BAC Information

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BAC

Clone NameB6Ng01-161E01
ChromosomeX (Build37)12 (Build37)
Map Location 4,690,899 - 4,691,78623,890,001 - 23,890,901
singlet/doubletsingletsinglet
Overlap geneLOC668967
Upstream geneLOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275
Downstream geneLOC434724, LOC100043935, LOC668968, LOC546182, Mycs, LOC668969, LOC668970, OTTMUSG00000016453, LOC627412, LOC436185, LOC668971, LOC100043936, LOC668972, Nudt11, LOC208428, AU022751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161E01.bB6Ng01-161E01.g
ACCDH954420DH954421
length9901,075
definitionDH954420|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E01, 5' end.DH954421|Mus musculus domesticus DNA, BAC clone: B6Ng01-161E01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,690,899 - 4,691,786)(23,890,001 - 23,890,901)
sequence
gaattccaataggggccctaaaagggagggcaacaaggtcgaaagccagg
gggaggttgaaaaccagttttggtagttcacctttcctctaggccattgt
aaatacttgtgtatgggtgtaactcagctatctacagttctaagtatcta
ctctggttcctctttaggtcttaaacttcctttttcctagttgatgctaa
attcctgtgtaaggcagtgacctagcttttattaaagtgatagtgtaatg
ccagaggcaattctgaatgtcactgaatagtcaactttcttcctgaattc
taagcccatggtctgctcaaggactttctaggacagtggaacaccggtca
aggcttggctatgtctaaaatttctacctttctagccttaatgtatgtta
tatcctgtcttcttactaagactactacttttaagacatcttttgcctct
aaatttttatctatataatatgttgctctgacaaagctatagaaatatcc
ctatgcttatcattagcaaaatgggcagtatgtagctgctgatctaaagc
tgtggtagatacctttttaaagtttgcattttcagattttaaaaccaagg
atcattttctaactctaatgggcagcaaagcataagcaggtctcttacaa
aaacataacagtagattccttatctaaattaggatttacacaattagtta
attgacaagaattacaatgaatatgaaaagactttccaagattggcgatc
ttaactcttaaaattatctaacaataagcatataggtaaggtacaaactt
tcatagctataaggagctggcctgaatgctcaaaacagtgtctctgacga
aagcatcttgtacattctctgtaccagtcttttgcctcatgagtcagctt
ttttagtgttttattttagtggcaccaggttggtactcctgctgcaccca
tgtgagatacgagtttcttatctgttgtagtgatgctctc
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccgttccccagctgaggtgttctgaatccaggctggatcctt
ctcaacagtctgttttacgggaacacttcattaccaccgttccccagctg
aggagttctgaatccatgctggatccttctcaacagtctgttttacggga
acacttatgaccgtgacccgcagttctggttccggaatgagggatcttcc
ttgcgccggtgatggtaaccatcccaggttttctcatcccaggatttctc
gccccgggttttctcgtcctgggtttcagcaccaactcttacacgcattc
acgaccggccaggaagaacacagcaaaccggaatcttctgcggcaaagct
ttattgcttacatcttcaggagccagagagcaagagagccagagcaagag
agcaagagagagaatggcgaaaccccgtcccctttaaggagaattattct
ccacctaggacgtattactccctgattggctgcagcccatcggcccagtt
gtcgtcacggggaaggcagagcacatggggtggagaactacccttggcac
atgcgcagattatttgtttaccacttagaacacaggatgtcagcgccatc
ttgcaacggcgaatgtgagggcggcttcctacatttttatacatgtatta
ttattgcaagatgtgtgacagaatccctgtctgctgtgtttgtttgttgt
cttttgagactgagtcttatgcatcgcagctggcctgatatgaagataaa
cttaagctgggcagtgatggtgcaggactttaatcccaacactcagaagc
agagttagctgaattatctgatttggaggccagcctggtctacagagtga
gttccaggatagccagtgctacacagagaaaccctgtctttgaaaccaaa
cataacaaacttgtttgcagtgctagcatcacagcatgtactcaaaccta
tttatattgtgctggacccaagccaagcagaaggacagcagagtctggct
gtttctacaggtgagactaccagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_4690899_4691786
seq2: B6Ng01-161E01.b_49_930

