BAC Information

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BAC

Clone NameB6Ng01-163M16
ChromosomeX (Build37)4 (Build37)
Map Location 70,778,188 - 70,778,283117,505,952 - 117,506,933
singlet/doubletsingletsinglet
Overlap geneAtp2b3
Upstream geneGabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn
Downstream geneLOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163M16.bB6Ng01-163M16.g
ACCDH956288DH956289
length312976
definitionDH956288|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M16, 5' end.DH956289|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,778,188 - 70,778,283)(117,505,952 - 117,506,933)
sequence
acagagacatctgcccagtgtaataagtgtatgtgtgctcatctgtgtgt
gtgtctgggtgtgtgcttatatgtgtgtgtgcatgttcatctgtgtgtgg
atgtgttggtgtatatgtactcacctgggtgcatatgtgtgtgttcatgt
gtatgtgtttatatgtatgtgtcaatgtgcatgtgagttcatttggattt
agatgtgtgtgtctgtgtgttcatgtgtgtgtttgcccatgtccatatat
atgtgtgtgttcatctgggtgcagatgtgtgtgttcatgtgtgtgtgtgt
gtgtgtgtgtgt
gaattcagggagcggagaagggctgtgtgtgagggggtaccagcaggagg
ggctgaaatctggatgtaaagagaataaagaaagaaaacttcaaaattca
aaataaagttttaaacattttcttagaaccatcctaatgccttttaggtc
catcgcatccctataagttagatggaagcccctccctcagccccaacctt
ccctttacctggcagcttctcccaagagcctcctgtccatctgtcttggg
aaggagccattttggataatctaaagaggaggcaggctatgagagaccat
aaacaacttgtagaggaacccaagtcctggtagggaagatgagaagtgtt
tagatactatctggtcagatccaggacttgagcacacacacaactacaca
gcctgctgcaggacccacagttagactcccagaaacttctacataagcaa
agttaaaggccacaggtggtggtggtgcacgcctttaatcccagcccttg
gaggcagaggcaggcggatttctgagtgcaaggccagcctggtctacaaa
gttagttccgggacagccaccgggactatacagagaaaccctgtctcaaa
tccccccccccaaaaaaaaagcccacaggcacaacagattgcttaggtag
atctgcgtgtgtgtcccctctctactctatacaaaactctggtaattagt
tcgtgggagactataaaccccaagcaggcttataactgctgtgttcacgg
gcaaactcaaaagggacataagtgccttcctagatctgaccaaatctcga
gatgacagattgtgagttccatgacagcagaaagcagtatataagaaggt
agttcttgggaaagggctgtggttgagccgtggggtagagagaggcccac
tgaaggagtgtgctggctgcttgctttttcagtgattataaataataagt
ggcttctcacaacagttgatctgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_70778188_70778283
seq2: B6Ng01-163M16.b_186_362 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACA----CACACAT  46
        |||||||||||||||||||||||||   |||||||||    ||| || 
seq2  --ACACACACACACACACACACACACATGAACACACACATCTGCACCCAG  48

seq1  ATATATATATATATATATATATATAT----ATATATATGACATGAACACA  92
      ||  | | | | ||||||||  | ||    | | | |  |||||||||||
seq2  ATGAACACACACATATATATGGACATGGGCAAACACA-CACATGAACACA  97

seq1  CACA----------------------------------------------  96
      || |                                              
seq2  CAGACACACACATCTAAATCCAAATGAACTCACATGCACATTGACACATA  147

seq1  ------------------------------  96
                                    
seq2  CATATAAACACATACACATGAACACACACA  177

seq1: chr4_117505952_117506933
seq2: B6Ng01-163M16.g_71_1046

seq1  GAATTCAGGGAGCGGAGAAGGGCTGTGTGTGAGGGGGTACCAGCAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGCGGAGAAGGGCTGTGTGTGAGGGGGTACCAGCAGGAGG  50

seq1  GGCTGAAATCTGGATGTAAAGAGAATAAAGAAAGAAAACTTCAAAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAATCTGGATGTAAAGAGAATAAAGAAAGAAAACTTCAAAATTCA  100

