BAC Information

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BAC

Clone NameB6Ng01-160P14
ChromosomeX (Build37)
Map Location 158,186,799 - 158,314,201
singlet/doubletdoublet
Overlap geneRai2, Gm47, Nhs
Upstream geneRs1, Gja6, Scml2, LOC414364, Prkaca-ps1
Downstream geneReps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P14.bB6Ng01-160P14.g
ACCDH954212DH954213
length1,1551,075
definitionDH954212|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P14, 5' end.DH954213|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,313,016 - 158,314,201)(158,186,799 - 158,187,883)
sequence
gaattctcaaagtggaatggtagaccaatcttctaagagaaaatgctcag
attgaaaccaaaagtttgcgtgtggcatagggataaacaatgaaccagtg
tctccaaaccttgtgctgggaaacaagcaaacagcagaaagaaaggctga
aactgaaaagagcagaatgctcctgggccaaaagcctggctctggatcat
gggtctgaaggatgaagccaactgtacctgatctcatccatcttgagact
aataagctaccaagtgctcatgagtttctctgggtggctatttcttattc
atagtcccctagttcctatagatatgcatcctctatccttaaggagtttg
ttctgttctgggctgtatttgtaatgaatgtaatgaaggcgacaatagtg
aattaaatgctatgtttagcagaaagatagtcttccttgttttctcagat
gagttgtaagaactatgatatctacacgtttagcacacctgtcataagcc
ctttagtgtttgtgctaacctttggtgaaaccagaataaacgtcaaggaa
tggcatcgggaggtggaaggcaggatcaggaacctgcagccagaagccac
aagggtcaagaaacatcataaagactaaagttcatgtagaccccaggaac
aatgtgaaaaagcatcctgtagcctcccatgtcttggtccaagggcatag
ccgtccccatctgtattataaatttcaaagtttttccagccttgagttca
tttagtagtctggattttacctatacattccttcctagctccctgtcccc
tcccctgcccagtgccctctaaatgcacaatccaagctcctgatgtacat
tgcactgtttgctcttgtcttgcagctgtctccacttggacatcgagagc
aagttgagttgtatactaccgtgcacatggcacacagcgaaacatcttcc
tcccagcgacagccacctgtgtagagagctgcacgcatgcagacagagtc
tgcaagcctcgtagagtactgatcccagcagggggattctggaaaaatca
gagttgtgccatcaggatttctgtccattagtctatactcctagccttga
gcaggccttggaaatctccatgtctaccgtgatgcaatcaggcaattaat
atgag
gaattcatggcagtgggaacatatgaaagaggcttcttgcatcacagtag
agcatcaaacagagatattatttgaacaaggaagagggctataactttca
aatgcctaccccaagtattctacttctgctagctaaggggtctttccacc
tcctaaaggagccacagcttcctaatatagtatcatcagctggtgaagat
gcatccaagacacagtgctgtggaagatatttcagattcaaattatcatc
aatagatattagataggtcagtcttttgagtgtcaggtggagaatctgta
tgcccagagagtactccagaatactgacttcgagaactgctgtcctggtc
catttctctaggaaatatcttatctatatcattctagatcatttagtttg
caacacagagaagcatgaactagaatcttaacacatgctattgacatgat
ggtgcatgtattcattagctcaagaccaattttaaatcccaatcaactct
ataattctttcaaaggactaaaaatcaagtcacaaataataattattgga
tttatttttgttccatatttaactactgagttcttaagacatgcatcccc
cttctaggctggtgagccagaggcataaataactttttggatctctttgt
tatcaggatgtttgaaaggataaataatatgtgaataaaaagtggagtgt
tagtgaatgagcaaataaatatgctgtaaggctctactataagccatatg
tgctataaggaccttctgtgagcctcccactggccttcacagcatcttta
tttagttgtctggaaccccatttcacacaggagaaagtagagtgacgatc
atagtcaccggtcagaaatggaaccaacagtcaagtctagagctttaggt
ttcctataccgcttgagtcctcttctctcttcacacttggtctgatgctg
aggagtcacagtcttttctatatctgatttgctgtgtggtatagctttgc
tcttgctggagctcgtcaggtcacttttttctccgagactcagatctatt
tggagtactatctgcacaagctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_158313016_158314201
seq2: B6Ng01-160P14.b_48_1202 (reverse)

seq1  CTCATATTA--TGCGTGGATTGCATTCAGGGTAGACATGGGAGTATTTCA  48
      |||||||||  ||| | ||||||| ||| ||||||||| |||| ||||| 
seq2  CTCATATTAATTGCCT-GATTGCA-TCACGGTAGACAT-GGAG-ATTTCC  46

seq1  AAGCACTTGCTTCAGCTAAGGAGGTAATAGGACTAATGGGACAGAAAATC  98
      |||  | ||||  ||   |||||   ||| ||||||| |||||| |||||
seq2  AAG-GCCTGCTCAAGGCTAGGAG--TATA-GACTAAT-GGACAG-AAATC  90

