BAC Information

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BAC

Clone NameB6Ng01-161O11
ChromosomeX (Build37)
Map Location 154,663,448 - 154,779,085
singlet/doubletdoublet
Overlap geneLOC667487
Upstream genePhex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34, Cnksr2, EG667483, LOC671033
Downstream geneLOC436243, LOC100040371, Rps6ka3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161O11.bB6Ng01-161O11.g
ACCDH954889DH954890
length1,1021,117
definitionDH954889|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O11, 5' end.DH954890|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,663,448 - 154,664,565)(154,777,942 - 154,779,085)
sequence
gaattctcacctgaggaatatggaatcggctgagaaagacctgaaaaaat
gttcagcatccttaatcatcagggtaatgcaaatcaaaacaaccctgaga
ttccacctcataccagtcagaatgcctaaatcaaaaccacagatgacagc
agatgctgacaaggatgtggataaagaagaacactcctccattgctggtg
ggattgcaagcttgtacaaccactctagaaatcagtctggtggtttctca
gaaaattggccatagtactaccaggtgatctagcaatacctttcctgggc
acatatccagaagatgttccaactggttttcctgtccagcaggactcagt
tatttatgggttcaaggggaaccacaaacctgcaagagaaatgtttgggg
aaaaaaagagggagaccaaggaacattcctgtcaatgtctgaatttatta
agctgaaaagccaggttatgagcacacagtcagggaaaatagggaggggc
tgagagggaattaacaaagaacaaagaagtagtcatctggggacaagaag
gctaaattctgatagcaggctggaggcactctgattcttatctcaagaat
gtagattctgccttaacagcacagggtgtcaagctgggctcaggacataa
ctcacgtccttggaagttttgggagtcaggaagagataaggaagagggga
ctataattcagctttttagggtctttggtgccaggaaagggacagggagg
aggaggtgactggctccttaacacaaggccatttggcttattagggtggg
aaactgcaaaagccttgctttctcacagtattgtttctcagtggtaagaa
cgacacatgctccactatgttcatagcagccttatttataatagccagaa
gctggaaagaacccatatgtccctcacagagatgatgcagaaaatgtggt
acatttacacatgagtactactcagctattaaaagaatgatttatgaaat
ctaggcacatgatgaccttgagggcatcatcctgagtgaataacgatcca
aaggaactacatgaatatgtactcactgaatagtgatattagccagaaac
tt
gaattctacatatggatttgcaggcatcaggaagagagagactatgggct
tggaatggactttttgaaacctcaaagttcttttcaaaaggccagatctc
ctaatccttccaaatagtgctactccctggtgactaagtattcaaatcta
tgagcctattagggccattcttattcaagccaccatatatgttttgtcca
tgtcaagtcaggagtgggaaagtatgtgaagcaaacatactttgctgagc
atctaaatcagctttgtttgaacagtaggaaaaccatcctttatagccaa
tattgcaagtgcagcaatatttcctgaggcctggaatttcaatcttggtc
ttttatatcctactgttccattgtgtcaattaatttgggttgttttattt
ttccagttagaggaaataaaaggaatctcaattgaaatgggaagcttcct
cacacttttgccctattgttacatttaataatttttaaaatcgttattat
aaccacatttcagaactataaaaaatcaagtgctaataagaacagcatat
ttgcttcaatttacgtgggagaaagcaatagaaaacaaattatgcaacca
aatgcatgtagattcttatctatgcaaaattggcaccttgagatcctggt
ttatgtcattctaaagctgacatcatacactcagcattccttttctaggt
atagtattttaatatgaatagaatacaaaaagaaacgaatgtaacaaaga
gctgtgcatcagctacctatcttaagaaataagtattagaaaacacaaga
aactttcattttatcccttctgatattcccctgtttcagaatttatgttc
attgattgattactctttatgtgaaaatattattgaaattttaaattaat
tttggtatctttaatatgtttgggatactggttttctctcataaacatag
tacttctctctttttggcttcttcaaatcatatgataacagttttacttt
tctcataaaggtctacatatcttttgttagatatttatattaggcatctg
tagttttcgaagataactcttctaaaattatattctgaatgtatactagt
aattaaaatacaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_154663448_154664565
seq2: B6Ng01-161O11.b_46_1147

seq1  GAATTCTCACCTGAGGAATATGGAAT-GGCTGAGAAAGACCTGAAAAAAT  49
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATATGGAATCGGCTGAGAAAGACCTGAAAAAAT  50

seq1  GTTCAGCATCCTTAATCATCAGGGTAATGCAAATCAAAACAACCCTGAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCATCCTTAATCATCAGGGTAATGCAAATCAAAACAACCCTGAGA  100

seq1  TTCCACCTCATACCAGTCAGAATGCCTAAATCAAAACCACAGATGACAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCATACCAGTCAGAATGCCTAAATCAAAACCACAGATGACAGC  150

seq1  AGATGCTGACAAGGATGTGGATAAAGAAGAACACTCCTCCATTGCTGGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGACAAGGATGTGGATAAAGAAGAACACTCCTCCATTGCTGGTG  200

