BAC Information

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BAC

Clone NameB6Ng01-162I01
ChromosomeX (Build37)
Map Location 121,685,411 - 121,704,437
singlet/doubletdoublet
Overlap genenone
Upstream geneEG625591, LOC665325, EG382265, LOC665364, EG546368, LOC100038940, LOC100038941, EG625699, LOC100038942, LOC100039828, EG434843
Downstream geneEG665463, EG665522, LOC100038969, LOC100038978, EG665579, EG665611, EG626048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162I01.bB6Ng01-162I01.g
ACCDH955326DH955327
length1,0141,213
definitionDH955326|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I01, 5' end.DH955327|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,685,411 - 121,686,054)(121,703,232 - 121,704,437)
sequence
gaattctcaactgaggaatacagaatgtaggagaagcaaaaagatgttca
acatccttaatcatcagggaggtacaaaccaaaacaaccttggattccat
ccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagtc
gatgctggcagggatgtggagaaagaggaacactcctccattattggtga
gattgcaagctggtacaaccactctggaaatcagtctggtggttcctcag
aacattggacatagtaatacaggaagatccagcaatacctctcctgggca
tatattcagaagatgttccaacttgtaataaggacacatgctccactatg
ttcatagcagcctaatttataatagccagaagctggaatctctcacctcc
caggtctctggtgcattctagggcatccttgaaacatccgatttcctgag
tttgcctatttccattctttctgctggccctcaagacttcagtctttttc
ccttatccaataccagatcagaatccatccccccctctacccctttccac
tttccctcccatgttcattcttccctccccacttgtggttgctttcttct
ccctcccaattaggactgaggtgtcttcacttgggtacttcagtttgttg
agctctttgagttctgtggactgtatcctgtgttttctgtattttttgtt
gttgtttgtttggtttggtttggtttggttttgggtttttggctaatatc
cattttttagtgaatacataccatgaatgttctttttgtgtctgagttac
ctcactaagcatggtatttttctagttccatctgtttgcctataaagtca
ggatgtcctcattttttatgtcctcattcttaatagctaagatgttatgt
tctgggtccacagggaaacccagatgagcccaagaacttgcaaagtccta
ccgaaatcccaaaaagtcttatttttcaggtttaaacttggttcgcccct
ttagcactccctgc
gaattctttacatgattacaaaagaggttgaatatacatgacatagactt
tagttgaattgaacttttataaagagaactttgagaagaaataatattta
ctctatgtgtgctttcaaaaaatagaatggtttgcatggaacaagttagt
attggaaggattagaagttccaagctatccttggttacatactaagtttg
ggccagcctaggctatatgacaatctgtctgaaaataggaaattactgga
accagtagtttatctttatctttatgaatcctgtactttggagactgaat
catgagcaatatcagaagtacaaggactaacagtgccagaaagtataaac
agaatttcccaaacaaaaataatttaagagttatacttaggggtttgatt
atgttgctacagaataaaagcactttgagatgagagtggtcagtaatgag
gagtgagtattgctcttgcacaggactcacgttgggtagctcgcagtcac
cttcagcttgagcttcaggaggcctctagcacctgtgttcatgtgcattt
acttacatacgtatgtatgtaccaacacacacacacacacacacacacac
acacacacaaacttaaataatagggaaaagtaccttgcatctatcagttt
aaaggaagtttgatttaaatgtacttaaaagaggtgcctcataaccaaag
tatgaaatctgctagtcttccacaaattaggtgactcagagccactagtc
aaataaattacaccctagacatgggcatccatgaggtccactggataaat
gtggatagagattgatggtagagctattggattatgtaaggggaggctta
aataaaactgatagattcacagactcatgtgatataaagctggcttttgt
ttgtgtgttggtattatatagtattataatccttacatacttgagacata
tttcatatagttcagactgtcctttatctcacttaatagctcatatgact
atgaaccactgatactcctgctttcactttcagaacagctaggaataaag
gagaggtaccagcatgccttacttggatgcagttttagagattcaaccca
aaggcttctaggcatgaaaaatataaaggtatcctaccaattttactttt
ctgcaggcttgcgagctccggttagggacaagtccaagacaacatcctat
ccttaaacacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_121685411_121686054
seq2: B6Ng01-162I01.b_409_1053

seq1  TAATAGCCAGAAGCTGGAATCTCTCACCTCCCAGGTCTCTGGTGCATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCCAGAAGCTGGAATCTCTCACCTCCCAGGTCTCTGGTGCATTCT  50

