BAC Information

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BAC

Clone NameB6Ng01-165C23
ChromosomeX (Build37)
Map Location 38,849,072 - 38,941,775
singlet/doubletdoublet
Overlap geneGria3
Upstream geneLOC385344
Downstream geneLOC100039802, LOC676077, Thoc2, LOC665488, EG333830, LOC100039838, Birc4, Stag2, LOC100039899, Sh2d1a, Odz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165C23.bB6Ng01-165C23.g
ACCDH957312DH957313
length1,1741,065
definitionDH957312|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C23, 5' end.DH957313|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,940,627 - 38,941,775)(38,849,072 - 38,850,130)
sequence
gaattccctttcatccagtctcacccagcgctgtatgaattgctggacca
ttgggttttcattgttgacaatctggaaacctgtaatgttggctccccca
tgcatgactctttccagtacaatgtcagtaaaaccctggaaagacagtga
aaaagatcatgactgtgagagacatacgtttctggtacatttatctgttg
gagagtaaggatgaaatgaaagattccttccctaggattatttattcgca
atgaagaaggccttggatatgaaaccaattcttaggccaccatgtgtttg
aaagtacaaacaaaatggagaaatggtacatgctttcatttttctgtctg
tgaccaatgcatgttttgcttttaagcaaatatttgatttcacttacctg
tattttcttcagtcttcctacagagacttcaaatataacactatgtgact
agagaatgttgaggatgtttggccttaagaagtgcgatagaaaatctttt
cttcaccttaacatgctgagcagagcaaagtgtttcagattcttgtgatg
agtatttagacatttgtgattcacagaaataccagtgagtgaagctgaca
gcttgcctggatatgatggcataaaccccagggtgcgtctcacatgaatc
cataaatgagtcttgacatctgtatagcatccgccatttgctccttcact
tgctctggttaccatctggtgtctctgtcacccaagtatttccaagtgct
ctccccagggttcacacctaagccttttctacatgggcactgccaactcc
cttgagtattactgtcttctgggatcccctgcccaggaattgcttctact
tctgttggatattggtctcatgtgctttgttgcgcatgtgtcagaatcct
taatgaatggatggcagctttctatatcaatgggaggcaaggtgggggga
aatttcagaaggagttggggggaagaggaaaccactaatcagaaaaatat
cgtatgaaaaatactccctatttttcagtaaacgaaaaaaaaaaaaacat
tgctttagaaaacatctaaactttttgtgggcacccagaaaaggaagaag
acactagcatctcggggaatttcctttatttttttcaaattaggaaggtt
ggctgagttctgagagttttcctc
gaattctctggtgctaactgcctcagcgggctttctcagcagtagaaggg
aggctaattaagatcatgtcaggcaagaaggctgacaggttaggttcctg
ggccacattgaacttttagaaggtgttgtttcaacttcactgccgacagg
cagcatttggctaggcactgatttcatagtaggtctccagttcacttcca
caggtccttgcatcaacaggcctccgttttgttaaggacttacatccttc
tccttggggtaattaagcgccagtgtgtttgctttcaattgcattactct
ggctctctttcatttgaatttttaatatgcttgtaaacaaagacaacaat
taatagtctggtcattttccctactaaatcatgtgtttgtgtgctgagtg
tcttaccaacatacagcatctagaggtgagcttaggacaaataaaggtag
ctccgcatctcacagaaggtagaaaatgggagaggcatatggaactcatt
ataccaagttgtagcttagactgaaaatataaatagcttcccctccccca
aataaaggtttccattatttcacagataacggatctacagtgagttatta
agaacaagagagatatttggagggttttttgaactaaggatttcacaaat
tacatagtagattgttttttgagcccatatttatattctcataggcatac
aatcatatgcaatgctggcactataacccctaagatttaacgttaggagt
atatcattcatctcggctgtataaaggaaaggaaaggctcagaaatagat
acatgttatccaggaacattctgtctcctctcacataatcagggtttcta
accactgtcaaaagataaacacagctggacacccgacacttgagcagatt
ttagtcagtaacatagtattgcaataagggaaggattcagcataaactga
agtcatcttcaattcttacaaaagttcctgggtacttgagagaaaaacgt
gagttaactggggagaaatgtgagtagctgtcctctaattaccgtttttt
gtgaaagatccaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_38940627_38941775
seq2: B6Ng01-165C23.b_43_1216 (reverse)

seq1  GAGGAAAA--CTCAGAACT-AGCCAAC--TCCTAAATTTG--AAAAATAA  43
      ||||||||  ||||||||| |||||||  |||| ||||||  ||||||||
seq2  GAGGAAAACTCTCAGAACTCAGCCAACCTTCCT-AATTTGAAAAAAATAA  49

