BAC Information

Click to search

BAC

Clone NameB6Ng01-163C13
ChromosomeX (Build37)
Map Location 144,145,563 - 144,302,376
singlet/doubletdoublet
Overlap geneLOC100039462, LOC666789, LOC434863, EG623995
Upstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2
Downstream geneEG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096, LOC100039545, LOC666837, LOC100039553, LOC100034729, LOC666861, EG666864, LOC434866, EG666868, EG624260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163C13.bB6Ng01-163C13.g
ACCDH955815DH955816
length1,1411,039
definitionDH955815|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C13, 5' end.DH955816|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,301,310 - 144,302,376)(144,145,563 - 144,146,597)
sequence
gaattcaccaacttgcttctaatatgcaatgttgcctgttatacctggct
gtagtgaagtttcctgtctcagtgggattccctaactctcacatggtaaa
cctacctattagctaggccattgtacattcccttgtttgggtaagactgg
ctactgtcctaagaaatcaccctgcagactagccctgaggtattctagct
ctgttttttgtaatgcctaattagtttcaccatctctacttgaagtaaat
ttgaatgttaatgaatagataatattctcactgaattcctactgaattcc
aagtttgtctgcttcaaggattttctgggatgttggaacactggcgaagg
cttagctatgtcagaactcaatccttaaaggcatttatgataaaataata
ctaaaagagagcacgtggatccatacaccagactaactccgggatagggt
atgagtatatgggctatgagaatgccaaggttccaggaggttgagtttgc
ttgaaactctttgcctcatgagtgcttccagtcatctcagcctgccaaac
agacttcactggagtgtgcatagcagtccccagagtatcatttcagtggt
cccctgttgccagagacacatccttcctctataggaaccatgccttcttc
taagttggccacaataaaatgcttcctcctaaccctcccctgccacccca
cggcccaggaatttcatttttcaaatctgcaagacaagatctagaaatca
actgtctttggaggatactgagttttcttacctgtctaaagctgagttca
ccaagaactgagaaaggctgcactcccaaagatacgacaaacatttcctc
tattacttaacctgtctgaataatcaacctctttccactcttgttccttg
gttgtagttatcctttccctacttaccaagactgaatccactgtctacag
ctattagaaactgtttaagcaacaaaatatactgagcattctagtatgta
agaatcataccttctctgtcttgtagtgtggaaggcatattgacagttaa
atacccatattatatttgtagaaatcaaactgtgtttgaatatatctcca
agcatttatttaattgtaggttttggtggaagtttaaaagc
gaattcttttatgttgtaatgtatgagtttctgattttcatttcttttta
taggctccactcctatgggttttttgttgttgttgtatatttcaattctg
atgtattattttaatttaatggagttttttgtttattttggcttttgggt
tttgtttgttttcggttttgatttggctctccaatttcaatcagctttat
cttttcatctgaaggagttaacaaacataaaggtagagtgtggtagaatt
tactctttctgccttacttctttgaagctaggatatcaattcttttttaa
aaatatattttatttgtattttctctgtatgtatttttgcctacctgtgt
gtctgtgcacgacattaatgcactatgtatggaggccagaaaatggcaga
aaatccatcgaaatgtcaataacacggattagagagctgtgttgccaaat
aaggttttttttttccctcaaaactaagttcttctttgaaagcaagaaca
attcatcaggtgagccattaatctattccctttctaccttttccttttaa
tttttaaaatttacattccttccattggacaacttcccagttccccttcc
cacaattcctcattccattcctactccccccttgcctctgttagagtgct
aactaacctccacgtttgcccctacataaggagtctcccttctctggagc
ctccagtatctcaaggattaggcacatcttctcccactgcagccagaagt
ggcagaactcttctatataagtaaatgtggccctttgactatatatgctg
cctggttggtatctcagtctctgtgatttcccagaggactgagtttgttg
agactgatggtcatcctatgggtatgccctcctctttagctaattgaatc
cttctcctgagtcaaccataggggttcctgacttcagtctaatggctggg
ttgtaagtatctgtaatgtatcttcaggcagttgctggtagggtctctta
gaggacatcatgataaggctgctggttataagcacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_144301310_144302376
seq2: B6Ng01-163C13.b_116_1181 (reverse)

seq1  GCTTTT-AACTTCACCCAAAACATACAATT-AATAAATGCTTGAAGATAT  48
      |||||| ||||||  ||||||| ||||||| |||||||||||| ||||||
seq2  GCTTTTAAACTTCCACCAAAACCTACAATTAAATAAATGCTTGGAGATAT  50

seq1  ATTCAAACACAGTTTGTATTTCTACAAATAT-ATATGGGTATTTTACTGT  97
      |||||||||||||||| |||||||||||||| |||||||||||| |||||
seq2  ATTCAAACACAGTTTG-ATTTCTACAAATATAATATGGGTATTTAACTGT  99

