BAC Information

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BAC

Clone NameB6Ng01-160F21
ChromosomeX (Build37)
Map Location 103,464,388 - 103,618,004
singlet/doubletdoublet
Overlap geneEG333563, LOC622494, Gm784
Upstream geneLOC622202, LOC100043213, LOC668458, Cypt2, EG633570, Fgf16, Atrx, 2610529C04Rik, Cox7b, Atp7a, Tlr13, LOC671297, Pgk1, Taf9b, 5031408O05Rik
Downstream geneCysltr1, EG331493, LOC668490, LOC100042772, LOC100043263, Zcchc5, Gpr23, P2ry10, A630033H20Rik, Gpr174, LOC668502, LOC622613, LOC385404, Itm2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160F21.bB6Ng01-160F21.g
ACCDH953761DH953762
length1,1571,126
definitionDH953761|Mus musculus domesticus DNA, BAC clone: B6Ng01-160F21, 5' end.DH953762|Mus musculus domesticus DNA, BAC clone: B6Ng01-160F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,616,824 - 103,618,004)(103,464,388 - 103,465,525)
sequence
gaattcagtcattgtttttatttatttcatgggcatcaatgttttacctt
catgtacaaatgtgtgagggtgtcagattccctggagctggaattacaaa
ttaaacctaggtgcaaattaaacctaggtcctctggaagagtagacagtg
ctcttaacttctgagccatctctccagcccccaagttcaacactgatatg
aaatcactcctctttaatatactgctaactgaaatgcactcaagttaaaa
taatcatgcttagatgacaataatgccttcttttctgactactatccctt
aaaatgtagagaataagaacatgaaataaagaaatcactcctttctgcgt
cacataattcctgaattcctacaataattttttattcatatgaaattaca
tgcacaacattatcgtataaatacaatggagattgttctcgaagtaaaga
ggcactattaaagtttataaaatttgaatagaaaaatctaaagaagcact
attaactttgttaaaatttttctacaatcatgatgcctgatattataaca
aaattatttccaataataaatgtagttttctgggtgtggtagtgcatgcc
tttaatgtcaccacaaggtggccagagctaggggaatatctgtgacttga
aggctagtctggtcttcataacaagttcgaggccagccacagctacatag
tgagaccttctctcaaaatacataaatttccttttaaagaatggttatat
atttctaatattcggtctacatgtgtttgtaatgattgtgtggttgcatg
agtcttttcatacatttgaaattgtttaggtaaaaatagaccttctaaaa
tgtaacctttttccctagcacaaaagtacatccactgaataacaactctt
gtgagatcaatgggagtctttgagccaattaaagtgatcccattgttatt
gtcttcagtcacaccgggaaaagctatcagtatattctctcagatttagt
cttcaccatttgccagcatggtagtatatatctgtagctgagcattgtgg
agtaaggcaggaagaaaactggtacctcttgctccgcacacaacttggaa
ggtagaacttgccttaaaaatgtcaggtgtgtgtggaactgctttgaacc
cagtact
gaattctctggtgaatctgtttgggactgtgtatttctaagtggttttca
tatagagagtaagtttctttcatgactacagggctatttatatcacccag
gctgaggtttagttctttgtgatttttgaagactagtctcatttcttttt
ttatgcacttacatatgtaaaattgttctgtgattgcaaaagtaatgctg
ttttcctgcagaatttagtgatttctgtctattctttttagtgcagatga
accttggtctcacactgagtgcccccatgtcccacagccccctcaaaacc
tcccttcactctgttagatctcaagggagcttcctttcccaagtgcttct
cacctttacctcttcagtgctagcaaccaggccttaggcattctatccca
actgctctgattacccccagcctgtggaaaatatctgagctggagtctta
tgtctctcccttcaggcaatgactgttcctgctctgcgtcatagccttca
atctatcctttactaagttgttttttcctgtcctctcctctatttcgtcc
ttttgcctccagtcttatcacatcagttttctctaccctgcagggacagt
tgttccctctggtatccctgatgctctgttcctagctgcagacaacaccc
ttcttgtgacacaaacacacacctcaccattactcagagacagtacatga
gtcccttaaaatttcccaccagatcaattctatccccattcctggaacac
tgggattgtttgattgagcgtagatctctcaagaccccttccctacactt
gtttgattcccattgttgaggagatagcatgagaatctgaactgcttcca
ttttcagtgagtggaagaggcaaacttcctccatcttaagcagggagagc
tcagtgcacttgccagggtcatcctcagctggaacactgcagtgatcatc
tatctgacttttctataagctactacctatagcatgattcacccatcttc
taaatttggaagaaatggtttcctcatacaaaggcaacaccatcataatg
agaatctttttctctcctctggggggcatcatattccttaaaggggatgc
tatcatttactgcagagcatttcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_103616824_103618004
seq2: B6Ng01-160F21.b_42_1198 (reverse)

