BAC Information

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BAC

Clone NameB6Ng01-161K23
ChromosomeX (Build37)
Map Location 164,596,017 - 164,730,696
singlet/doubletdoublet
Overlap geneFrmpd4
Upstream geneTmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31, Arhgap6, Amelx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161K23.bB6Ng01-161K23.g
ACCDH954731DH954732
length7451,105
definitionDH954731|Mus musculus domesticus DNA, BAC clone: B6Ng01-161K23, 5' end.DH954732|Mus musculus domesticus DNA, BAC clone: B6Ng01-161K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,729,952 - 164,730,696)(164,596,017 - 164,597,123)
sequence
gaattctattgtcctagtttttgccctgatgaatcatctctccacagaca
tgtgagcctttagcaaatgcattatgtcatccctctgagctctgtggaga
caactgatatgcctttggatcccacaagagctgatggctccatgtgtccc
tcatgcagtgactctgacttgggagggtttccaggaatgtgacagaaaac
cctgtccctggtgccgactactggaaaggtgggcctgtgatcctgtctcc
tctcagactgccacatacaaaagtaatgatttatttttagagaagaaatc
attagtcattagtctctcccaagcttctttcccccaccccttgggtaaaa
tttaagaacctgattctttataagaaaattttcaggctgttagaataaat
ggtaaaatgattatagcctttgtacaatgaagcctcctttacagtcaaag
gcaaattttccatagtaatccttccctcaagctcctggtcctcacatcta
aatcaactttatatttcacaacttattacagaattctctgattcctttta
tattttttttgttctggcttcctcaaacttagaattcaaaacctaatttt
ataatacactaaacatttgccctttaagctgattacaaaaatcttatctg
gaaattgattcttagcaaaacagccctctagcttaggtatagaagaatag
catatgaatatatatatatatatatgatgtgtgtgtgtatgtgtg
gaattctgaaaagttagtggtttgtccactcaaatcatagaacactagaa
attttctaatagaatggcatactcccctctgtttattgactaaatatcac
aaagctgtccctttctgcttgggagagcttagtcacatgacaaaactgtg
gaatggtggtgaaagattcccagcaagcaccagaggccatgaagctgaag
taggatatctctgttgtacacagcaaggagactgctttcgttcttttcaa
ggtgaacactggtatggacagagcagtaggaaaatattttaatttatact
aaagatttactgggtaggatgagatgcttgaaaacagaactgttatctct
tgcagggtgggggtcaacttgctcatagttctgtgggtcatagtacttat
ggggcatacaataaatcaatactggatgaatgagctggcttcccactgct
gtcccctctcacttggcggacataaatttaactttaaggttatacacaag
aaagacacagctattcttcttcattctggttcaatatctgtatcatcagc
aacatgcatttgctgcctgctaccttcctgctgagggtttgaagtaaggc
ataagtggacaattagggggttagaagaggcaatactttttgacattact
gcaactgaagtaataataaactgacatactacacatgtgtgtaaacatac
atgctctcagtacacacatacacacacacacacacacacacacacacaca
caggatactcaagttaatagaaatcctaaatgttgatgataaagcagact
ggaatgaagccagcaaaaatgtcattcttcctgcttaatggaaagaatta
ataattcaaacccatgaattatatatgacgtctcacccaggattttggtt
atttttagcactagtggagtaacaggatgctccaggtagagcttgtgcca
gcaccatactggaggagcaagtgcaaggaaaacggggctggattttctca
atcaaggaagcaaagacaaatctcagcttctcagaaagacgaagaaagct
tgctcgtggtgcaaattgaatggccaatggcatggaaaggagtcctagtg
cagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_164729952_164730696
seq2: B6Ng01-161K23.b_48_792 (reverse)

seq1  CACACATACACACACACATCATATATATATATATATATTCATATGCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACACACACATCATATATATATATATATATTCATATGCTATT  50

seq1  CTTCTATACCTAAGCTAGAGGGCTGTTTTGCTAAGAATCAATTTCCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATACCTAAGCTAGAGGGCTGTTTTGCTAAGAATCAATTTCCAGAT  100