seq1  GGATTGCAAGCTTGTACAACCACTCTAGAAATCAGTCTGGTGGTTTCTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAAGCTTGTACAACCACTCTAGAAATCAGTCTGGTGGTTTCTCA  250

seq1  GAAAATTGGCCATAGTACTACCAGGTGATCTAGCAATACCTTTCCTGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGCCATAGTACTACCAGGTGATCTAGCAATACCTTTCCTGGGC  300

seq1  ACATATCCAGAAGATGTTCCAACTGGTTTTCCTGTCCAGCAGGACTCAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCCAGAAGATGTTCCAACTGGTTTTCCTGTCCAGCAGGACTCAGT  350

seq1  TATTTATGGGTTCAAGGGGAACCACAAACCTGCAAGAGAAATGTTTGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGGGTTCAAGGGGAACCACAAACCTGCAAGAGAAATGTTTGGGG  400

seq1  AAAAAAAGAGGGAGACCAAGGAACATTCCTGTCAATGTCTGAATTTATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAGGGAGACCAAGGAACATTCCTGTCAATGTCTGAATTTATTA  450

seq1  AGCTGAAAAGCCAGGTTATGAGCACACAGTCAGGGAAAATAGGGAGGGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAAGCCAGGTTATGAGCACACAGTCAGGGAAAATAGGGAGGGGC  500

seq1  TGAGAGGGAATTAACAAAGAACAAAGAAGTAGTCATCTGGGGACAAGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGAATTAACAAAGAACAAAGAAGTAGTCATCTGGGGACAAGAAG  550

seq1  GCTAAATTCTGATAGCAGGCTGGAGGCACTCTGATTCTTATCTCAAGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATTCTGATAGCAGGCTGGAGGCACTCTGATTCTTATCTCAAGAAT  600

seq1  GTAGATTCTGCCTTAACAGCACAGGGTGTCAAGCTGGGCTCAGGACATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTCTGCCTTAACAGCACAGGGTGTCAAGCTGGGCTCAGGACATAA  650

seq1  CTCAGGTCCTTGGAAGTTTTGGGAGTCAGGAAGAGATAAGGAAGAGGGGA  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTCCTTGGAAGTTTTGGGAGTCAGGAAGAGATAAGGAAGAGGGGA  700

seq1  CTATAATTCAGCTTTTTAGGGTCTTTGGTGCCAGG-AAGGGACAGGGAGG  748
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTATAATTCAGCTTTTTAGGGTCTTTGGTGCCAGGAAAGGGACAGGGAGG  750

seq1  AGGAGGTGACTGGCTCCTTAACACAAGGCCATTTGGCTTATTAGGGTGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGACTGGCTCCTTAACACAAGGCCATTTGGCTTATTAGGGTGGG  800

seq1  AAACTGCAAAAGCCTTGCTTTCTCACAGTATTGTTTCTCAGTGGTAAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCAAAAGCCTTGCTTTCTCACAGTATTGTTTCTCAGTGGTAAGAA  850

seq1  GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA  900

seq1  GCTGGAAAGAACCCATATGTCCCTCAACAGAGGAATGGATGCAGAAAATG  948
      ||||||||||||||||||||||||| ||||||  || |||||||||||||
seq2  GCTGGAAAGAACCCATATGTCCCTC-ACAGAG--AT-GATGCAGAAAATG  946

seq1  TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT  998
      |||||||||||||||   |||||||||||||||||| ||||||||| |||
seq2  TGGTACATTTACACA--TGAGTACTACTCAGCTATT-AAAAGAATG-ATT  992

seq1  TATGAAATTCCTAGGCACATGGATGGACCTGGAGGGCATCATCCTGAGTG  1048
      ||||||||  |||||||||| ||| ||||| |||||||||||||||||||
seq2  TATGAAAT--CTAGGCACAT-GAT-GACCTTGAGGGCATCATCCTGAGTG  1038

seq1  AGATAACCGAATCACAAAAGAACTTACATG-ATATGTACTCACTGATAAG  1097
      | |||||   ||| |||| |||| |||||| |||||||||||||||  ||
seq2  A-ATAAC--GATC-CAAAGGAAC-TACATGAATATGTACTCACTGAATAG  1083

seq1  TGGATATTAGCCCAGAAACTT  1118
      | |||||||| ||||||||||
seq2  T-GATATTAG-CCAGAAACTT  1102

seq1: chrX_154777942_154779085
seq2: B6Ng01-161O11.g_69_1185 (reverse)

seq1  TCTATTGTATTTTTATATACTAGTAATACATTCAGAAATTATAAATTTTT  50
      ||||||||||||| || ||||||| ||||||||||||  |||||   |||
seq2  TCTATTGTATTTTAAT-TACTAGT-ATACATTCAGAA--TATAA---TTT  43

seq1  AAGAAGATGTTATCTTCCAAAAATACTTAACAAGATGCCTATTAATAAAT  100
       |||||| ||||||||| |||| |||      ||||||||| | ||||||
seq2  TAGAAGA-GTTATCTTCGAAAACTAC------AGATGCCTAAT-ATAAAT  85

