BAC Information

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BAC

Clone NameB6Ng01-162N22
ChromosomeX (Build37)
Map Location 161,934,705 - 161,935,619
singlet/doubletsinglet
Overlap genenone
Upstream geneAsb9, Mospd2, Fancb, LOC627045, Glra2
Downstream geneLOC100040753, Gemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N22.g
ACCDH955599
length952
definitionDH955599|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgatgcccctcacccaaaaaaagggtgatgttccctcgcggtt
tcggaatatctgggcttcatgccaacaatttcttccttatctcggtagac
tgtataacaaggtcatctttttctacatgcaattttgtctgcaaatatct
catatttaacacttatctttcaatattttgatttaatttcaaaccagtat
acctatcaatcatggatcatcctgaactcccctatgaattctcttatact
tccttgaaagtcctaataatgtgaatcatggaattcgtctgggaccctca
aaaatgttctccttaattgtgcatttcttagtataatttcccactaggat
tttcatatctctcttgttcctttttctttccacttgagtgtatggggaat
tggtttttaatctcaaatttctgtatatttggacgttctgcagatgtcca
aatcatactgctccagatgcggaacgcattttctgaagatgttcataaag
ggcacattctctacactcatgcatcaacggaaagtagaccacttcatggt
ctggggggggctctttcttcttgcttccggaatatggttcctcggatagt
atgaacaagcatgtgctcatctcatttctccctgtctcacatttcaaact
aatatctcctactaattgcctcattttacactacacaatggttgtttgaa
agatacgtcttttctcaatctgcctgttatctctgagtcgatctgacttc
tttctctttctcgccttctttctttcactcttctgtgaaactgcaagttg
aaccagaccagtgcacacgtcagagacacacgtctacgattttttagaac
tgtttactgattctttgtgagttttaaatcatgcaccaagtccagctcat
ctctctgtgccgtcatatccaagctgtacccttcgcagatgccatcctac
at
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_161934705_161935619
seq2: B6Ng01-162N22.g_102_1016

seq1  TTCCCTCAAGGTTTCAGAATATCTGGGCTTCATGCCAACAGTTTCTTCCT  50
      |||||||  |||||| |||||||||||||||||||||||| |||||||||
seq2  TTCCCTCGCGGTTTCGGAATATCTGGGCTTCATGCCAACAATTTCTTCCT  50

seq1  TATCTCGGTAGACTGTATAACAAGGTCATCTTTTTCTACATGCAATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCGGTAGACTGTATAACAAGGTCATCTTTTTCTACATGCAATTTTG  100

seq1  TCTGCAAATATCAGATATTTAACACTTAAGTTTCAATATTTTGATTTAAT  150
      ||||||||||||  ||||||||||||||  ||||||||||||||||||||
seq2  TCTGCAAATATCTCATATTTAACACTTATCTTTCAATATTTTGATTTAAT  150

seq1  TTCAAACCAGTATACCTAGCAATCATGGATCATCCTGAACTTAATTATGA  200
      |||||||||||||||||| ||||||||||||||||||||||    |||||
seq2  TTCAAACCAGTATACCTATCAATCATGGATCATCCTGAACTCCCCTATGA  200

seq1  ATACAGTTTATACTTCCTTGAAAGTCCTAATAATGTTTTTCATGGAATTC  250
      || |   |||||||||||||||||||||||||||||   |||||||||||
seq2  ATTC-TCTTATACTTCCTTGAAAGTCCTAATAATGTGAATCATGGAATTC  249

seq1  ATCTAGGTCCCTCCAGAATGTTTTCTTTAATTGTTCATTTCTTACTAGAA  300
       ||| || ||||| | |||||| || |||||||| ||||||||| || ||
seq2  GTCTGGGACCCTCAAAAATGTTCTCCTTAATTGTGCATTTCTTAGTATAA  299

