAAAGGAAGGAAGGAAGGAGGCAA  100

seq1  TGAGCGAAGATGGAAAGGAAGGACAGAAAAATAAATAAATCACAATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGAAGATGGAAAGGAAGGACAGAAAAATAAATAAATCACAATACTT  150

seq1  TTCTACATTTACAACTTAAACCTTATGTATACGTTACAGTGGCTCTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATTTACAACTTAAACCTTATGTATACGTTACAGTGGCTCTTGAT  200

seq1  GGCCCTGAAACTAACTCCTGTGTATCTCTCTCTTCAGTCAGATTCACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGAAACTAACTCCTGTGTATCTCTCTCTTCAGTCAGATTCACTCA  250

seq1  TTAAAATCATCACTGAACATGTGTGACATGTATAAGACCCTGGGCTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCATCACTGAACATGTGTGACATGTATAAGACCCTGGGCTCAAT  300

seq1  CCTCAGCATTGCCTAAAACCTAAATCATGATTACTGCCTATAAGGAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCATTGCCTAAAACCTAAATCATGATTACTGCCTATAAGGAAGAC  350

seq1  AGGACACAGTTGTTTCTAGGTGTTGTACCTCCCCCAGCAAGAAATTAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAGTTGTTTCTAGGTGTTGTACCTCCCCCAGCAAGAAATTAACC  400

seq1  TCACCCAATGAATACAACGATGACATTCTTGGTTGTCTTTATTTCATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAATGAATACAACGATGACATTCTTGGTTGTCTTTATTTCATGTC  450

seq1  AGAATAATAGAATTTTACATTACTATTTAATCTTTTGGTTGTTTGGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATAGAATTTTACATTACTATTTAATCTTTTGGTTGTTTGGTTGA  500

seq1  GACAAAGTCTTACAATGTATCCTAAGCTGGATGGGCTGAAACTCTATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTCTTACAATGTATCCTAAGCTGGATGGGCTGAAACTCTATGGA  550

seq1  GCCCAGGCAGGCCTTGAACTCACGATCTTCCTGTCTCACCCGCCTGAGTG  600
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCCAGGCAGGCCTTGAACTCGCGATCTTCCTGTCTCACCCGCCTGAGTG  600

seq1  CCAGGATTTCAGGCATTTTCAGGTATGTACCACTGTGCTTATATATATAT  650
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  CCAGGATTTCAAGCATTTTCAAGTATGTACCACTGTGCTTATATATATAT  650

seq1  ATATATATATATATTTGGGGGGCAATGCCTCACTATATAGACCTGTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATTTGGGGGGCAATGCCTCACTATATAGACCTGTCTGG  700

seq1  CCTGGAGCTCACAGAGATCTGCTTGCCTCTGCCTTCTGGGTGCTGAGATC  750
      ||||||||||||||||||||| ||||| ||||| |||||||||||||| |
seq2  CCTGGAGCTCACAGAGATCTGATTGCCGCTGCCCTCTGGGTGCTGAGAGC  750

seq1  CAAGTGGTGCACTACCATAGTCTGTGGGTGCCTGACTTTTTATGTGAGTC  800
      ||| |||||||||||| ||||||||||| || ||||||||||||||||||
seq2  CAACTGGTGCACTACCCTAGTCTGTGGGAGCATGACTTTTTATGTGAGTC  800

seq1  TGTATGTTCACAGAAGATTCAGCTGCTACGATAACTGACTATTAGACATG  850
      |||||||   ||||  ||  ||||||||| |||||||| || || | |||
seq2  TGTATGTCTCCAGACCATCAAGCTGCTACCATAACTGA-TAATAAAAATG  849

seq1  GTTACAGTGGCTCTTGATGGCCCTGAAACTAACTCCTGTGTATCTCTCTC  900
      | ||||||||||||||| || |||||||| ||||||||||||||||||||
seq2  GCTACAGTGGCTCTTGAAGG-CCTGAAAC-AACTCCTGTGTATCTCTCTC  897