seq1  CCAATAGGGGCCCCATAAGGGAGGGCAACAAGGTCTAAAGCCAGGGGGAG  50
      ||||||||||||| | ||||||||||||||||||| ||||||||||||||
seq2  CCAATAGGGGCCCTAAAAGGGAGGGCAACAAGGTCGAAAGCCAGGGGGAG  50

seq1  GTTGAAAAACCAGTCTTGGTAGTCTACCTTCCCTCTAGGCCATTGTAAAT  100
      |||| ||||||||| ||||||||  ||||| |||||||||||||||||||
seq2  GTTG-AAAACCAGTTTTGGTAGTTCACCTTTCCTCTAGGCCATTGTAAAT  99

seq1  ACTTGTGTATGGGTGTAACTCAGCTATCTACAGTTCTAAGTATCTACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTATGGGTGTAACTCAGCTATCTACAGTTCTAAGTATCTACTCT  149

seq1  CGTTCCTCTTTAGGTCTTAAACTTCCTTTTTCCTAGTTGATGGTAAATTC  200
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGTTCCTCTTTAGGTCTTAAACTTCCTTTTTCCTAGTTGATGCTAAATTC  199

seq1  CTGTGTAAGGCAGTGACCTAGCTTTTATTAAAGTGATAGTGTAATGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAAGGCAGTGACCTAGCTTTTATTAAAGTGATAGTGTAATGCCAG  249

seq1  AGGCAATTCTGAATGTCACTGAATAGTCAACTTTCTTCCTGAATTCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTCTGAATGTCACTGAATAGTCAACTTTCTTCCTGAATTCTAAG  299

seq1  CCCATGGTCTGCTCAAGGACTTTCTAGGACAGTGGAACACCGGTCAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTCTGCTCAAGGACTTTCTAGGACAGTGGAACACCGGTCAAGGC  349

seq1  TTGGCTATGTCTAAAATTTCTACCTTTCTAGCCTTAATGTATGTTATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATGTCTAAAATTTCTACCTTTCTAGCCTTAATGTATGTTATATC  399

seq1  CTGTCTTCTTACTAAGACTACTACTTTTAAGACATCTTTTGCCTCTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGTCTTCTTACTAAGACTACTACTTTTAAGACATCTTTTGCCTCTAAAT  449

seq1  TTTTATCTATATAATATGTTGCTCTGACAAAGCTATGGAAATATCCCTAT  500
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTATCTATATAATATGTTGCTCTGACAAAGCTATAGAAATATCCCTAT  499

seq1  GCTTATCATTAGCAAAATGGACAGTATGTAGCTGCTGATCTAAAGCTGTG  550
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTTATCATTAGCAAAATGGGCAGTATGTAGCTGCTGATCTAAAGCTGTG  549

seq1  GTAGATACCTTTTTAAAGTTTGCATTTTCAGATTTTAAAACCAAGGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATACCTTTTTAAAGTTTGCATTTTCAGATTTTAAAACCAAGGATCA  599

seq1  TTTTCTAACTCTAATGGGCAGCAAAGCATAAGCAGGTCTCTTACAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAACTCTAATGGGCAGCAAAGCATAAGCAGGTCTCTTACAAAAAC  649

seq1  ATAACAGTAGATTCCTTATCTAAATTAGGATTTATACAATTAGTTAATTG  700
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAACAGTAGATTCCTTATCTAAATTAGGATTTACACAATTAGTTAATTG  699

seq1  ACAAGAATTACAATGAATAT-TTTAGACTTGCCAAGATTGGCGATCTTAA  749
      ||||||||||||||||||||    |||||| |||||||||||||||||||
seq2  ACAAGAATTACAATGAATATGAAAAGACTTTCCAAGATTGGCGATCTTAA  749

seq1  CTCTTAAAATTATCTAACAATAAGCATATAGGTAAGGTATACAAACTTTC  799
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTCTTAAAATTATCTAACAATAAGCATATAGGTAAGG--TACAAACTTTC  797

seq1  ATAGCTATAAGGAGCTGGCCTGAATGGCAAAAAAAACAGTGTCTCTGACG  849
      ||||||||||||||||||||||||||      ||||||||||||||||||
seq2  ATAGCTATAAGGAGCTGGCCTGAATG---CTCAAAACAGTGTCTCTGACG  844

