BAC Information

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BAC

Clone NameB6Ng01-163N19
ChromosomeX (Build37)
Map Location 82,180,236 - 82,297,225
singlet/doubletdoublet
Overlap geneDmd, LOC100042296
Upstream geneLOC100042306
Downstream geneLOC669833, 1600014K23Rik, Map3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163N19.bB6Ng01-163N19.g
ACCDH956342DH956343
length8001,139
definitionDH956342|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N19, 5' end.DH956343|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,180,236 - 82,181,029)(82,296,073 - 82,297,225)
sequence
gaattcagactattaatttttaaattgaaagggattgtaattacttaaga
taatttttaacttttgctgtgatagtctcagttgaatttacagaatgatg
ttttaacatatgtacatgagtgctctatgttgttagaattcaaaagagat
gacatgaaattattctttcgaatgaactttattaggatagaattacatga
cagccattatgggtttcaaaataggggacattagaagatatagagcatca
cactgtagacagccttccctttgaatactgaaaggagcttcattagaaga
gacagccataagaaagtgcataaccaagatcctgaaggtaggaacaagca
ctttagctccagagaacaaagagggttgttttttttatttgtttttgttt
gtttgtttgtttggggacttttttgtttttgtttttgtttttttgggtat
tttttgttttgtttgtttgtttgttttgttttttcaagacaggatttctc
tgtgtagccctggctgccctggaactcactctgtagaccaggctggcctc
aaactcagaaatccacctgcctctgcctcccaagtgctgggattaatggc
gtgcgccactcttacaggtttttcagggagctagataatcttcataccat
gagatctgacctagcctgttcctagcttggtgccccacaccaaaggacag
agagattaggcactaaataaaaaacgtaaactttatcctttaaaaattat
ttcagtgctgggcatggaagtgtatacccttatgccaacatttggaagat

gaattccacagaaagccaccaggaacttgatgccccatgtccaaaagaca
taacagaacacagagagaaagctcgtgtttatcaacatactgacatttct
tgccttttaatagcagttattgagcagattaaaaattatgacataggtat
tggaaatatattttaattcatcggtcctcaacaaatcggcatttccactg
tgagataacagaagaaactgctagcccccattgcacccttttccctgatt
tgtttgatatgggttattctcccaattatctaggattcgagggtatttga
ataaaatgggtaaaagaactactcaaataattccctgaatcaaccttctt
ttatcttcatcctcttacacacacacacacacacacacacacacacacac
acacacacacacacctttccctttccctttcaagcaatacaaagtagcca
gaaaagcagacttagatttcatcttagcagtcttagcttcacttccctgc
aaagcagcactaacagaaggaattggaaagaagagaagaataaagggtgt
gcctgattctcgaaatcagaaagatcatcttttcatcatttaacactaag
atgcttggcaacacagtcgaatgaacatcaaattggaggataaggaccaa
atagtccacttcactccatgtgggaattttgtacctggagtgaaatgaaa
gccccacagaagcacactaaacctcttctctcaaaaggcaggaagacagt
gagaagcacaaatgtacctagctcacagctatctatattctctcttgaag
ggcacactgattggaggggagagagacgtgatcagttggattttacaatc
gcatttgttactctgtgactgtctccaaaagaaaaaaaaaaactgaaaat
ttttacctacttgaatatgtacagctactacagaaaaacagggtgtgcac
tttacacatcaggaacacactttctacatagttctgggtacatctttgtt
cagccttcctgagaacatgatgttcattaagaccacagtctttacaacat
ttacacctgactccacagacatccctgaaatccttcatctttaacatggc
ttattgattcagccgcagatcccaagggctggcatcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_82180236_82181029
seq2: B6Ng01-163N19.b_46_844

seq1  GAATTCAGACTATTAATTTTTAAATTGAAAGGGATTGTAATTACTTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTATTAATTTTTAAATTGAAAGGGATTGTAATTACTTAAGA  50

seq1  TAATTTTTAACTTTTGCTGTGATAGTCTCAGTTGAATTTACAGAATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAACTTTTGCTGTGATAGTCTCAGTTGAATTTACAGAATGATG  100

seq1  TTTTAACATATGTACATGAGTGCTCTATGTTGTTAGAATTCAAAAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATATGTACATGAGTGCTCTATGTTGTTAGAATTCAAAAGAGAT  150

