BAC Information

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BAC

Clone NameB6Ng01-163O17
Chromosome1 (Build37)X (Build37)
Map Location 189,700,014 - 189,701,038132,679,955 - 132,680,461
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163O17.bB6Ng01-163O17.g
ACCDH956384DH956385
length1,033610
definitionDH956384|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O17, 5' end.DH956385|Mus musculus domesticus DNA, BAC clone: B6Ng01-163O17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(189,700,014 - 189,701,038)(132,679,955 - 132,680,461)
sequence
gaattctctcacacaaatagacaataggtctcattgatggatacctgctc
tggggctcggtggctaagccttaccctctgcttgtttctgtgaatacagt
ttactggcacatagccgtgggtattcactttacatgttgtctttggcaaa
gctgattcactgagacagagaccgtgtggctcataaagcatgaaatatgg
gaggaccatcgatgggcaatgcttgccagcccttcagatagaaacacctg
ttaatggttgctttgtttctaggtcagaacctgaaacagtgtgataccta
ttattattaacctcaggacaatacactagtcacaaggtgctttactggcc
acaatatttatcagaaacagtgtgtgtgtgtgtgcaggttttactgggat
ttgctcttagagcctatgtgtactacacatcactctaccactgaaccata
tctccgatacttctcaaaaattttaaggacagagaaatatttccacagca
tctatagagtaagaggtcacctataaagtataaaaagaaatgacaactga
gaagcaaactgtaaggtatcattcaggaatgttaggtttataggtatctc
gctcctccgtgagcgtgcgcacgcacgcatgcacacacgcacgcacgcac
gtgcgtacacacacacatacacagacacacacagtactgagaactgaatc
tcgggtctcggtcgctgagctttacccatatccctggtttttttgttgtt
cccgtctggggctgtgtgcatgctaggtgagtgtcctaccacagagcaat
ctcagcagatttttatggagcttttgcacactagattctatcacacagtg
aaatgggtactgtgaaataaagccccagagcattcctgccctggaatgga
accatgtacgtaggtctctcttggcttattttcactgcagttagttttgc
ttttgggaaagagactccttcttcatctgctagagagcacagcagagtgt
gaccccgccactggttctgggggagttgggcta
gaattctaaaggcagtgtgtggaaatgctgggtgaaggtccagctgagag
ggtatgccaagattaactggcttctattaaagccaggccaagtacaaaaa
aaaaaaaatcacactttaaaatgtgttatatgcaccctgtgatcattttg
tattttcaccctttacttcaggatccccggagttaggcctgtacctgtgc
acactcagtggcttttcaaagcaggacacccatggaaggagttacagaga
caaagtctggagctgagacaaaaggatggaccatctagagactgccatat
ccagagatccatcccataattagcctccaaacgctgacaccattgcacac
actagcaagattttgctgaaaggacactgatatagctgtctcttgtgaga
ttacgctggggcctagcaaacacagaagtggatgatcacagtaagctatt
ggatggatcacagggcccccaatggaggagctagagaaattacccaagga
gctaaagggaactgcaaccctataggtggaacaacaatatgaactaacca
gtaccccggagctcttgactctagctgcatatgtatcaaaagatggccta
gtcggccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189700014_189701038
seq2: B6Ng01-163O17.b_48_1080

seq1  GAATTCTCTCACACAAATAGACAATAGGTCTCATTGATGGATACCTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACACAAATAGACAATAGGTCTCATTGATGGATACCTGCTC  50

seq1  TGGGGCTCGGTGGCTAAGCCTTACCCTCTGCTTGTTTCTGTGAATACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCGGTGGCTAAGCCTTACCCTCTGCTTGTTTCTGTGAATACAGT  100

seq1  TTACTGGCACATAGCCGTGGGTATTCACTTTACATGTTGTCTTTGGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGCACATAGCCGTGGGTATTCACTTTACATGTTGTCTTTGGCAAA  150

seq1  GCTGATTCACTGAGACAGAGACCGTGTGGCTCATAAAGCATGAAATATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTCACTGAGACAGAGACCGTGTGGCTCATAAAGCATGAAATATGG  200

seq1  GAGGACCATCGATGGGCAATGCTTGCCAGCCCTTCAGATAGAAACACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCATCGATGGGCAATGCTTGCCAGCCCTTCAGATAGAAACACCTG  250

seq1  TTAATGGTTGCTTTGTTTCTAGGTCAGAACCTGAAACAGTGTGATACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTTGCTTTGTTTCTAGGTCAGAACCTGAAACAGTGTGATACCTA  300

seq1  TTATTATTAACCTCAGGACAATACACTAGTCACAAGGTGCTTTACTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAACCTCAGGACAATACACTAGTCACAAGGTGCTTTACTGGCC  350

seq1  ACAATATTTATCAGAAACAGTGTGTGTGTGTGTGCAGGTTTTACTGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTATCAGAAACAGTGTGTGTGTGTGTGCAGGTTTTACTGGGAT  400

seq1  TTGCTCTTAGAGCCTATGTGTACTACACATCACTCTACCACTGAACCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTAGAGCCTATGTGTACTACACATCACTCTACCACTGAACCATA  450

seq1  TCTCCGATACTTCTCAAAAATTTTAAGGACAGAGAAATATTTCCACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGATACTTCTCAAAAATTTTAAGGACAGAGAAATATTTCCACAGCA  500

seq1  TCTATAGAGTAAGAGGTCACCTATAAAGTATAAAAAGAAATGACAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGAGTAAGAGGTCACCTATAAAGTATAAAAAGAAATGACAACTGA  550

