BAC Information

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BAC

Clone NameB6Ng01-163K13
ChromosomeX (Build37)4 (Build37)
Map Location 10,254,901 - 10,256,07057,942,938 - 57,943,093
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7, EG546265
Downstream geneLOC633354, LOC633361, LOC100042912, Mid1ip1, LOC668982, Ppia-psx_105.1, LOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik, LOC669520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163K13.bB6Ng01-163K13.g
ACCDH956190DH956191
length1,16970
definitionDH956190|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K13, 5' end.DH956191|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,254,901 - 10,256,070)(57,942,938 - 57,943,093)
sequence
gaattcaatccttggaacctacgtagtagaaggagagaattggctcccac
acatgacattgtacacgcctcatacaaatacacactaagtaagggtaaga
aaatgtttttcaaaataaagtttctgcttctcatgatttctttccagacc
tttggggaaaatttctgaggtcacgtcaacattgaagggattctgacaac
ttctaattgatatgaatgattttggctgggctagcaaatcattaatcatg
gtgggtcatacatacatcaggctcatgtacaggggatgaaatctagtctt
tcaaattaaatgaaaaaaaaacatgaaaaaatctaagacttaacagtgga
agaacagtccaggaatttgtaatcttttcagacttgattcaaaatgatga
gaccataatacagaggccaggctagtccaggtacagaattcccattctta
gccttgttcctatcacttgacaaatatttgttgaattcacaagtaggtat
taaggatactctataggaataaaggctgctggactttagggcaatttgaa
tgttgcagaggtaactgagaggggagcaaatgtctggcattgggaaccca
gacagctagtggtcctgctaactacacgacccatagcactttaaggaagg
actattgtctcttttgagggtgatctatcaaccttcaaaaaaccacgtat
tagaattgttaaatgtgttatgagtgaggaatgtagatgaagatttggga
atcttctaagcaatggctaaaaaaataaaataaaataaagcaaacagttc
cacccatggcagaaacgacagcatggacaatttctaaccgtccctgagca
gctctgctaatgaacagtattgcatgaacatttttgttgaccttattcga
gctgttctcccattagaggcagaagatactctatagagatcagttgtaaa
gatgcctccattctaagacccattttgaatacaagaatcaccagaggctc
aaagccatctgttatggttgtgatcaaaggaaatatggtccatgctaatc
tattcctcgtgtggaggttacatcttctagaacatcgattagctggcctt
taagggggtcaaaacagaagcttcttggtgaataagctcgctgtgggctg
agatatagggagagcctct
ttcggaaagatggatggttggctgtttagttggttggttggttggttggt
ttgttggttggttggttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_10254901_10256070
seq2: B6Ng01-163K13.b_45_1213 (reverse)

seq1  AGAGGCTCTCCATAAAACTCAGCCCACAGCAGCTCTGATTCA-CAAGAAG  49
      ||||||||||| || | ||||||||||||| |  || ||||| |||||||
seq2  AGAGGCTCTCCCTATATCTCAGCCCACAGC-GAGCTTATTCACCAAGAAG  49

seq1  CTTCTGCTCTGACCACCTTAAAGGCAGACATATCGATGTTTCTAGAAAAT  99
      |||||| | ||||| ||||||||||   |  ||||||| |||||||| ||
seq2  CTTCTGTTTTGACCCCCTTAAAGGCCAGCTAATCGATG-TTCTAGAAGAT  98

seq1  GTAAACTTCAAACATAGAATAGATTATGCATTGACCATATTTCATCTGAT  149
      |||| || || ||   |||||||||| |||| ||||||||||| | ||||
seq2  GTAACCTCCACACGAGGAATAGATTA-GCATGGACCATATTTCCTTTGAT  147

seq1  CACAAACATAACAGATGGCTTTGAAGCCTCT-GTGATTCTGGTATTC-AA  197
      ||||| ||||||||||||||||| ||||||| |||||||| |||||| ||
seq2  CACAACCATAACAGATGGCTTTG-AGCCTCTGGTGATTCTTGTATTCAAA  196

seq1  ATGGGTCTTAGAATGGAGGCATCTTTACAACTGATCTCTATAGAGTATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTTAGAATGGAGGCATCTTTACAACTGATCTCTATAGAGTATCT  246

seq1  TCTGCCTCTAATGGGAGAACAGCTCGAATAAGGTCAACAAAAATGTTCCT  297
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGCCTCTAATGGGAGAACAGCTCGAATAAGGTCAACAAAAATGTTCAT  296

seq1  GCAATACTGTTCATTAGCAGAGCTGCTCAGGGACGGTTAGAAATTGTCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACTGTTCATTAGCAGAGCTGCTCAGGGACGGTTAGAAATTGTCCA  346

