BAC Information

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BAC

Clone NameB6Ng01-161M23
ChromosomeX (Build37)X (Build37)
Map Location 143,707,715 - 143,708,75131,329,630 - 31,330,718
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666730, EG245663, Htr2c
Downstream geneIl13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161M23.bB6Ng01-161M23.g
ACCDH954821DH954822
length1,0281,073
definitionDH954821|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M23, 5' end.DH954822|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(143,707,715 - 143,708,751)(31,329,630 - 31,330,718)
sequence
gaattcttggtaccaatgattcaatcttaagcacactagagctgagcctg
aatatttgagataaactcctcactcacaagctcagttctataccttgctt
catcagagtggcatgcttcagacccctccagtgtagaaggaggaagaata
aagtgtttttgctcaaagtcagctgactcttttggcatacctttaatgtc
aggggctactatggttagaggaagtaaggcctaggccctcttcaaaagat
aacccaactgggtgtcagcccccttaaagttatgggatactttacttctg
agagaacatgacttgatggaggtgctgtttatgctggaggtataaattat
cctgggtctagaaatgttcatctaagtccccattgtgacttcatcaatgc
tattgcatgctgatagtaaaagagccatatttgtggtcttcttaagatat
tgttgaagtctgaggtcctttgcttatcatgtcatatgtatcagggcaca
ttcagtcattgaggacctatgtgacacctttgttctgaagtggtaattct
gagggcaattaaagaatttctgaggtttgtagtaatcatatgttaatgct
gccttcaactctgtggagtttctaacatatttgatgttgaggtggtacat
ctgaaacccccttgggttattggtggaagttttgagtcacacaggttcta
tttcatgtatgtgggtgtactgtcattgtcttcagacacaccataaggtg
gcatttgatcccattccagatggttgtgagccaccatgtggttgctggaa
attgaactcaggacctgtggaagagcagtcagtgcttttaacttctgagc
atctctccagccccagcacattggttctagacaggtagattaacgtcact
tagaccattgagaagatctgagatccctgctcagaatgggcagatcagag
tcctcttagtcatacagaagtttggacgatcttgtgtctagctgtagatc
tgaacttactagaagaagaatgcctgga
ttatctaaaaagtcccaggtgccaagtggagacaagaaggtgagggtgac
actgctcccatcaaagggtcagccagatcttcagggtgagagttgatgaa
ggtctggtttcccacagtttggtctctcacaagtggtaattaagaagaga
ccagcatcactgagttgaagtcatctgggaagtattttctgagagcagaa
agaagctatgctcagagatagcccaggttgtatcttctgttgcagctgga
gttggtaatttgtaagaatcacccagatggtactggttttgaagacataa
aggtgtcttggataaaagctgatgcttggcagtagttgagacttgtaacc
atgaagagagcctatgagaggttattggtaaagcctagttgtagcagaag
acccaagagtattggagatgccagtacaatgggatgatcaccaaaaacag
cagcagcaaaccacccccacagtgacacacctactccaatcaggccacac
caccactccctgggccaagcatatacaaaccatcacagcactatagatga
gttgtttattagtgtttaggtatatccttacccagatgagcaatccattt
ggcagtatcctcatgtagaaataaaatgctgaggcaaagaatattgattt
tctgggcaatatggcctttgtgaattcattgctaaccctagtgtctaaag
cacatgacaacagtaaagatcctatcttgcccctcccaccatatgattaa
tgtcattaataaattttctgctgtctcaagcaaattcattggagggtaaa
taccttaacattcagctggatggtggtggctcatgcttttaatcccagaa
cacaggagcagatctaggcatatctctgagtttgaggtcagcctggtcta
tatagtatgtctcagacagccaggctacaggagagatcctgtcttggaaa
caataatatacaatttaatataacaaacattgcacattcttactggaaag
tattggctatagatgctgaaaggaagacctttttaaagctaaactatatg
ctgcagcaaattgggatatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_143707715_143708751
seq2: B6Ng01-161M23.b_48_1075 (reverse)