seq1  CTTGATGGCACAACCTCTGATGTTCTCCCAGAAATCCCCCCTGCCTGGGA  148
      | ||||||||||| ||||||  || | ||||||   ||||||| ||||||
seq2  C-TGATGGCACAA-CTCTGA--TTTTTCCAGAA--TCCCCCTG-CTGGGA  133

seq1  TCAGTTACCTCTACGAAGGGCTTGCAGACTCTGTCTGGCATGGCGGTGCA  198
      |||||   ||||||||  |||||||||||||||||| |||||   |||||
seq2  TCAGT--ACTCTACGA--GGCTTGCAGACTCTGTCT-GCATG--CGTGCA  176

seq1  GCTCTTCTACACAGGGTGGCCTGGTCGCTGGGAGGAAGATGTTTCGCTGT  248
      |||| |||||||| ||||||   |||||||||||||||||||||||||||
seq2  GCTC-TCTACACA-GGTGGC--TGTCGCTGGGAGGAAGATGTTTCGCTGT  222

seq1  TGGTGCCATGGTGCACGGTAGTATAC-ACTCAACTTGCTCTCGATGTCCA  297
        ||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  --GTGCCAT-GTGCACGGTAGTATACAACTCAACTTGCTCTCGATGTCCA  269

seq1  AGTTGGAGACAGCTGCAAGACAAAGAGCAAACAGTGCAATGTACATCAGG  347
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AG-TGGAGACAGCTGCAAGAC-AAGAGCAAACAGTGCAATGTACATCAGG  317

seq1  AGCTTGGATTGTGCATTTAGAGGGCACTGGGGCAGGGGAGGGGACAGGGA  397
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCTTGGATTGTGCATTTAGAGGGCACT-GGGCAGGGGAGGGGACAGGGA  366

seq1  GCTAGGAAGGAATGTATAGGTAAAATCCAGACTACTAAATGAACTCAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAGGAATGTATAGGTAAAATCCAGACTACTAAATGAACTCAAGG  416

seq1  CTGGAAAAACTTTGAAATTTATAATACAGATGGGGACGGCTATGCCCTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAACTTTGAAATTTATAATACAGATGGGGACGGCTATGCCCTTG  466

seq1  GACCAAGACATGGGAGGCTACAGGATGCTTTTTCACATTGTTCCTGGGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGACATGGGAGGCTACAGGATGCTTTTTCACATTGTTCCTGGGGT  516

seq1  CTACATGAACTTTAGTCTTTATGATGTTTCTTGACCCTTGTGGCTTCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGAACTTTAGTCTTTATGATGTTTCTTGACCCTTGTGGCTTCTGG  566

seq1  CTGCAGGTTCCTGATCCTGCCTTCCACCTCCCGATGCCATTCCTTGACGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTTCCTGATCCTGCCTTCCACCTCCCGATGCCATTCCTTGACGT  616

seq1  TTATTCTGGTTTCACCAAAGGTTAGCACAAACACTAAAGGGCTTATGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGGTTTCACCAAAGGTTAGCACAAACACTAAAGGGCTTATGACA  666

seq1  GGTGTGCTAAACGTGTAGATATCATAGTTCTTACAACTCATCTGAGAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTAAACGTGTAGATATCATAGTTCTTACAACTCATCTGAGAAAA  716

seq1  CAAGGAAGACTATCTTTCTGCTAAACATAGCATTTAATTCACTATTGTCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGACTATCTTTCTGCTAAACATAGCATTTAATTCACTATTGTCG  766

seq1  CCTTCATTACATTCATTACAAATACAGCCCAGAACAGAACAAACTCCTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTACATTCATTACAAATACAGCCCAGAACAGAACAAACTCCTTA  816

seq1  AGGATAGAGGATGCATATCTATAGGAACTAGGGGACTATGAATAAGAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAGGATGCATATCTATAGGAACTAGGGGACTATGAATAAGAAAT  866

seq1  AGCCACCCAGAGAAACTCATGAGCACTTGGTAGCTTATTAGTCTCAAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCCAGAGAAACTCATGAGCACTTGGTAGCTTATTAGTCTCAAGAT  916

seq1  GGATGAGATCAGGTACAGTTGGCTTCATCCTTCAGACCCATGATCCAGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGATCAGGTACAGTTGGCTTCATCCTTCAGACCCATGATCCAGAG  966

seq1  CCAGGCTTTTGGCCCAGGAGCATTCTGCTCTTTTCAGTTTCAGCCTTTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTTTGGCCCAGGAGCATTCTGCTCTTTTCAGTTTCAGCCTTTCT  1016

seq1  TTCTGCTGTTTGCTTGTTTCCCAGCACAAGGTTTGGAGACACTGGTTCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGTTTGCTTGTTTCCCAGCACAAGGTTTGGAGACACTGGTTCAT  1066

seq1  TGTTTATCCCTATGCCACACGCAAACTTTTGGTTTCAATCTGAGCATTTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCCCTATGCCACACGCAAACTTTTGGTTTCAATCTGAGCATTTT  1116

seq1  CTCTTAGAAGATTGGTCTACCATTCCACTTTGAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGAAGATTGGTCTACCATTCCACTTTGAGAATTC  1155