seq1  CCATATTGCCTTTCCACAACTACAAGTACAGAGAAGGTATGATTCTTACA  147
      | ||| |||| |||||| |||||||| |||||||||||||||||||||| 
seq2  CAATA-TGCC-TTCCAC-ACTACAAG-ACAGAGAAGGTATGATTCTTAC-  144

seq1  ATACTAGAATGCTCAGTATATTTTGTTGCTTAAACAGTTTCT-ATAGCTG  196
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATACTAGAATGCTCAGTATATTTTGTTGCTTAAACAGTTTCTAATAGCTG  194

seq1  TAGACAGTGGATTCAGTCTTGGTAAGTAGGGAAAGGATAACTACAACCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTGGATTCAGTCTTGGTAAGTAGGGAAAGGATAACTACAACCAA  244

seq1  GGAACAAGAGTGGAAAGAGGTTGATTATTCAGACAGG-TAAGTAATAGAG  295
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGAACAAGAGTGGAAAGAGGTTGATTATTCAGACAGGTTAAGTAATAGAG  294

seq1  GAAATGTTTGTCGTATCTTTGGGAGTGCAGCCTTTCTCAGTTCTTGGTGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTTGTCGTATCTTTGGGAGTGCAGCCTTTCTCAGTTCTTGGTGA  344

seq1  ACTCAGCTTTAGACAGGTAAGAAAACTCAGTATCCTCCAAAGACAGTTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTTTAGACAGGTAAGAAAACTCAGTATCCTCCAAAGACAGTTGA  394

seq1  TTTCTAGATCTTGTCTTGCAGATTTGAAAAATGAAATTCCTGGGCCGTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGATCTTGTCTTGCAGATTTGAAAAATGAAATTCCTGGGCCGTGG  444

seq1  GGTGGCAGGGGAGGGTTAGGAGGAAGCATTTTATTGTGGCCAACTTAGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGGGGAGGGTTAGGAGGAAGCATTTTATTGTGGCCAACTTAGAA  494

seq1  GAAGGCATGGTTCCTATAGAGGAAGGATGTGTCTCTGGCAACAGGGGACC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATGGTTCCTATAGAGGAAGGATGTGTCTCTGGCAACAGGGGACC  544

seq1  ACTGAAATGATACTCTGGGGACTGCTATGCACACTCCAGTGAAGTCTGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGATACTCTGGGGACTGCTATGCACACTCCAGTGAAGTCTGTT  594

seq1  TGGCAGGCTGAGATGACTGGAAGCACTCATGAGGCAAAGAGTTTCAAGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGCTGAGATGACTGGAAGCACTCATGAGGCAAAGAGTTTCAAGCA  644

seq1  AACTCAACCTCCTGGAACCTTGGCATTCTCATAGCCCATATACTCATACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAACCTCCTGGAACCTTGGCATTCTCATAGCCCATATACTCATACC  694

seq1  CTATCCCGGAGTTAGTCTGGTGTATGGATCCACGTGCTCTCTTTTAGTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCGGAGTTAGTCTGGTGTATGGATCCACGTGCTCTCTTTTAGTAT  744

seq1  TATTTTATCATAAATGCCTTTAAGGATTGAGTTCTGACATAGCTAAGCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATCATAAATGCCTTTAAGGATTGAGTTCTGACATAGCTAAGCCT  794

seq1  TCGCCAGTGTTCCAACATCCCAGAAAATCCTTGAAGCAGACAAACTTGGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCAGTGTTCCAACATCCCAGAAAATCCTTGAAGCAGACAAACTTGGA  844

seq1  ATTCAGTAGGAATTCAGTGAGAATATTATCTATTCATTAACATTCAAATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAGGAATTCAGTGAGAATATTATCTATTCATTAACATTCAAATT  894

seq1  TACTTCAAGTAGAGATGGTGAAACTAATTAGGCATTACAAAAAACAGAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAGTAGAGATGGTGAAACTAATTAGGCATTACAAAAAACAGAGC  944

seq1  TAGAATACCTCAGGGCTAGTCTGCAGGGTGATTTCTTAGGACAGTAGCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACCTCAGGGCTAGTCTGCAGGGTGATTTCTTAGGACAGTAGCCA  994

seq1  GTCTTACCCAAACAAGGGAATGTACAATGGCCTAGCTAATAGGTAGGTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACCCAAACAAGGGAATGTACAATGGCCTAGCTAATAGGTAGGTTT  1044