seq1  TCCAGGCATTCTTCTT-TAGTAAGGTTCAGACCTACAGCTTAAGAACCAC  49
      |||||||||||||||| |||||| ||||||| ||||||||  |||  || 
seq2  TCCAGGCATTCTTCTTCTAGTAA-GTTCAGATCTACAGCT--AGACACA-  46

seq1  AGATCTTCCAAACTACTGTATGGACCAAGGGGACTTCTGATCTGCCCATT  99
      ||||| |||||||| |||||| ||| ||| |||| |||||||||||||||
seq2  AGATCGTCCAAACTTCTGTAT-GACTAAGAGGAC-TCTGATCTGCCCATT  94

seq1  CTGAACCAGGGATCCCATATCTTACCCAATAGCCTAAGTGACCTTAATCT  149
      ||| | |||||||| || ||||| | |||| | ||||||||| |||||| 
seq2  CTG-AGCAGGGATCTCAGATCTT-CTCAATGGTCTAAGTGACGTTAATC-  141

seq1  TACCTGTCTAGAACCAATGTGCTGGGACTGAAGATATGGCTCAGCAGTTA  199
      |||||||||||||||||||||||||| ||| ||| || |||||| |||||
seq2  TACCTGTCTAGAACCAATGTGCTGGGGCTGGAGAGAT-GCTCAGAAGTTA  190

seq1  AAAGCACTGACTGCTCTTCCACAGGTCCTGAGTTAAATTCCCAGCAACCA  249
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  AAAGCACTGACTGCTCTTCCACAGGTCCTGAGTTCAATTTCCAGCAACCA  240

seq1  CATGGTGGCTCACAATCATCTGTAATGAGACCCGATGCCACTTTATGGTG  299
      ||||||||||||||| |||||| |||| || |  ||||||| ||||||||
seq2  CATGGTGGCTCACAACCATCTGGAATGGGATCAAATGCCACCTTATGGTG  290

seq1  TGTCTGAAGACAATGACAGTATACCCACATACATGAAATAGAACCTATGT  349
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TGTCTGAAGACAATGACAGTACACCCACATACATGAAATAGAACCTGTGT  340

seq1  GCCTCACAACTTTCACCAATAACTCAAGGGGGTTTCAGATGTACCCCCTC  399
      | |||| ||||| |||||||||| ||||||||||||||||||||| ||||
seq2  GACTCAAAACTTCCACCAATAACCCAAGGGGGTTTCAGATGTACCACCTC  390

seq1  AACATCAAATATGTTAGAAACTCCCCAGTGTTGAAGGTATCATTAACACA  449
      |||||||||||||||||||||||| ||| |||||||| | |||||||| |
seq2  AACATCAAATATGTTAGAAACTCCACAGAGTTGAAGGCAGCATTAACATA  440

seq1  TGAGAACCAGAAACCTCAGAAATTCTTTAATTGCCCTGAGAATTACCACT  499
      |||  || | ||||||||||||||||||||||||||| ||||||||||||
seq2  TGATTACTACAAACCTCAGAAATTCTTTAATTGCCCTCAGAATTACCACT  490

seq1  TCAGAACAATGGTGTCACATAGGTTCTCAATGACTGAAGATGCCCTGATA  549
      ||||||||| |||||||||||||| |||||||||||||  ||||||||||
seq2  TCAGAACAAAGGTGTCACATAGGTCCTCAATGACTGAATGTGCCCTGATA  540

seq1  CATACGACATGATAATCAAAGAACTTCTGACCTCAACAATATCTTTAGAA  599
      |||| |||||||||| ||||| || || ||| ||||||||||||| ||||
seq2  CATATGACATGATAAGCAAAGGACCTCAGACTTCAACAATATCTTAAGAA  590

seq1  GGCCACAAATATGGCTCTTTTACTATAAGCATGCAATAGCATTGATGAAG  649
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACCACAAATATGGCTCTTTTACTATCAGCATGCAATAGCATTGATGAAG  640