seq1  AGGAAATTCCC--AGATGCTAGTGTCTTCTTCC--TTCTTGCTG-CCAC-  87
      |||||||||||  ||||||||||||||||||||  |||| | || |||| 
seq2  AGGAAATTCCCCGAGATGCTAGTGTCTTCTTCCTTTTCTGGGTGCCCACA  99

seq1  AAAAGTTT-GATG-TCTCT-AAGC-ATG-TTTTTTTTTTTTCGTTTACTG  132
      |||||||| |||| | ||| |||| ||| |||||||||||||||||||||
seq2  AAAAGTTTAGATGTTTTCTAAAGCAATGTTTTTTTTTTTTTCGTTTACTG  149

seq1  -AAAATAGGG-GTATTTTTCATACGATA-TATTCTGATTA-TGGTTTCCT  178
       ||||||||| ||||||||||||||||| | ||||||||| |||||||||
seq2  AAAAATAGGGAGTATTTTTCATACGATATTTTTCTGATTAGTGGTTTCCT  199

seq1  CT--CCCCCAACTCC-TCTGAGATTT-CCCCCACCTTGCCTCCCATTGAT  224
      ||  ||||||||||| ||||| |||| |||||||||||||||||||||||
seq2  CTTCCCCCCAACTCCTTCTGAAATTTCCCCCCACCTTGCCTCCCATTGAT  249

seq1  ATAGAAAGCTGCCATCCATTCATTAAGGATTCTGACACATGCGCAACAAA  274
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGCTGCCATCCATTCATTAAGGATTCTGACACATGCGCAACAAA  299

seq1  GCACATGAGACCAATATCCAACAGAAGTAGAAGCAATTCCTGGGCAGGGG  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAGACCAATATCCAACAGAAGTAGAAGCAATTCCTGGGCAGGGG  349

seq1  ATCCCAGAAGACAGTAATACTCAAGGGAGTTGGCAGTGCCCATGTAGAAA  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAAGACAGTAATACTCAAGGGAGTTGGCAGTGCCCATGTAGAAA  399

seq1  AGGCTTAGGTGTGAACCCTGGGGAGAGCACTTGGAAATACTTGGGTGACA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGGTGTGAACCCTGGGGAGAGCACTTGGAAATACTTGGGTGACA  449

seq1  GAGACACCAGATGGTAACCAGAGCAAGTGAAGGAGCAAATGGCGGATGCT  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACCAGATGGTAACCAGAGCAAGTGAAGGAGCAAATGGCGGATGCT  499

seq1  ATACAGATGTCAAGACTCATTTATGGATTCATGTGAGACGCACCCTGGGG  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATGTCAAGACTCATTTATGGATTCATGTGAGACGCACCCTGGGG  549

seq1  TTTATGCCATCATATCCAGGCAAGCTGTCAGCTTCACTCACTGGTATTTC  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCATCATATCCAGGCAAGCTGTCAGCTTCACTCACTGGTATTTC  599

seq1  TGTGAATCACAAATGTCTAAATACTCATCACAAGAATCTGAAACACTTTG  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATCACAAATGTCTAAATACTCATCACAAGAATCTGAAACACTTTG  649

seq1  CTCTGCTCAGCATGTTAAGGTGAAGAAAAGATTTTCTATCGCACTTCTTA  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCAGCATGTTAAGGTGAAGAAAAGATTTTCTATCGCACTTCTTA  699

seq1  AGGCCAAACATCCTCAACATTCTCTAGTCACATAGTGTTATATTTGAAGT  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAACATCCTCAACATTCTCTAGTCACATAGTGTTATATTTGAAGT  749

seq1  CTCTGTAGGAAGACTGAAGAAAATACAGGTAAGTGAAATCAAATATTTGC  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGGAAGACTGAAGAAAATACAGGTAAGTGAAATCAAATATTTGC  799

seq1  TTAAAAGCAAAACATGCATTGGTCACAGACAGAAAAATGAAAGCATGTAC  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCAAAACATGCATTGGTCACAGACAGAAAAATGAAAGCATGTAC  849

seq1  CATTTCTCCATTTTGTTTGTACTTTCAAACACATGGTGGCCTAAGAATTG  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCCATTTTGTTTGTACTTTCAAACACATGGTGGCCTAAGAATTG  899

seq1  GTTTCATATCCAAGGCCTTCTTCATTGCGAATAAATAATCCTAGGGAAGG  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATATCCAAGGCCTTCTTCATTGCGAATAAATAATCCTAGGGAAGG  949

seq1  AATCTTTCATTTCATCCTTACTCTCCAACAGATAAATGTACCAGAAACGT  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCATTTCATCCTTACTCTCCAACAGATAAATGTACCAGAAACGT  999

seq1  ATGTCTCTCACAGTCATGATCTTTTTCACTGTCTTTCCAGGGTTTTACTG  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTCACAGTCATGATCTTTTTCACTGTCTTTCCAGGGTTTTACTG  1049