seq1  AAGATTTTTGTAATCAGCTTAAAGGGCAAATGTTTAGTGTATTATAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTGTAATCAGCTTAAAGGGCAAATGTTTAGTGTATTATAAAAT  150

seq1  TAGGTTTTGAATTCTAAGTTTGAGGAAGCCAGAACAAAAAAAATATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTGAATTCTAAGTTTGAGGAAGCCAGAACAAAAAAAATATAAAA  200

seq1  GGAATCAGAGAATTCTGTAATAAGTTGTGAAATATAAAGTTGATTTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGAGAATTCTGTAATAAGTTGTGAAATATAAAGTTGATTTAGAT  250

seq1  GTGAGGACCAGGAGCTTGAGGGAAGGATTACTATGGAAAATTTGCCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACCAGGAGCTTGAGGGAAGGATTACTATGGAAAATTTGCCTTTG  300

seq1  ACTGTAAAGGAGGCTTCATTGTACAAAGGCTATAATCATTTTACCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAGGAGGCTTCATTGTACAAAGGCTATAATCATTTTACCATTTA  350

seq1  TTCTAACAGCCTGAAAATTTTCTTATAAAGAATCAGGTTCTTAAATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAGCCTGAAAATTTTCTTATAAAGAATCAGGTTCTTAAATTTTA  400

seq1  CCCAAGGGGTGGGGGAAAGAAGCTTGGGAGAGACTAATGACTAATGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGGTGGGGGAAAGAAGCTTGGGAGAGACTAATGACTAATGATTT  450

seq1  CTTCTCTAAAAATAAATCATTACTTTTGTATGTGGCAGTCTGAGAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAAAAATAAATCATTACTTTTGTATGTGGCAGTCTGAGAGGAGA  500

seq1  CAGGATCACAGGCCCACCTTTCCAGTAGTCGGCACCAGGGACAGGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCACAGGCCCACCTTTCCAGTAGTCGGCACCAGGGACAGGGTTTT  550

seq1  CTGTCACATTCCTGGAAACCCTCCCAAGTCAGAGTCACTGCATGAGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACATTCCTGGAAACCCTCCCAAGTCAGAGTCACTGCATGAGGGAC  600

seq1  ACATGGAGCCATCAGCTCTTGTGGGATCCAAAGGCATATCAGTTGTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAGCCATCAGCTCTTGTGGGATCCAAAGGCATATCAGTTGTCTCC  650

seq1  ACAGAGCTCAGAGGGATGACATAATGCATTTGCTAAAGGCTCACATGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTCAGAGGGATGACATAATGCATTTGCTAAAGGCTCACATGTCT  700

seq1  GTGGAGAGATGATTCATCAGGGCAAAAACTAGGACAATAGAATTC  745
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGATGATTCATCAGGGCAAAAACTAGGACAATAGAATTC  745

seq1: chrX_164596017_164597123
seq2: B6Ng01-161K23.g_65_1169

seq1  GAATTCTGAAAAGTTAGTGGTTTGTCCACTCAAATCATAGAACACTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAAGTTAGTGGTTTGTCCACTCAAATCATAGAACACTAGAA  50

seq1  ATTTTCTAATAGAATGGCATACTCCCCTCTGTTTATTGACTAAATATCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAATAGAATGGCATACTCCCCTCTGTTTATTGACTAAATATCAC  100

seq1  AAAGCTGTCCCTTTCTGCTTGGGAGAGCTTAGTCACATGACAAAACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTCCCTTTCTGCTTGGGAGAGCTTAGTCACATGACAAAACTGTG  150

seq1  GAATGGTGGTGAAAGATTCCCAGCAAGCACCAGAGGCCATGAAGCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTGGTGAAAGATTCCCAGCAAGCACCAGAGGCCATGAAGCTGAAG  200

seq1  TAGGATATCTCTGTTGTACACAGCAAGGAGACTGCTTTCGTTCTTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATCTCTGTTGTACACAGCAAGGAGACTGCTTTCGTTCTTTTCAA  250