seq1  AGGGCATCCTTGAAACATCCGATTTCCTGAGTTTGCCTATTTCCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCCTTGAAACATCCGATTTCCTGAGTTTGCCTATTTCCATTCTT  100

seq1  TCTGCTGGCCCTCAAGACTTCAGTCTTTTTCCCTTATCCAATACCAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGCCCTCAAGACTTCAGTCTTTTTCCCTTATCCAATACCAGATC  150

seq1  AGAATCCATCCCCCCCTCTACCCCTTTCCACTTTCCCTCCCATGTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCATCCCCCCCTCTACCCCTTTCCACTTTCCCTCCCATGTTCATT  200

seq1  CTTCCCTCCCCACTTGTGGTTGCTTTCTTCTCCCTCCCAATTAGGACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCCCACTTGTGGTTGCTTTCTTCTCCCTCCCAATTAGGACTGA  250

seq1  GGTGTCTTCACTTGGGTACTTCAGTTTGTTGAGCTCTTTGAGTTCTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTCACTTGGGTACTTCAGTTTGTTGAGCTCTTTGAGTTCTGTGG  300

seq1  ACTGTATCCTGTGTTTTCTGTATTTTTTGTTGTTGTTTGTTTGGTTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCCTGTGTTTTCTGTATTTTTTGTTGTTGTTTGTTTGGTTTGGT  350

seq1  TTGGTTTGGTTTTGGGTTTTTGGCTAATATCCATTTTTTAGTGAATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGGTTTTGGGTTTTTGGCTAATATCCATTTTTTAGTGAATACAT  400

seq1  ACCATGAATGTTC-TTTTGTGTCTGAGTTACCTCACTAAGCATGGTA-TT  448
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  ACCATGAATGTTCTTTTTGTGTCTGAGTTACCTCACTAAGCATGGTATTT  450

seq1  TTCTAGTTCCATCTGTTTGCCTATAAAGTTCAGGATGTCCTCATTTTTTT  498
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  TTCTAGTTCCATCTGTTTGCCTATAAAG-TCAGGATGTCCTCA-TTTTTT  498

seq1  ATGTCCTCATTCTTAATAGCTAAGTATGTTATGCTCTGGGTCCACA-GGA  547
      |||||||||||||||||||||||| |||||||| |||||||||||| |||
seq2  ATGTCCTCATTCTTAATAGCTAAG-ATGTTATGTTCTGGGTCCACAGGGA  547

seq1  AACCCAGATGAGCCCAAGAAC-TGCAAAGT-CTACTGAAACTCACAAAAA  595
      ||||||||||||||||||||| |||||||| |||| |||| || | ||||
seq2  AACCCAGATGAGCCCAAGAACTTGCAAAGTCCTACCGAAA-TC-CCAAAA  595

seq1  AGTCTTA-TTTTCAAGTTTAAACTTGGTTCGCCCACTTAGCACTCACTGC  644
      ||||||| |||||| |||||||||||||||||||  ||||||||| ||||
seq2  AGTCTTATTTTTCAGGTTTAAACTTGGTTCGCCCCTTTAGCACTCCCTGC  645

seq1: chrX_121703232_121704437
seq2: B6Ng01-162I01.g_66_1278 (reverse)

seq1  GATGTG-TTAAGGATAAGAAATGTTGTCTTGGACTTGTCCTTAACAGGAA  49
      |||||| ||||||||| |  |||||||||||||||||||| |||| ||| 
seq2  GATGTGTTTAAGGATAGG--ATGTTGTCTTGGACTTGTCCCTAACCGGA-  47

seq1  GGCTTGCA--GCTGCAG--AAGTAGAATTGGTAGAGTA-CTTTA---TTC  91
       ||| |||   ||||||  ||||| |||||||||  || |||||   || 
seq2  -GCTCGCAAGCCTGCAGAAAAGTAAAATTGGTAGGATACCTTTATATTTT  96

seq1  TCATGCAT-GAAGCC-TTGGGTTTGATCTCTAAAACTGCAT-CAAGTAGG  138
      |||||| | |||||| |||||||  |||||||||||||||| |||||| |
seq2  TCATGCCTAGAAGCCTTTGGGTTGAATCTCTAAAACTGCATCCAAGTAAG  146

seq1  GCATGCTGGTACCTCT-CTTTAATCCTAGCTGTTCTGGAAAGTGAAAGCA  187
      |||||||||||||||| ||||| ||||||||||||| |||||||||||||
seq2  GCATGCTGGTACCTCTCCTTTATTCCTAGCTGTTCT-GAAAGTGAAAGCA  195