seq1  AAATAAAGTTTTAAACATTTTCTTAGAACCATCCTAATGCCTTTTAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGTTTTAAACATTTTCTTAGAACCATCCTAATGCCTTTTAGGTC  150

seq1  CATCGCATCCCTATAAGTTAGATGGAAGCCCCTCCCTCAGCCCCAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCATCCCTATAAGTTAGATGGAAGCCCCTCCCTCAGCCCCAACCTT  200

seq1  CCCTTTACCTGGCAGCTTCTCCCAAGAGCCTCCTGTCCATCTGTCTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACCTGGCAGCTTCTCCCAAGAGCCTCCTGTCCATCTGTCTTGGG  250

seq1  AAGGAGCCATTTTGGATAATCTAAAGAGGAGGCAGGCTATGAGAGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCATTTTGGATAATCTAAAGAGGAGGCAGGCTATGAGAGACCAT  300

seq1  AAACAACTTGTAGAGGAACCCAAGTCCTGGTAGGGAAGATGAGAAGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTTGTAGAGGAACCCAAGTCCTGGTAGGGAAGATGAGAAGTGTT  350

seq1  TAGATACTATCTGGTCAGATCCAGGACTTGAGCACACACACAACTACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTATCTGGTCAGATCCAGGACTTGAGCACACACACAACTACACA  400

seq1  GCCTGCTGCAGGACCCACAGTTAGACTCCCAGAAACTTCTACATAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGCAGGACCCACAGTTAGACTCCCAGAAACTTCTACATAAGCAA  450

seq1  AGTTAAAGGCCACAGGTGGTGGTGGTGCACGCCTTTAATCCCAGCCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGGCCACAGGTGGTGGTGGTGCACGCCTTTAATCCCAGCCCTTG  500

seq1  GAGGCAGAGGCAGGCGGATTTCTGAGTGCAAGGCCAGCCTGGTCTACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGCGGATTTCTGAGTGCAAGGCCAGCCTGGTCTACAAA  550

seq1  GTTAGTTCCGGGACAGCCACCGGGACTATACAGAGAAACCCTGTCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTCCGGGACAGCCACCGGGACTATACAGAGAAACCCTGTCTCAAA  600

seq1  TCCCCCCCCCCAAAAAAAAAGCCCACAGGCACAACAGATTGCTTAGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCCCAAAAAAAAAGCCCACAGGCACAACAGATTGCTTAGGTAG  650

seq1  ATCTGCGTGTGTGTCCCCTCTCTACTCTATACAAAACTCTGGTAATTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCGTGTGTGTCCCCTCTCTACTCTATACAAAACTCTGGTAATTAGT  700

seq1  TCGTGGGAGACTATAAACCCCAAGCAGGCTTATAACTGCTGTGTTCACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGGAGACTATAAACCCCAAGCAGGCTTATAACTGCTGTGTTCACGG  750

seq1  GCAAACTCAAAAGGGACATAAGTGCCTTCCTAGATCTGACCAAATCTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCAAAAGGGACATAAGTGCCTTCCTAGATCTGACCAAATCTCGA  800

seq1  GAATGAACAGATTGTGAGTTCCATGACAGCAGAAAGCAGTATATAAGAAG  850
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  G-ATG-ACAGATTGTGAGTTCCATGACAGCAGAAAGCAGTATATAAGAAG  848

seq1  GTAGTTC-TGGGAAAGGGCTGTGGTTGAGCCGTGGGGTAGAGAGAGGCCC  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCTTGGGAAAGGGCTGTGGTTGAGCCGTGGGGTAGAGAGAGGCCC  898

seq1  AACTGAAGGGAGTGTGCTGGCTGCTGTCTTTTTCAGTGATTATAAATTAA  949
       |||||| |||||||||||||||||  ||||||||||||||||||| |||
seq2  -ACTGAA-GGAGTGTGCTGGCTGCTTGCTTTTTCAGTGATTATAAA-TAA  945

seq1  TAAGGTGGCTTCTCACACCAGTTGATCTTGTGC  982
      ||| ||||||||||||| ||||||||| |||||
seq2  TAA-GTGGCTTCTCACAACAGTTGATC-TGTGC  976