seq1  AGTACTGGGCTCAAAGGCATGCTCCACCACA-ACCTGACATTTTTTTTAA  49
      ||||||||| ||||| ||| | |||| |||| ||||||||   |||||||
seq2  AGTACTGGGTTCAAA-GCA-GTTCCA-CACACACCTGACA---TTTTTAA  44

seq1  AGCAAGTTCTCTACCTTCAAAGTTGT-TGCGTAGCCAAAGAGTACCAG-T  97
       ||||||  ||||||||| ||||||| |||| ||| | || ||||||| |
seq2  GGCAAGT--TCTACCTTCCAAGTTGTGTGCGGAGCAAGAG-GTACCAGTT  91

seq1  ATCCTCCTGCCTTTACTCCACAAATGCTCAGGCTACAGATATATACTACC  147
       || ||||||| ||||||||| |||||||| |||||||||||||||||||
seq2  TTCTTCCTGCC-TTACTCCAC-AATGCTCA-GCTACAGATATATACTACC  138

seq1  ATGCCTGGCAAAATGGTGAAGACTAAATCTGAGAGAATATACCTGATTAG  197
      ||| ||||| ||||||||||||||||||||||||||||||| |||| |||
seq2  ATG-CTGGC-AAATGGTGAAGACTAAATCTGAGAGAATATA-CTGA-TAG  184

seq1  CCTTTTTCCCGGTGGTGACTTGAAGACAATAAACAATGGGATCACCTTTA  247
      |  |||||||||| ||||| |||||||||| ||||||||||||| |||||
seq2  C--TTTTCCCGGT-GTGAC-TGAAGACAAT-AACAATGGGATCA-CTTTA  228

seq1  ATTGGCTCCAAAGACTCCCATTTGATCTCACAAGAGTTGTTATTCAGTGG  297
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  ATTGGCT-CAAAGACTCCCA-TTGATCTCACAAGAGTTGTTATTCAGTGG  276

seq1  ATGTACTTTTGGTGCTAGGGAAAAAGGTTACATTTTAGAAGGTCTATTTT  347
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  ATGTACTTTT-GTGCTAGGGAAAAAGGTTACATTTTAGAAGGTCTA-TTT  324

seq1  TTACCTAAACAATTTCAAATGTATTGAAAAGACTCATGCAACCACACAAT  397
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTACCTAAACAATTTCAAATGTA-TGAAAAGACTCATGCAACCACACAAT  373

seq1  CATTACAAACACATGTAGACCGAATATTAGAAATATATAACCATTCTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAACACATGTAGACCGAATATTAGAAATATATAACCATTCTTTA  423

seq1  AAAGGAAATTTATGTATTTTGAGAGAAGGTCTCACTATGTAGCTGTGGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATTTATGTATTTTGAGAGAAGGTCTCACTATGTAGCTGTGGCT  473

seq1  GGCCTCGAACTTGTTATGAAGACCAGACTAGCCTTCAAGTCACAGATATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTTGTTATGAAGACCAGACTAGCCTTCAAGTCACAGATATT  523

seq1  CCCCTAGCTCTGGCCACCTTGTGGTGACATTAAAGGCATGCACTACCACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGCTCTGGCCACCTTGTGGTGACATTAAAGGCATGCACTACCACA  573