seq1  TCACAATGGGGACTCAGATGTACCCTTCTAGACCCAGGATAATTTATACC  699
      |||||||||||||| ||||| ||  |||||||||||||||||||||||||
seq2  TCACAATGGGGACTTAGATGAACATTTCTAGACCCAGGATAATTTATACC  690

seq1  CCCAGCGTAAATAGCAACTCCATCAAGTCATGTCCCCTCAGAAGTAAAGT  749
       ||||| |||| |||| |||||||||||||||| | ||||||||||||||
seq2  TCCAGCATAAACAGCACCTCCATCAAGTCATGTTCTCTCAGAAGTAAAGT  740

seq1  ATCCCATAACTTCAAGGGGGCTGATACCCAGTTGGATTATCTTTTGAAGA  799
      |||||||||||| ||||||||||| |||||||||| ||||||||||||||
seq2  ATCCCATAACTTTAAGGGGGCTGACACCCAGTTGGGTTATCTTTTGAAGA  790

seq1  GGGCCTAGGCCTTACTTCCTCTAACCATAGTAGCCACTGACATTAAGGGT  849
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GGGCCTAGGCCTTACTTCCTCTAACCATAGTAGCCCCTGACATTAAAGGT  840

seq1  ATGCCAAAGGGGTCAGCTGACCTTGAGTAAAAACACTTTATTCTTCCTCC  899
      |||||||| | |||||||||| ||||| ||||||||||||||||||||||
seq2  ATGCCAAAAGAGTCAGCTGACTTTGAGCAAAAACACTTTATTCTTCCTCC  890

seq1  TTCTGCACTAGAGGGGTCTAAGGCATGCCCCTCTGATGAAGCAAGGTATA  949
      |||| |||| ||||||||| | ||||||| ||||||||||||||||||||
seq2  TTCTACACTGGAGGGGTCTGAAGCATGCCACTCTGATGAAGCAAGGTATA  940

seq1  GAACTGACCTTGTGAGTGAGGAGTTTATCTCAAATATTCAGGTTCAGCTC  999
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  GAACTGAGCTTGTGAGTGAGGAGTTTATCTCAAATATTCAGGCTCAGCTC  990

seq1  TAGTGTGCTTAAGACTGAATCCTTGGTACCAAGAATTC  1037
      |||||||||||||| |||||| ||||||||||||||||
seq2  TAGTGTGCTTAAGATTGAATCATTGGTACCAAGAATTC  1028

seq1: chrX_31329630_31330718
seq2: B6Ng01-161M23.g_80_1152

seq1  TTATCTAAACAGTCCCAGGTGCCAAGTGGAGACAAGAAGGTGAGGGTGAC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAAAAAGTCCCAGGTGCCAAGTGGAGACAAGAAGGTGAGGGTGAC  50

seq1  ACTGCTCCCATCAAAGGGTCAGCCAGATCTTCAGGGTGAGAGTTGATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCCATCAAAGGGTCAGCCAGATCTTCAGGGTGAGAGTTGATGAA  100

seq1  GGTCTGGTTTCCCACAGTTTGGTCTCTCACAAGTGGTAATTAAGAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGTTTCCCACAGTTTGGTCTCTCACAAGTGGTAATTAAGAAGAGA  150

seq1  CCAGCATCATTGAGTTGAAGTCTTCTGGGAAGTATTTTCTGAGAGCAGAA  200
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CCAGCATCACTGAGTTGAAGTCATCTGGGAAGTATTTTCTGAGAGCAGAA  200

seq1  AGAAGCTATGCTCCAGAGATAGCCCAGGTTGTATCTTCTGTTGCAGCTGG  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTATGCT-CAGAGATAGCCCAGGTTGTATCTTCTGTTGCAGCTGG  249

seq1  AGTTGGTAATTTGTAAGAATCACCCAGATGGTACTGGTTTTGAAGACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTAATTTGTAAGAATCACCCAGATGGTACTGGTTTTGAAGACATA  299

seq1  AAGGTGTCTTGGATAACAGCTGAGGCTTGGCAGTAGTTGAGACTTGTAAC  350
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  AAGGTGTCTTGGATAAAAGCTGATGCTTGGCAGTAGTTGAGACTTGTAAC  349