seq1: chrX_158186799_158187883
seq2: B6Ng01-160P14.g_67_1141

seq1  GAATTCATGGCAGTGGGAACATATGAAAGAGGCTTCTTGCATCACAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCAGTGGGAACATATGAAAGAGGCTTCTTGCATCACAGTAG  50

seq1  AGCATCAAACAGAGATATTATTTGAACAAGGAAGAGGGCTATAACTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAACAGAGATATTATTTGAACAAGGAAGAGGGCTATAACTTTCA  100

seq1  AATGCCTACCCCAAGTATTCTACTTCTGCTAGCTAAGGGGTCTTTCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTACCCCAAGTATTCTACTTCTGCTAGCTAAGGGGTCTTTCCACC  150

seq1  TCCTAAAGGAGCCACAGCTTCCTAATATAGTATCATCAGCTGGTGAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGGAGCCACAGCTTCCTAATATAGTATCATCAGCTGGTGAAGAT  200

seq1  GCATCCAAGACACAGTGCTGTGGAAGATATTTCAGATTCAAATTATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAAGACACAGTGCTGTGGAAGATATTTCAGATTCAAATTATCATC  250

seq1  AATAGATATTAGATAGGTCAGTCTTTTGAGTGTCAGGTGGAGAATCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATATTAGATAGGTCAGTCTTTTGAGTGTCAGGTGGAGAATCTGTA  300

seq1  TGCCCAGAGAGTACTCCAGAATACTGACTTCGAGAACTGCTGTCCTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAGAGTACTCCAGAATACTGACTTCGAGAACTGCTGTCCTGGTC  350

seq1  CATTTCTCTAGGAAATATCTTATCTATATCATTCTAGATCATTTAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTAGGAAATATCTTATCTATATCATTCTAGATCATTTAGTTTG  400

seq1  CAACACAGAGAAGCATGAACTAGAATCTTAACACATGCTATTGACATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAGAGAAGCATGAACTAGAATCTTAACACATGCTATTGACATGAT  450

seq1  GGTGCATGTATTCATTAGCTCAAGACCAATTTTAAATCCCAATCAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATGTATTCATTAGCTCAAGACCAATTTTAAATCCCAATCAACTCT  500

seq1  ATAATTCTTTCAAAGGACTAAAAATCAAGTCACAAATAATAATTATTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTTTCAAAGGACTAAAAATCAAGTCACAAATAATAATTATTGGA  550

seq1  TTTATTTTTGTTCCATATTTAACTACTGAGTTCTTAAGACATGCATCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTGTTCCATATTTAACTACTGAGTTCTTAAGACATGCATCCCC  600

seq1  CTTCTAGGCTGGTGAGCCAGAGGCATAAATAACTTTTTGGATCTCTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGCTGGTGAGCCAGAGGCATAAATAACTTTTTGGATCTCTTTGT  650

seq1  TATCAGGATGTTTGAAAGGATAAATAATATGTGAATAAAAAGTGGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGATGTTTGAAAGGATAAATAATATGTGAATAAAAAGTGGAGTGT  700

seq1  TAGTGAATGAGCAAATAAATATGCTGTAAGGCTCTACTATAAGCCATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATGAGCAAATAAATATGCTGTAAGGCTCTACTATAAGCCATATG  750

seq1  TGCTATAAGGACCTTCTGTGAGCCTCCCACTGGCCTTCACAGCATCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAGGACCTTCTGTGAGCCTCCCACTGGCCTTCACAGCATCTTTA  800

seq1  TTTAGTTGTCTGGAACCCCATTTCACACAGGAGAAAGTAGAGTGACGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTGTCTGGAACCCCATTTCACACAGGAGAAAGTAGAGTGACGATC  850

seq1  ATAGTCACCGGTCAGAAATGGAACCAACAGTCAAGTCTAGAGCTTTAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAGTCACCGGTCAGAAATGGAACCAACAGTCAAGTCTAGAGCTTTA-GG  899

seq1  TTTCCTATACCGCTTGAGTCCTCTTCTCTCTTCCACACTTGGTCTGATGC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCCTATACCGCTTGAGTCCTCTTCTCTCTT-CACACTTGGTCTGATGC  948

seq1  TGAGGAGTCACAGTCTTTTTCTATATCTTGAATTTGCTGTGTGGTATAGC  1000
      ||||||||||||||| ||||||||||||   |||||||||||||||||||
seq2  TGAGGAGTCACAGTC-TTTTCTATATCT--GATTTGCTGTGTGGTATAGC  995

seq1  TTTGCTCTTGCT-GAGCTCGTCCAGGTCCACTTTTTTCTCCAAAGACCTC  1049
      |||||||||||| |||||||| ||||| |||||||||||||  ||| |||
seq2  TTTGCTCTTGCTGGAGCTCGT-CAGGT-CACTTTTTTCTCC-GAGA-CTC  1041

seq1  AGGAATCTATTTGGAGGTACTATCTGCAC-AGCTCTT  1085
      ||  ||||||||||| ||||||||||||| |||||||
seq2  AG--ATCTATTTGGA-GTACTATCTGCACAAGCTCTT  1075