seq1  CCCAGAAAACTACATTTATTATTGGAAATAATTTTGTTATAATATCAGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAACTACATTTATTATTGGAAATAATTTTGTTATAATATCAGGC  623

seq1  ATCATGATTGTAGAAAAATTTTAACAAAGTTAATAGTGCTTCTTTAGATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATTGTAGAAAAATTTTAACAAAGTTAATAGTGCTTCTTTAGATT  673

seq1  TTTCTATTCAAATTTTATAAACTTTAATAGTGCCTCTTTACTTCGAGAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCAAATTTTATAAACTTTAATAGTGCCTCTTTACTTCGAGAAC  723

seq1  AATCTCCATTGTATTTATACGATAATGTTGTGCATGTAATTTCATATGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCATTGTATTTATACGATAATGTTGTGCATGTAATTTCATATGAA  773

seq1  TAAAAAATTATTGTAGGAATTCAGGAATTATGTGACGCAGAAAGGAGTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTATTGTAGGAATTCAGGAATTATGTGACGCAGAAAGGAGTGA  823

seq1  TTTCTTTATTTCATGTTCTTATTCTCTACATTTTAAGGGATAGTAGTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTTCATGTTCTTATTCTCTACATTTTAAGGGATAGTAGTCAG  873

seq1  AAAAGAAGGCATTATTGTCATCTAAGCATGATTATTTTAACTTGAGTGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGCATTATTGTCATCTAAGCATGATTATTTTAACTTGAGTGCA  923

seq1  TTTCAGTTAGCAGTATATTAAAGAGGAGTGATTTCATATCAGTGTTGAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTAGCAGTATATTAAAGAGGAGTGATTTCATATCAGTGTTGAAC  973

seq1  TTGGGGGCTGGAGAGATGGCTCAGAAGTTAAGAGCACTGTCTACTCTTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCTGGAGAGATGGCTCAGAAGTTAAGAGCACTGTCTACTCTTCC  1023

seq1  AGAGGACCTAGGTTTAATTTGCACCTAGGTTTAATTTGTAATTCCAGCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCTAGGTTTAATTTGCACCTAGGTTTAATTTGTAATTCCAGCTC  1073

seq1  CAGGGAATCTGACACCCTCACACATTTGTACATGAAGGTAAAACATTGAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATCTGACACCCTCACACATTTGTACATGAAGGTAAAACATTGAT  1123

seq1  GCCCATGAAATAAATAAAAACAATGACTGAATTC  1181
      ||||||||||||||||||||||||||||||||||
seq2  GCCCATGAAATAAATAAAAACAATGACTGAATTC  1157

seq1: chrX_103464388_103465525
seq2: B6Ng01-160F21.g_67_1192

seq1  GAATTCTCTGGTGAATCTGTTTGGGACTGTGTATTTCTAAGTGGTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTGAATCTGTTTGGGACTGTGTATTTCTAAGTGGTTTTCA  50

seq1  TATAGAGAGTAAGTTTCTTTCATGACTACAGGGCTATTTATATCACCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGAGTAAGTTTCTTTCATGACTACAGGGCTATTTATATCACCCAG  100

seq1  GCTGAGGTTTAGTTCTTTGTGATTTTTGAAGACTAGTCTCATTTCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGTTTAGTTCTTTGTGATTTTTGAAGACTAGTCTCATTTCTTTTT  150

seq1  TTATGCACTTACATATGTAAAATTGTTCTGTGATTGCAAAAGTAATGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACTTACATATGTAAAATTGTTCTGTGATTGCAAAAGTAATGCTG  200

seq1  TTTTCCTGCAGAATTTAGTGATTTCTGTCTATTCTTTTTAGTGCAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGCAGAATTTAGTGATTTCTGTCTATTCTTTTTAGTGCAGATGA  250

seq1  ACCTTGGTCTCACACTGAGTGCCCCCATGTCCCACAGCCCCCTCAAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTCTCACACTGAGTGCCCCCATGTCCCACAGCCCCCTCAAAACC  300

seq1  TCCCTTCACTCTGTTAGATCTCAAGGGAGCTTCCTTTCCCAAGTGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCACTCTGTTAGATCTCAAGGGAGCTTCCTTTCCCAAGTGCTTCT  350