seq1  GACATGAAATTATTCTTTCGAATGAACTTTATTAGGATAGAATTACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAATTATTCTTTCGAATGAACTTTATTAGGATAGAATTACATGA  200

seq1  CAGCCATTATGGGTTTCAAAATAGGGGACATTAGAAGATATAGAGCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTATGGGTTTCAAAATAGGGGACATTAGAAGATATAGAGCATCA  250

seq1  CACTGTAGACAGCCTTCCCTTTGAATACTGAAAGGAGCTTCATTAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGACAGCCTTCCCTTTGAATACTGAAAGGAGCTTCATTAGAAGA  300

seq1  GACAGCCATAAGAAAGTGCATAACCAAGATCCTGAAGGTAGGAACAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCATAAGAAAGTGCATAACCAAGATCCTGAAGGTAGGAACAAGCA  350

seq1  CTTTAGCTCCAGAGAACAAAGAGGGTTGTTTTTTTTATTTGTTTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTCCAGAGAACAAAGAGGGTTGTTTTTTTTATTTGTTTTTGTTT  400

seq1  GTTTGTTTGTTTGGGGACTTTTTTGTTTTTGTTTTTGTTTTTTTGGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGGGGACTTTTTTGTTTTTGTTTTTGTTTTTTTGGGTAT  450

seq1  TTTTTGTTTTGTTTGTTTGTTTGTTTTGTTTTTTCAAGACAGGATTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTGTTTGTTTGTTTTGTTTTTTCAAGACAGGATTTCTC  500

seq1  TGTGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTC  550

seq1  AAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAATGGC  600

seq1  GTGCGCCACTCTTACAGG-TTTTCAGGGAGCTAGATAATCTTCATACCAT  649
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGCGCCACTCTTACAGGTTTTTCAGGGAGCTAGATAATCTTCATACCAT  650

seq1  GAGATCTGACCTAGCCTG-TCCTAGCTTGGTGCCCCACACCAAAGGACAG  698
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGATCTGACCTAGCCTGTTCCTAGCTTGGTGCCCCACACCAAAGGACAG  700

seq1  AGAGA-TAGGCACTAAAT-AAAAACGTAAAC-TTATCCTTTAAAAATTAT  745
      ||||| |||||||||||| |||||||||||| ||||||||||||||||||
seq2  AGAGATTAGGCACTAAATAAAAAACGTAAACTTTATCCTTTAAAAATTAT  750

seq1  TTCAGTGCTGGGCATGGTAGTGTATACCTTTATGTCAACACTTGGAAGA  794
      ||||||||||||||||| |||||||||| ||||| ||||| ||||||||
seq2  TTCAGTGCTGGGCATGGAAGTGTATACCCTTATGCCAACATTTGGAAGA  799

seq1: chrX_82296073_82297225
seq2: B6Ng01-163N19.g_71_1209 (reverse)

seq1  GCTGATGCCAGCCTTTGGAATCTGCGGGGCCTGAATCAATA--GCATGTT  48
      ||||||||||||| |||| ||||||||   |||||||||||   ||||||
seq2  GCTGATGCCAGCCCTTGGGATCTGCGG---CTGAATCAATAAGCCATGTT  47

seq1  TAAAAGATTTGAAGGTTTTTCAGGAATGTCTGTGGAGTCA-GTGTTAATG  97
        |||||  ||||||  ||||||| ||||||||||||||| |||| ||||
seq2  --AAAGA--TGAAGG-ATTTCAGGGATGTCTGTGGAGTCAGGTGTAAATG  92

seq1  TATGTAAAGACTTGTGGTCTATATTGAACATCATTGTTCTCAGGAAGGCT  147
      | ||||||||| |||||||| || ||||||||| ||||||||||||||||
seq2  T-TGTAAAGAC-TGTGGTCT-TAATGAACATCA-TGTTCTCAGGAAGGCT  138

seq1  GAACAAAGATGTACCCAGAACTATGTAGAAAGTGTGTTTCCTGATGTGTA  197
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAACAAAGATGTACCCAGAACTATGTAGAAAGTGTG-TTCCTGATGTGTA  187