seq1  AAAGCATCTTGTACATTCTCTGTACCAGTCTTTTTGCCT  888
      |||||||||||||||||||||||||||||| ||||||||
seq2  AAAGCATCTTGTACATTCTCTGTACCAGTC-TTTTGCCT  882

seq1: chr12_23890001_23890901
seq2: B6Ng01-161E01.g_253_1143

seq1  AGTCTGTTTTACGGGAACACTTATGACCGTGACCCGCAGTTCTGGTTCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTTTACGGGAACACTTATGACCGTGACCCGCAGTTCTGGTTCCG  50

seq1  GAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCATCCCAGGTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCATCCCAGGTTTTCT  100

seq1  CATCCCAGGATTTCTCGCCCCGGGTTTTCTCGTCCTGGGTTTCAGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGGATTTCTCGCCCCGGGTTTTCTCGTCCTGGGTTTCAGCACCA  150

seq1  ACTCTTACACGCATTCACGACCGGCCAGGAAGAACACAGCAAACCGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTACACGCATTCACGACCGGCCAGGAAGAACACAGCAAACCGGAAT  200

seq1  CTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAG  250

seq1  AGAGCCAGAGCAAGAGAGCAAGAGAGAGAATGGCGAAACCCCGTCCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGAGCAAGAGAGCAAGAGAGAGAATGGCGAAACCCCGTCCCCTT  300

seq1  TAAGGAGAATTATTCTCCACCTAGGACGTATTACTCCCTGATTGGCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGAATTATTCTCCACCTAGGACGTATTACTCCCTGATTGGCTGCA  350

seq1  GCCCATCGGCCCAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCGGCCCAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGGA  400

seq1  GAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACA  450

seq1  GGATGTCAGCGCCATCTTGCAACGGCGAATGTGAGGGCGGCTTCCTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCAGCGCCATCTTGCAACGGCGAATGTGAGGGCGGCTTCCTACAT  500

seq1  TTTTATACATGTATTATTATTGCAAGATGTGTGACAGAATCCCTGTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACATGTATTATTATTGCAAGATGTGTGACAGAATCCCTGTCTGC  550

seq1  TGTGTTTGTTTGTTGTCTTTTGAGACTGAGTCTTATGCATCGCAGGCTGG  600
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGTTTGTTTGTTGTCTTTTGAGACTGAGTCTTATGCATCGCA-GCTGG  599

seq1  CCTGATATGAAGATAAACTTAAGCTGGGCAGTGATGGTGCAGGACTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATATGAAGATAAACTTAAGCTGGGCAGTGATGGTGCAGGACTTTAA  649

seq1  TCCCAACACTCAGGAAGCAGAGTTAGCTGAA-TATCTGATTTGGAGGCCA  699
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  TCCCAACACTCA-GAAGCAGAGTTAGCTGAATTATCTGATTTGGAGGCCA  698

seq1  GCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGTGCTACACAGAGAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGTGCTACACAGAGAAAC  748

seq1  CCTGTCTTGAAAACCAAACAATAACAAAC-TGTTTGCAAGTGCTAGCATC  798
      ||||||||  ||||||||| ||||||||| ||||||| ||||||||||||
seq2  CCTGTCTTTGAAACCAAAC-ATAACAAACTTGTTTGC-AGTGCTAGCATC  796

seq1  ACAGGCATGTACCTCCAAACCTATTTTATATGGTGCTGGAACCCAAGGCA  848
      ||| ||||||||   |||||||| ||||||| ||||||| |||||| || 
seq2  ACA-GCATGTAC--TCAAACCTA-TTTATATTGTGCTGG-ACCCAA-GCC  840

seq1  AAGCAAGAAGGACAGCAGAGTCTGGCTGTTTCCCACAAGTGTGACTACCA  898
      |||| |||||||||||||||||||||||||| | ||| ||| ||||||||
seq2  AAGC-AGAAGGACAGCAGAGTCTGGCTGTTT-CTACAGGTGAGACTACCA  888

seq1  GCA  901
      |||
seq2  GCA  891