seq1  CACCTTTACCTCTTCAGTGCTAGCAACCAGGCCTTAGGCATTCTATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTACCTCTTCAGTGCTAGCAACCAGGCCTTAGGCATTCTATCCCA  400

seq1  ACTGCTCTGATTACCCCCAGCCTGTGGAAAATATCTGAGCTGGAGTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTGATTACCCCCAGCCTGTGGAAAATATCTGAGCTGGAGTCTTA  450

seq1  TGTCTCTCCCTTCAGGCAATGACTGTTCCTGCTCTGCGTCATAGCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCCCTTCAGGCAATGACTGTTCCTGCTCTGCGTCATAGCCTTCA  500

seq1  ATCTATCCTTTACTAAGTTGTTTTTTCCTGTCCTCTCCTCTATTTCGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCCTTTACTAAGTTGTTTTTTCCTGTCCTCTCCTCTATTTCGTCC  550

seq1  TTTTGCCTCCAGTCTTATCACATCAGTTTTCTCTACCCTGCAGGGACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTCCAGTCTTATCACATCAGTTTTCTCTACCCTGCAGGGACAGT  600

seq1  TGTTCCCTCTGGTATCCCTGATGCTCTGTTCCTAGCTGCAGACAACACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTCTGGTATCCCTGATGCTCTGTTCCTAGCTGCAGACAACACCC  650

seq1  TTCTTGTGACACAAACACACACCTCACCATTACTCAGAGACAGTACATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGACACAAACACACACCTCACCATTACTCAGAGACAGTACATGA  700

seq1  GTCCCTTAAAATTTCCCACCAGATCAATTCTATCCCCATTCCTGGAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTAAAATTTCCCACCAGATCAATTCTATCCCCATTCCTGGAACAC  750

seq1  T-GGATTGTTTGATTGAGCGTAGATCTCTCAAAGACCCCTTCCCTACACT  799
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGGGATTGTTTGATTGAGCGTAGATCTCTC-AAGACCCCTTCCCTACACT  799

seq1  TGTTTGATTCCCATTGTTGAGGAGATAGCATGAGAATCTGAACTGCTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATTCCCATTGTTGAGGAGATAGCATGAGAATCTGAACTGCTTCC  849

seq1  ATTTTCAGTGAGTGGAAGAGGCAAACTTCCTCCATCTTAAGCAGGGAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTGAGTGGAAGAGGCAAACTTCCTCCATCTTAAGCAGGGAGAG  899

seq1  CTCAGTGCACTTGCCAGGGTCCAATCCTCAGCCTGGAACACTGCAGTGAT  949
      |||||||||||||||||||||  |||||||| ||||||||||||||||||
seq2  CTCAGTGCACTTGCCAGGGTC--ATCCTCAG-CTGGAACACTGCAGTGAT  946

seq1  CATCTATCTTGAC-TCTCTAT-AGCTACCTACCTATAGCATGATTCACCC  997
      |||||||| |||| | ||||| ||||| ||||||||||||||||||| ||
seq2  CATCTATC-TGACTTTTCTATAAGCTA-CTACCTATAGCATGATTCA-CC  993

seq1  CATCTTCTAGATTTGGAGAAAATGGTTTCCTCATACCAAAGGCCAACACC  1047
      ||||||||| |||||||  |||||||||||||||| |||||| |||||||
seq2  CATCTTCTAAATTTGGAAGAAATGGTTTCCTCATA-CAAAGG-CAACACC  1041

seq1  ATCATTAATGAGAATCTTTTCCCTCTCCTCTGTGAAGCATTCATATTCCC  1097
      |||| |||||||||||||||  |||||||||| |  ||| ||||||||| 
seq2  ATCA-TAATGAGAATCTTTT-TCTCTCCTCTGGGGGGCA-TCATATTCCT  1088

seq1  TAAAGGGGGATGCTACCATTCACTGCCAAGAGCATGTCACA  1138
      |||| |||||||||| |||| |||||  ||||||| |||||
seq2  TAAA-GGGGATGCTATCATTTACTGC--AGAGCATTTCACA  1126