seq1  AAGTGCACACCCTGTTTTTCTGTAGTAGCTGTACATATTCAAGTAGGTGA  247
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGTGCACACCCTGTTTTTCTGTAGTAGCTGTACATATTCAAGTAGGTAA  237

seq1  AAATTTTCAGTTTTTTTTTTTTTCTTTTTGGAGACAGTCACAGAGTAACA  297
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  AAATTTTCAGTTTTTTTTTTT---CTTTTGGAGACAGTCACAGAGTAACA  284

seq1  AATGCGATTGTAAAATCCAAACTGATCACGTCTCTCTCCCCTCCAATCAG  347
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATGCGATTGTAAAATCC-AACTGATCACGTCTCTCTCCCCTCCAATCAG  333

seq1  TGTGCCCTTCAAGAGAGAATATAGATAGCTGTGAGCTAGGTACATTTGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTTCAAGAGAGAATATAGATAGCTGTGAGCTAGGTACATTTGTG  383

seq1  CTTCTCACTGTCTTCCTGCCTTTTGAGAGAAGAGGTTTAGTGTGCTTCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACTGTCTTCCTGCCTTTTGAGAGAAGAGGTTTAGTGTGCTTCTG  433

seq1  TGGGGCTTTCATTTCACTCCAGGTACAAAATTCCCACATGGAGTGAAGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTTTCATTTCACTCCAGGTACAAAATTCCCACATGGAGTGAAGTG  483

seq1  GACTATTTGGTCCTTATCCTCCAATTTGATGTTCATTCGACTGTGTTGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTGGTCCTTATCCTCCAATTTGATGTTCATTCGACTGTGTTGCC  533

seq1  AAGCATCTTAGTGTTAAATGATGAAAAGATGATCTTTCTGATTTCGAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTTAGTGTTAAATGATGAAAAGATGATCTTTCTGATTTCGAGAA  583

seq1  TCAGGCACACCCTTTATTCTTCTCTTCTTTCCAATTCCTTCTGTTAGTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCACACCCTTTATTCTTCTCTTCTTTCCAATTCCTTCTGTTAGTGC  633

seq1  TGCTTTGCAGGGAAGTGAAGCTAAGACTGCTAAGATGAAATCTAAGTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCAGGGAAGTGAAGCTAAGACTGCTAAGATGAAATCTAAGTCTG  683

seq1  CTTTTCTGGCTACTTTGTATTGCTTGAAAGGGAAAGGGAAAGGTGTGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGCTACTTTGTATTGCTTGAAAGGGAAAGGGAAAGGTGTGTGT  733

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGATGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGATGA  783

seq1  AGATAAAAGAAGGTTGATTCAGGGAATTATTTGAGTAGTTCTTTTACCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGAAGGTTGATTCAGGGAATTATTTGAGTAGTTCTTTTACCCA  833

seq1  TTTTATTCAAATACCCTCGAATCCTAGATAATTGGGAGAATAACCCATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCAAATACCCTCGAATCCTAGATAATTGGGAGAATAACCCATAT  883

seq1  CAAACAAATCAGGGAAAAGGGTGCAATGGGGGCTAGCAGTTTCTTCTGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATCAGGGAAAAGGGTGCAATGGGGGCTAGCAGTTTCTTCTGTT  933

seq1  ATCTCACAGTGGAAATGCCGATTTGTTGAGGACCGATGAATTAAAATATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACAGTGGAAATGCCGATTTGTTGAGGACCGATGAATTAAAATATA  983

seq1  TTTCCAATACCTATGTCATAATTTTTAATCTGCTCAATAACTGCTATTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATACCTATGTCATAATTTTTAATCTGCTCAATAACTGCTATTAA  1033

seq1  AAGGCAAGAAATGTCAGTATGTTGATAAACACGAGCTTTCTCTCTGTGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGAAATGTCAGTATGTTGATAAACACGAGCTTTCTCTCTGTGTT  1083

seq1  CTGTTATGTCTTTTGGACATGGGGCATCAAGTTCCTGGTGGCTTTCTGTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGTCTTTTGGACATGGGGCATCAAGTTCCTGGTGGCTTTCTGTG  1133

seq1  GAATTC  1153
      ||||||
seq2  GAATTC  1139