seq1  CATGAAGAGAGCCTATGAGAGGCTATTGGTAAAGCCTAGTTGTAGCAGAA  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATGAAGAGAGCCTATGAGAGGTTATTGGTAAAGCCTAGTTGTAGCAGAA  399

seq1  GACCCAAGAGTATTGGAGATGCCAGTACAATGGGATGATCACCAAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAGAGTATTGGAGATGCCAGTACAATGGGATGATCACCAAAAACA  449

seq1  GCAGCAGCAAACCACCCCCACAGTGACACACCTACTCCAATCAGGCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCAAACCACCCCCACAGTGACACACCTACTCCAATCAGGCCACA  499

seq1  CCACCACTCCCTGGGCCAAGCATATACAAACCATCACAGCACTATAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTCCCTGGGCCAAGCATATACAAACCATCACAGCACTATAGATG  549

seq1  AGTTGTTTATTAGTGTTTAGGTATATCCTTACCCAGATGAGCAATCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTATTAGTGTTTAGGTATATCCTTACCCAGATGAGCAATCCATT  599

seq1  TGGCAGTATCCTCATGTAGAAATAAAATGCTGAGGCAAAGAATATTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTATCCTCATGTAGAAATAAAATGCTGAGGCAAAGAATATTGATT  649

seq1  TTCTGGGCAATATGGCCTTTGTGAATTCATTGCTAACCCTAGTGTCCAAA  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCTGGGCAATATGGCCTTTGTGAATTCATTGCTAACCCTAGTGTCTAAA  699

seq1  GCACATGACAACAGTAAAGATCCTATCTTGCCCCTCCCACCATATGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGACAACAGTAAAGATCCTATCTTGCCCCTCCCACCATATGATTA  749

seq1  ACGTCATTAATAAATTTTCTGCTGTCTCAAGCAAATTCATTGGAGGTTAA  800
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTCATTAATAAATTTTCTGCTGTCTCAAGCAAATTCATTGGAGGGTAA  799

seq1  ATATCTTAACATTCAGCTGGATGGTGATGGCTCATGCCTTTAATCCCAGA  850
      ||| |||||||||||||||||||||| |||||||||| ||||||||||||
seq2  ATACCTTAACATTCAGCTGGATGGTGGTGGCTCATGCTTTTAATCCCAGA  849

seq1  ACTCAGGAGGCAAATCTAGGCATATCTCTGCGTTTGAGGTCAGCCTGGTC  900
      || ||||| ||| ||||||||||||||||| |||||||||||||||||||
seq2  ACACAGGA-GCAGATCTAGGCATATCTCTGAGTTTGAGGTCAGCCTGGTC  898

seq1  TATATAGTATGTCTCAGGACAGCCAGGGCTACAGGGAGAGATCCTGTCTT  950
      |||||||||||||||| |||||||| ||||||| ||||||||||||||||
seq2  TATATAGTATGTCTCA-GACAGCCA-GGCTACA-GGAGAGATCCTGTCTT  945

seq1  GGAAAACAAATAAAATAATACAAATATAAATATAAACAAAACAATGCAAC  1000
      ||||       | ||||||| | |  | |||||||   ||||| ||| ||
seq2  GGAA-------ACAATAATATACAATTTAATATAA--CAAACATTGC-AC  985

seq1  ATTCTTAACTGGAAAGTATTTGGCTATAGATGCTGAATGAAAGCCTTTTC  1050
      |||||| ||||||||||| |||||||||||||||||| | ||| | ||| 
seq2  ATTCTT-ACTGGAAAGTA-TTGGCTATAGATGCTGAAAGGAAGACCTTTT  1033

seq1  TAAAGCTAAACTATATGCTGTCAGC-AATTGGTA-ATTTAT  1089
      |||||||||||||||||||| |||| |||||| | ||||||
seq2  TAAAGCTAAACTATATGCTG-CAGCAAATTGGGATATTTAT  1073