seq1  ACCATGTGAGAGTTAGGGAATC  1067
      ||||||||||||||||||||||
seq2  ACCATGTGAGAGTTAGGGAATC  1066

seq1: chrX_144145563_144146597
seq2: B6Ng01-163C13.g_69_1107

seq1  GAATTCTTTTATGTTGTAATGTATGAGTTTCTGATTTTCATTTCTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATGTTGTAATGTATGAGTTTCTGATTTTCATTTCTTTTTA  50

seq1  TAGGCTCCACTCCTATGGGTTTTTTGTTGTTGTTGTATATTTCAATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCCACTCCTATGGGTTTTTTGTTGTTGTTGTATATTTCAATTCTG  100

seq1  ATGTATTATTTTAATTTAATGGAGTTTTTTGTTTATTTTGGCTTTTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTATTTTAATTTAATGGAGTTTTTTGTTTATTTTGGCTTTTGGGT  150

seq1  TTTGTTTGTTTTCGGTTTTGATTTGGCTCTCCAATTTCAATCAGCTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTCGGTTTTGATTTGGCTCTCCAATTTCAATCAGCTTTAT  200

seq1  CTTTTCATCTGAAGGAGTTAACAAACATAAAGGTAGAGTGTGGTAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATCTGAAGGAGTTAACAAACATAAAGGTAGAGTGTGGTAGAATT  250

seq1  TACTCTTTCTGCCTTACTTCTTTGAAGCTAGGATATCAATTCTTTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTCTGCCTTACTTCTTTGAAGCTAGGATATCAATTCTTTTTTAA  300

seq1  AAATATATTTTATTTGTATTTTCTCTGTATGTATTTTTGCCTACCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTTATTTGTATTTTCTCTGTATGTATTTTTGCCTACCTGTGT  350

seq1  GTCTGTGCACGACATTAATGCACTATGTATGGAGGCCAGAAAATGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCACGACATTAATGCACTATGTATGGAGGCCAGAAAATGGCAGA  400

seq1  AAATCCATCGAAATGTCAATAACACGGATTAGAGAGCTGTGTTGCCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATCGAAATGTCAATAACACGGATTAGAGAGCTGTGTTGCCAAAT  450

seq1  AAGGTTTTTTTTTTCCCTCAAAACTAAGTTCTTCTTTGAAAGCAAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTTTTTTTCCCTCAAAACTAAGTTCTTCTTTGAAAGCAAGAACA  500

seq1  ATTCATCAGGTGAGCCATTAATCTATTCCCTTTCTACCTTTTCCTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGGTGAGCCATTAATCTATTCCCTTTCTACCTTTTCCTTTTAA  550

seq1  TTTTTAAAATTTACATTCCTTCCATTGGACAACTTCCCAGTTCCCCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATTTACATTCCTTCCATTGGACAACTTCCCAGTTCCCCTTCC  600

seq1  CACAATTCCTCATTCCATTCCTACTCCCCCCTTGCCTCTGTTAGAGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTCCTCATTCCATTCCTACTCCCCCCTTGCCTCTGTTAGAGTGCT  650

seq1  AACTAACCTCCACGTTTGCCCCTACATAAGGAGTCTCCCTTCTCTGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCTCCACGTTTGCCCCTACATAAGGAGTCTCCCTTCTCTGGAGC  700

seq1  CTCCAGTATCTCAAGGATTAGGCACATCTTCTCCCACTGCAGCCAGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTATCTCAAGGATTAGGCACATCTTCTCCCACTGCAGCCAGAAGT  750

seq1  GGCAGAACTCTTCTATATAAGTAAATGTGGCCC-TTGACTATATATGCTG  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCAGAACTCTTCTATATAAGTAAATGTGGCCCTTTGACTATATATGCTG  800

seq1  CCTGGTTGGTATCTCAGTCTCTGTGATTTCCCAGAGGACTGAGTTTGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGGTATCTCAGTCTCTGTGATTTCCCAGAGGACTGAGTTTGTTG  850

seq1  AGACTGATGGTCATCCTATGGGTATGCCCTCCTCTTTAGCTTATTGAATC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACTGATGGTCATCCTATGGGTATGCCCTCCTCTTTAGCTAATTGAATC  900

seq1  CTTCTCCTGAGTCAACCATAGGGGTTCCTGACTTCAGTCTAATGGCTGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTGAGTCAACCATAGGGGTTCCTGACTTCAGTCTAATGGCTGGG  950

seq1  -TGTAAGTATCTGT-ATGTATC-TCAGGCAGTTGCTGGTAGGGTCTCTTA  996
       ||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TTGTAAGTATCTGTAATGTATCTTCAGGCAGTTGCTGGTAGGGTCTCTTA  1000

seq1  GAGGACATCAATGAT-AGGCTGCTGTTTATAAGCACATCA  1035
      ||||||||| ||||| ||||||||| ||||||||||||||
seq2  GAGGACATC-ATGATAAGGCTGCTGGTTATAAGCACATCA  1039