seq1  TGCTGTCGTTTCTGCCATGGGTGGAACTGTTTGCTTTATTTTATTTTATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCGTTTCTGCCATGGGTGGAACTGTTTGCTTTATTTTATTTTATT  396

seq1  TTTTTAGCCATTGCTTAGAAGATTCCCAAATCTTCATCTACATTCCTCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGCCATTGCTTAGAAGATTCCCAAATCTTCATCTACATTCCTCAC  446

seq1  TCATAACACATTTAACAATTCTAATACGTGGTTTTTTGAAGGTTGATAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACACATTTAACAATTCTAATACGTGGTTTTTTGAAGGTTGATAGA  496

seq1  TCACCCTCAAAAGAGACAATAGTCCTTCCTTAAAGTGCTATGGGTCGTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCAAAAGAGACAATAGTCCTTCCTTAAAGTGCTATGGGTCGTGT  546

seq1  AGTTAGCAGGACCACTAGCTGTCTGGGTTCCCAATGCCAGACATTTGCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCAGGACCACTAGCTGTCTGGGTTCCCAATGCCAGACATTTGCTC  596

seq1  CCCTCTCAGTTACCTCTGCAACATTCAAATTGCCCTAAAGTCCAGCAGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAGTTACCTCTGCAACATTCAAATTGCCCTAAAGTCCAGCAGCC  646

seq1  TTTATTCCTATAGAGTATCCTTAATACCTACTTGTGAATTCAACAAATAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTATAGAGTATCCTTAATACCTACTTGTGAATTCAACAAATAT  696

seq1  TTGTCAAGTGATAGGAACAAGGCTAAGAATGGGAATTCTGTACCTGGACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGTGATAGGAACAAGGCTAAGAATGGGAATTCTGTACCTGGACT  746

seq1  AGCCTGGCCTCTGTATTATGGTCTCATCATTTTGAATCAAGTCTGAAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCCTCTGTATTATGGTCTCATCATTTTGAATCAAGTCTGAAAAG  796

seq1  ATTACAAATTCCTGGACTGTTCTTCCACTGTTAAGTCTTAGATTTTTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAATTCCTGGACTGTTCTTCCACTGTTAAGTCTTAGATTTTTTCA  846

seq1  TGTTTTTTTTTCATTTAATTTGAAAGACTAGATTTCATCCCCTGTACATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTCATTTAATTTGAAAGACTAGATTTCATCCCCTGTACATG  896

seq1  AGCCTGATGTATGTATGACCCACCATGATTAATGATTTGCTAGCCCAGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATGTATGTATGACCCACCATGATTAATGATTTGCTAGCCCAGCC  946

seq1  AAAATCATTCATATCAATTAGAAGTTGTCAGAATCCCTTCAATGTTGACG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTCATATCAATTAGAAGTTGTCAGAATCCCTTCAATGTTGACG  996

seq1  TGACCTCAGAAATTTTCCCCAAAGGTCTGGAAAGAAATCATGAGAAGCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCAGAAATTTTCCCCAAAGGTCTGGAAAGAAATCATGAGAAGCAG  1046

seq1  AAACTTTATTTTGAAAAACATTTTCTTACCCTTACTTAGTGTGTATTTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTATTTTGAAAAACATTTTCTTACCCTTACTTAGTGTGTATTTGT  1096

seq1  ATGAGGCGTGTACAATGTCATGTGTGGGAGCCAATTCTCTCCTTCTACTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCGTGTACAATGTCATGTGTGGGAGCCAATTCTCTCCTTCTACTA  1146

seq1  CGTAGGTTCCAAGGATTGAATTC  1170
      |||||||||||||||||||||||
seq2  CGTAGGTTCCAAGGATTGAATTC  1169

seq1: chr4_57942938_57943093
seq2: B6Ng01-163K13.g_85_144 (reverse)

seq1  ACCAACCAACCAACCAACATACAAGGAAGCCCTCGAGAAGATGTCCTATG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAACACTCAGAGCTGTGAGGAAAGTGAGGGACAATTTTCTACTGTTTACT  100
                                                     || 
seq2  -----------------------------------------------ACC  3

seq1  TAATAACCAA--AACAGAGCCAACCAACCAACCAACCTACCTACCAACCA  148
       |  ||||||  |||| | |||||||||||||||||| ||  | || |||
seq2  AACCAACCAACCAACA-AACCAACCAACCAACCAACCAACTAAACAGCCA  52

seq1  ACCATCCA  156
      ||||||||
seq2  ACCATCCA  60