seq1  GAAGCAAACTGTAAGGTATCATTCAGGAATGTTAGGTTTATAGGTATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACTGTAAGGTATCATTCAGGAATGTTAGGTTTATAGGTATCTC  600

seq1  GCTCCTCCGTGAGCGTGCGCACGCACGCATGCACACACGCACGCACGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCGTGAGCGTGCGCACGCACGCATGCACACACGCACGCACGCAC  650

seq1  GTGCGTACACACACACATACACAGACACACACAGTACTGAGAACTGAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTACACACACACATACACAGACACACACAGTACTGAGAACTGAATC  700

seq1  TCGGGTCTCGGTCGCTGAGCTTTACCCATATCCCTGGTTTGTTTTGTTGT  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCGGGTCTCGGTCGCTGAGCTTTACCCATATCCCTGGTTT-TTTTGTTGT  749

seq1  TCCCGTCTGGGGCTGTGTGCATGCTAGGTGAGTGTCCTACCACAGAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTCTGGGGCTGTGTGCATGCTAGGTGAGTGTCCTACCACAGAGCAA  799

seq1  TCTCAGCAGATTTTTATGGAGCTTTTGCACACTAGATTCTATCACACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAGATTTTTATGGAGCTTTTGCACACTAGATTCTATCACACAGT  849

seq1  GAAATGGTTACTGTGAAATAAAGCCCCAGAGCATTCCTGCCCTGGAATGG  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGTACTGTGAAATAAAGCCCCAGAGCATTCCTGCCCTGGAATGG  899

seq1  AACCATGTACGTAGGTCTCTC-TGGCTTA-TGTCACTGCAG-TAGTTTTG  947
      ||||||||||||||||||||| ||||||| | ||||||||| ||||||||
seq2  AACCATGTACGTAGGTCTCTCTTGGCTTATTTTCACTGCAGTTAGTTTTG  949

seq1  CTTTT-GGAAAGAGAACTCCTTCTCCATCTGCTAGAGAGCACAGCAGAG-  995
      ||||| |||||||| ||||||||| |||||||||||||||||||||||| 
seq2  CTTTTGGGAAAGAG-ACTCCTTCTTCATCTGCTAGAGAGCACAGCAGAGT  998

seq1  GTGACCC--GCACT-GTTCT-GGGGAG-TGGGCTA  1025
      |||||||   |||| ||||| |||||| |||||||
seq2  GTGACCCCGCCACTGGTTCTGGGGGAGTTGGGCTA  1033

seq1: chrX_132679955_132680461
seq2: B6Ng01-163O17.g_162_678

seq1  ACAAAAAAAAAAAAATCTAAAAGCAAA---GGTTCAAGGGCCAAAGGGCC  47
      |||||||||||||||||  |    |||    |||  | |  ||    |  
seq2  ACAAAAAAAAAAAAATCACACTTTAAAATGTGTTATATG--CACCCTGTG  48

seq1  ATGATGTTGTTATTTAAAGTTTAAAGGAAGCTTCTTTCTAG--AGGTCT-  94
      || || ||||  ||| |   || |    ||  ||     ||  ||| || 
seq2  ATCATTTTGTATTTTCACCCTTTACTTCAGGATCCCCGGAGTTAGGCCTG  98

seq1  ---CTGTAAAGATGGAGGACAGGCTTTTC--TGGGGGAAAATCAGTTAAG  139
         ||||  | |   ||    ||||||||   |  ||| |  ||   |||
seq2  TACCTGTGCACACTCAG---TGGCTTTTCAAAGCAGGACACCCATGGAAG  145

seq1  AAAGGCCCG---CTTTCTTTGGAGCTGAGATGAAAGGATGGACCATGAAG  186
       |    | |   |    | |||||||||||  ||||||||||||||  ||
seq2  GAGTTACAGAGACAAAGTCTGGAGCTGAGACAAAAGGATGGACCATCTAG  195

seq1  AGACTGCCATATCCAGGGATCCACCCCATAATCAGCTTCCAAACGCTGAC  236
      |||||||||||||||| |||||| |||||||| ||| |||||||||||||
seq2  AGACTGCCATATCCAGAGATCCATCCCATAATTAGCCTCCAAACGCTGAC  245

seq1  ACCATTGCATACACTAACAAGATTTTGCTGAAAGGACCCTGATATAGCTG  286
      ||||||||| |||||| |||||||||||||||||||| ||||||||||||
seq2  ACCATTGCACACACTAGCAAGATTTTGCTGAAAGGACACTGATATAGCTG  295

seq1  TCTCTTGTGAGACTATGCCAGGACCTAGCAAACACATAAGTGGATGCTCA  336
      |||||||||||| || ||  || ||||||||||||| ||||||||| |||
seq2  TCTCTTGTGAGATTACGCTGGGGCCTAGCAAACACAGAAGTGGATGATCA  345

seq1  CAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAA  386
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAA  395

seq1  AGTACCCAAGGAGCT-AAGGGATCTGCAACCCTATAGGTGGAACAACATT  435
      | ||||||||||||| |||||| ||||||||||||||||||||||||| |
seq2  ATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAAT  445

seq1  ATGAACTAACCAGTACCCGGGAGCTCCTGACTCTAGCTGCATATGTATCA  485
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  ATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCA  495

seq1  AAAGATGGCCTAGTCGGCCATC  507
      ||||||||||||||||||||||
seq2  AAAGATGGCCTAGTCGGCCATC  517