seq1  TTTCCCACTAGGATTTTCATATCTCTCTTGTTCCTTTTTCTTTCCACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACTAGGATTTTCATATCTCTCTTGTTCCTTTTTCTTTCCACTTG  349

seq1  AGTATATGGAGAATTATTTTTTAATCTCAAATTTCTGTATATTTGGACAT  400
      ||| ||||| |||||  ||||||||||||||||||||||||||||||| |
seq2  AGTGTATGGGGAATTGGTTTTTAATCTCAAATTTCTGTATATTTGGACGT  399

seq1  TCTGTAGATATCCAAATCATAGTGCTCCAGATGCATAGCACATTTTCTGA  450
      |||| |||| ||||||||||| ||||||||||||  | | ||||||||||
seq2  TCTGCAGATGTCCAAATCATACTGCTCCAGATGCGGAACGCATTTTCTGA  449

seq1  AGATGTTCATAAACAGCACATTCTCTACACTCATGCATC-ACTGAAAGTA  499
      |||||||||||||  |||||||||||||||||||||||| || |||||||
seq2  AGATGTTCATAAAGGGCACATTCTCTACACTCATGCATCAACGGAAAGTA  499

seq1  GACCA-GCCAT-GTTTGGGGGGTTTTCTTTCTTCTTTCTTTTTTAAATAT  547
      |||||   ||| || |||||||   ||||||||||| | ||    |||||
seq2  GACCACTTCATGGTCTGGGGGGGGCTCTTTCTTCTTGC-TTCCGGAATAT  548

seq1  GGTTCCTCAAGATAGTATGAACAAGCATGT-CTCATCTCATTTCTCCCTG  596
      ||||||||  |||||||||||||||||||| |||||||||||||||||||
seq2  GGTTCCTC-GGATAGTATGAACAAGCATGTGCTCATCTCATTTCTCCCTG  597

seq1  TCTCACATTTCAACCTAATATTTCCTACTAATTGCCTCATTTAACACTAC  646
      ||||||||||||| ||||||| |||||||||||||||||||| |||||||
seq2  TCTCACATTTCAAACTAATATCTCCTACTAATTGCCTCATTTTACACTAC  647

seq1  AGAATGGTTGTTTGAAAGATACTTCTTTTCTCAATCTGCCTTTTGTCTCT  696
      | |||||||||||||||||||| |||||||||||||||||| || |||||
seq2  ACAATGGTTGTTTGAAAGATACGTCTTTTCTCAATCTGCCTGTTATCTCT  697

seq1  CAGTCCATCTGTCTTTTTTCTCTTTCTTTCCTTCTTTCTTTCCCTCTTCT  746
       |||| ||||| ||| |||||||||||  ||||||||||||| |||||||
seq2  GAGTCGATCTGACTTCTTTCTCTTTCTCGCCTTCTTTCTTTCACTCTTCT  747

seq1  GTGGAACTGCAAGTTGAACCAGACCATTGCACATGTCAGAGAAACACGTC  796
      ||| |||||||||||||||||||||| |||||| |||||||| |||||||
seq2  GTGAAACTGCAAGTTGAACCAGACCAGTGCACACGTCAGAGACACACGTC  797

seq1  TACTATTTTTTAAAACTTTTTACTGATTCTTTGTGAGTTTTAAATCATGC  846
      ||| |||||||| |||| ||||||||||||||||||||||||||||||||
seq2  TACGATTTTTTAGAACTGTTTACTGATTCTTTGTGAGTTTTAAATCATGC  847

seq1  ACCCAAGTCCTGCTCATCTCTCTGTCCCCTCATATCCAACCTTTACCCTT  896
      | |||||||| |||||||||||||| || |||||||||| || |||||||
seq2  A-CCAAGTCCAGCTCATCTCTCTGTGCCGTCATATCCAAGCTGTACCCTT  896

seq1  GCAATATGCCATCCAACAT  915
         | ||||||||| ||||
seq2  CGCAGATGCCATCCTACAT  915