seq1  ATCTAACAAAAGATATGTAGAACCTTTATGGAGAAAAGTAAAAACTGTTA  150
      |||||||||||||||||||| |||||||| ||||||||| ||||||||||
seq2  ATCTAACAAAAGATATGTAG-ACCTTTAT-GAGAAAAGT-AAAACTGTTA  132

seq1  TCATATGAATTTGAAGAAAGCCCAAAAAAGGAAGAGAAGTACTATGTTTA  200
      ||||||| |||||||| |||||  ||||||  ||||||||||||||||||
seq2  TCATATG-ATTTGAAG-AAGCC--AAAAAG--AGAGAAGTACTATGTTTA  176

seq1  TGGAGAGGAAAACCCAGTATTCCCAAACATATTAAAGATACCAAAATTAA  250
      | |||||  ||| |||||| ||||||||||||||||||||||||||||||
seq2  T-GAGAG--AAAACCAGTA-TCCCAAACATATTAAAGATACCAAAATTAA  222

seq1  TTTAAAATTTCAAT-ATATTTTCACATAAAAGAGTAATCAATCAATGAAC  299
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  TTTAAAATTTCAATAATATTTTCACAT-AAAGAGTAATCAATCAATGAAC  271

seq1  ATAAATTCTGAAACAGGGGAATATCAGAAGGGAT-AAATGAAAGTTTCTT  348
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAAATTCTGAAACAGGGGAATATCAGAAGGGATAAAATGAAAGTTTCTT  321

seq1  GTGTTTTCTAATACTTATTTCTTAAGATAGGTAGCTGATGCACAGCTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTAATACTTATTTCTTAAGATAGGTAGCTGATGCACAGCTCTT  371

seq1  TGTTACATTCGTTTCTTTTTGTATTCTATTCATATTAAAATACTATACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATTCGTTTCTTTTTGTATTCTATTCATATTAAAATACTATACCT  421

seq1  AGAAAAGGAATGCTGAGTGTATGATGTCAGCTTTAGAATGACATAAACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAATGCTGAGTGTATGATGTCAGCTTTAGAATGACATAAACCA  471

seq1  GGATCTCAAGGTGCCAATTTTGCATAGATAAGAATCTACATGCATTTGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCAAGGTGCCAATTTTGCATAGATAAGAATCTACATGCATTTGGT  521

seq1  TGCATAATTTGTTTTCTATTGCTTTCTCCCACGTAAATTGAAGCAAATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATTTGTTTTCTATTGCTTTCTCCCACGTAAATTGAAGCAAATAT  571

seq1  GCTGTTCTTATTAGCACTTGATTTTTTATAGTTCTGAAATGTGGTTATAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTTATTAGCACTTGATTTTTTATAGTTCTGAAATGTGGTTATAA  621

seq1  TAACGATTTTAAAAATTATTAAATGTAACAATAGGGCAAAAGTGTGAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGATTTTAAAAATTATTAAATGTAACAATAGGGCAAAAGTGTGAGGA  671

seq1  AGCTTCCCATTTCAATTGAGATTCCTTTTATTTCCTCTAACTGGAAAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCATTTCAATTGAGATTCCTTTTATTTCCTCTAACTGGAAAAAT  721

seq1  AAAACAACCCAAATTAATTGACACAATGGAACAGTAGGATATAAAAGACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCCAAATTAATTGACACAATGGAACAGTAGGATATAAAAGACC  771

seq1  AAGATTGAAATTCCAGGCCTCAGGAAATATTGCTGCACTTGCAATATTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAAATTCCAGGCCTCAGGAAATATTGCTGCACTTGCAATATTGG  821

seq1  CTATAAAGGATGGTTTTCCTACTGTTCAAACAAAGCTGATTTAGATGCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGGATGGTTTTCCTACTGTTCAAACAAAGCTGATTTAGATGCTC  871

seq1  AGCAAAGTATGTTTGCTTCACATACTTTCCCACTCCTGACTTGACATGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTATGTTTGCTTCACATACTTTCCCACTCCTGACTTGACATGGA  921

seq1  CAAAACATATATGGTGGCTTGAATAAGAATGGCCCTAATAGGCTCATAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATATATGGTGGCTTGAATAAGAATGGCCCTAATAGGCTCATAGA  971

seq1  TTTGAATACTTAGTCACCAGGGAGTAGCACTATTTGGAAGGATTAGGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATACTTAGTCACCAGGGAGTAGCACTATTTGGAAGGATTAGGAGA  1021

seq1  TCTGGCCTTTTGAAAAGAACTTTGAGGTTTCAAAAAGTCCATTCCAAGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTTTTGAAAAGAACTTTGAGGTTTCAAAAAGTCCATTCCAAGCC  1071

seq1  CATAGTCTCTCTCTTCCTGATGCCTGCAAATCCATATGTAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCTCTCTCTTCCTGATGCCTGCAAATCCATATGTAGAATTC  1117