seq1  GGAGTATCAGTGGTTCATAGTCATATTGAGCTATTAAGTGAGATAAAGGA  237
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGTATCAGTGGTTCATAGTCATA-TGAGCTATTAAGTGAGATAAAGGA  244

seq1  CAGTCTGAACTATATGAAATATGTCTCAAAGTATGTAAGGATTATAATAC  287
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGTCTGAACTATATGAAATATGTCTC-AAGTATGTAAGGATTATAATAC  293

seq1  TATATAATACCAACACACAAACAAAAGCCAGC-TTATATCACATGAGTCT  336
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATATAATACCAACACACAAACAAAAGCCAGCTTTATATCACATGAGTCT  343

seq1  GTGAATCTATCAGTTTTATTTAAGCCTCCCCTTACATAATCCAATAGCTC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCTATCAGTTTTATTTAAGCCTCCCCTTACATAATCCAATAGCTC  393

seq1  TACCATCAATCTCTATCCACATTTATCCAGTGGACCTCATGGATGCCCAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAATCTCTATCCACATTTATCCAGTGGACCTCATGGATGCCCAT  443

seq1  GTCTAGGGTGTAATTTATTTGACTAGTGGCTCTGAGTCACCTAATTTGTG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGGTGTAATTTATTTGACTAGTGGCTCTGAGTCACCTAATTTGTG  493

seq1  GAAGACTAGCAGATTTCATACTTTGGTTATGAGGCACCTCTTTTAAGTAC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTAGCAGATTTCATACTTTGGTTATGAGGCACCTCTTTTAAGTAC  543

seq1  ATTTAAATCAAACTTCCTTTAAACTGATAGATGCAAGGTACTTTTCCCTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATCAAACTTCCTTTAAACTGATAGATGCAAGGTACTTTTCCCTA  593

seq1  TTATTTAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGT  643

seq1  ACATACATACGTATGTAAGTAAATGCACATGAACACAGGTGCTAGAGGCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACGTATGTAAGTAAATGCACATGAACACAGGTGCTAGAGGCC  693

seq1  TCCTGAAGCTCAAGCTGAAGGTGACTGCGAGCTACCCAACGTGAGTCCTG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGCTCAAGCTGAAGGTGACTGCGAGCTACCCAACGTGAGTCCTG  743

seq1  TGCAAGAGCAATACTCACTCCTCATTACTGACCACTCTCATCTCAAAGTG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGCAATACTCACTCCTCATTACTGACCACTCTCATCTCAAAGTG  793

seq1  CTTTTATTCTGTAGCAACATAATCAAACCCCTAAGTATAACTCTTAAATT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTCTGTAGCAACATAATCAAACCCCTAAGTATAACTCTTAAATT  843

seq1  ATTTTTGTTTGGGAAATTCTGTTTATACTTTCTGGCACTGTTAGTCCTTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTGGGAAATTCTGTTTATACTTTCTGGCACTGTTAGTCCTTG  893

seq1  TACTTCTGATATTGCTCATGATTCAGTCTCCAAAGTACAGGATTCATAAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGATATTGCTCATGATTCAGTCTCCAAAGTACAGGATTCATAAA  943

seq1  GATAAAGATAAACTACTGGTTCCAGTAATTTCCTATTTTCAGACAGATTG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGATAAACTACTGGTTCCAGTAATTTCCTATTTTCAGACAGATTG  993

seq1  TCATATAGCCTAGGCTGGCCCAAACTTAGTATGTAACCAAGGATAGCTTG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAGCCTAGGCTGGCCCAAACTTAGTATGTAACCAAGGATAGCTTG  1043

seq1  GAACTTCTAATCCTTCCAATACTAACTTGTTCCATGCAAACCATTCTATT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTAATCCTTCCAATACTAACTTGTTCCATGCAAACCATTCTATT  1093

seq1  TTTTGAAAGCACACATAGAGTAAATATTATTTCTTCTCAAAGTTCTCTTT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGCACACATAGAGTAAATATTATTTCTTCTCAAAGTTCTCTTT  1143

seq1  ATAAAAGTTCAATTCAACTAAAGTCTATGTCATGTATATTCAACCTCTTT  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTCAATTCAACTAAAGTCTATGTCATGTATATTCAACCTCTTT  1193

seq1  TGTAATCATGTAAAGAATTC  1206
      ||||||||||||||||||||
seq2  TGTAATCATGTAAAGAATTC  1213