seq1  GGTGAACACTGGTATGGACAGAGCAGTAGGAAAATATTTTAATTTATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACACTGGTATGGACAGAGCAGTAGGAAAATATTTTAATTTATACT  300

seq1  AAAGATTTACTGGGTAGGATGAGATGCTTGAAAACAGAACTGTTATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTACTGGGTAGGATGAGATGCTTGAAAACAGAACTGTTATCTCT  350

seq1  TGCAGGGTGGGGGTCAACTTGCTCATAGTTCTGTGGGTCATAGTACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGTGGGGGTCAACTTGCTCATAGTTCTGTGGGTCATAGTACTTAT  400

seq1  GGGGCATACAATAAATCAATACTGGATGAATGAGCTGGCTTCCCACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATACAATAAATCAATACTGGATGAATGAGCTGGCTTCCCACTGCT  450

seq1  GTCCCCTCTCACTTGGCGGACATAAATTTAACTTTAAGGTTATACACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCTCACTTGGCGGACATAAATTTAACTTTAAGGTTATACACAAG  500

seq1  AAAGACACAGCTATTCTTCTTCATTCTGGTTCAATATCTGTATCATCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACAGCTATTCTTCTTCATTCTGGTTCAATATCTGTATCATCAGC  550

seq1  AACATGCATTTGCTGCCTGCTACCTTCCTGCTGAGGGTTTGAAGTAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCATTTGCTGCCTGCTACCTTCCTGCTGAGGGTTTGAAGTAAGGC  600

seq1  ATAAGTGGACAATTAGGGGGTTAGAAGAGGCAATAC-TTTTGACATTACT  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAAGTGGACAATTAGGGGGTTAGAAGAGGCAATACTTTTTGACATTACT  650

seq1  GCAACTGAAGTAATAATAAACTGACATACTACACATGTGTGTAAACATAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGAAGTAATAATAAACTGACATACTACACATGTGTGTAAACATAC  700

seq1  ATGCTCTCAGTACACACATACACACACACACACACACACACACACACACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCAGTACACACATACACACACACACACACACACACACACACACA  750

seq1  CAGGATACTCAAGTTAATAGAAATCCTAAATGTTGATGATAAAGCAGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACTCAAGTTAATAGAAATCCTAAATGTTGATGATAAAGCAGACT  800

seq1  GGAATGAAGCCAGCAAAAATGTCATTC-TCCTGCTTAATGGAAAG-ATTA  847
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  GGAATGAAGCCAGCAAAAATGTCATTCTTCCTGCTTAATGGAAAGAATTA  850

seq1  ATAAATCAAACCCATGAATTATATATGACGTCTCACCCAGGATCTTGGTT  897
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAATTCAAACCCATGAATTATATATGACGTCTCACCCAGGATTTTGGTT  900

seq1  ATTTTTAGCACTAGT-GAGTAACAGGATGCTCCAGGTAGAGCTTGTGCCA  946
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGCACTAGTGGAGTAACAGGATGCTCCAGGTAGAGCTTGTGCCA  950

seq1  GCACCATAACTGGAGGAGCAAGTGCCAAGGAAAACGGGGCTGGGATGTCT  996
      ||||||| |||||||||||||||| ||||||||||||||||||  | |||
seq2  GCACCAT-ACTGGAGGAGCAAGTG-CAAGGAAAACGGGGCTGGATTTTCT  998

seq1  CAATCAAGGGAAGCAGAGACAAATCCTCAGCCTCCTCCAGAAGACAGAGA  1046
      ||||||| ||||||| |||||||| ||||| || |||   |||||  |||
seq2  CAATCAA-GGAAGCAAAGACAAAT-CTCAG-CTTCTCAGAAAGACGAAGA  1045

seq1  CAGCTTTGCTCGT-GTGCAAAATTGAATGGCAAATGGCATGG-AAGGAGC  1094
       ||| |||||||| |||| |||||||||||| |||||||||| |||||| 
seq2  AAGC-TTGCTCGTGGTGC-AAATTGAATGGCCAATGGCATGGAAAGGAG-  1092

seq1  CCCAAGTGCAGGA  1107
       || |||||||||
seq2  TCCTAGTGCAGGA  1105