seq1  ACATTGTACTGGAAAGAGTCATGCATGGGGGAGCCAACATTACAGGTTTC  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTACTGGAAAGAGTCATGCATGGGGGAGCCAACATTACAGGTTTC  1099

seq1  CAGATTGTCAACAATGAAAACCCAATGGTCCAGCAATTCATACAGCGCTG  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGTCAACAATGAAAACCCAATGGTCCAGCAATTCATACAGCGCTG  1149

seq1  GGTGAGACTGGATGAAAGGGAATTC  1149
      |||||||||||||||||||||||||
seq2  GGTGAGACTGGATGAAAGGGAATTC  1174

seq1: chrX_38849072_38850130
seq2: B6Ng01-165C23.g_67_1131

seq1  GAATTCTCTGGTGCTAACTGCCTCAGCGGGCTTTCTCAGCAGTAGAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTGCTAACTGCCTCAGCGGGCTTTCTCAGCAGTAGAAGGG  50

seq1  AGGCTAATTAAGATCATGTCAGGCAAGAAGGCTGACAGGTTAGGTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATTAAGATCATGTCAGGCAAGAAGGCTGACAGGTTAGGTTCCTG  100

seq1  GGCCACATTGAACTTTTAGAAGGTGTTGTTTCAACTTCACTGCCGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATTGAACTTTTAGAAGGTGTTGTTTCAACTTCACTGCCGACAGG  150

seq1  CAGCATTTGGCTAGGCACTGATTTCATAGTAGGTCTCCAGTTCACTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGGCTAGGCACTGATTTCATAGTAGGTCTCCAGTTCACTTCCA  200

seq1  CAGGTCCTTGCATCAACAGGCCTCCGTTTTGTTAAGGACTTACATCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTTGCATCAACAGGCCTCCGTTTTGTTAAGGACTTACATCCTTC  250

seq1  TCCTTGGGGTAATTAAGCGCCAGTGTGTTTGCTTTCAATTGCATTACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGGGTAATTAAGCGCCAGTGTGTTTGCTTTCAATTGCATTACTCT  300

seq1  GGCTCTCTTTCATTTGAATTTTTAATATGCTTGTAAACAAAGACAACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTTTCATTTGAATTTTTAATATGCTTGTAAACAAAGACAACAAT  350

seq1  TAATAGTCTGGTCATTTTCCCTACTAAATCATGTGTTTGTGTGCTGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTCTGGTCATTTTCCCTACTAAATCATGTGTTTGTGTGCTGAGTG  400

seq1  TCTTACCAACATACAGCATCTAGAGGTGAGCTTAGGACAAATAAAGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAACATACAGCATCTAGAGGTGAGCTTAGGACAAATAAAGGTAG  450

seq1  CTCCGCATCTCACAGAAGGTAGAAAATGGGAGAGGCATATGGAACTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCATCTCACAGAAGGTAGAAAATGGGAGAGGCATATGGAACTCATT  500

seq1  ATACCAAGTTGTAGCTTAGACTGAAAATATAAATAGCTTCCCCTCCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGTTGTAGCTTAGACTGAAAATATAAATAGCTTCCCCTCCCCCA  550

seq1  AATAAAGGTTTCCATTATTTCACAGATAACGGATCTACAGTGAGTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGTTTCCATTATTTCACAGATAACGGATCTACAGTGAGTTATTA  600

seq1  AGAACAAGAGAGATATTTGGAGGGTTTTTTGAACTAAGGATTTCACAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGAGAGATATTTGGAGGGTTTTTTGAACTAAGGATTTCACAAAT  650

seq1  TACATAGTAGATTGTTTTTTGAGCCCATATTTATATTCTCATAGGCATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTAGATTGTTTTTTGAGCCCATATTTATATTCTCATAGGCATAC  700

seq1  AATCATATGCAATGCTGGCACTATAACCCCTAAGATTTAACGTTAGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATGCAATGCTGGCACTATAACCCCTAAGATTTAACGTTAGGAGT  750

seq1  ATATCATTCATCTCGGCTGTATAAAGGAAAGGAAAGGCTCAGAAATAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTCATCTCGGCTGTATAAAGGAAAGGAAAGGCTCAGAAATAGAT  800

seq1  ACATGTTATCCAGGAACATTCTGTCTCCTCTCACATAATCAGGGTTTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTATCCAGGAACATTCTGTCTCCTCTCACATAATCAGGGTTTCTA  850

seq1  ACCACTGTCAAAAGATAAACACAGCTGGACACCCGACACTTGAGCAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTCAAAAGATAAACACAGCTGGACACCCGACACTTGAGCAGATT  900

seq1  TTAGTCAGTAACATAGTATTGCAATAAGGGAAGGATTCAGCATAAACTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAGTAACATAGTATTGCAATAAGGGAAGGATTCAGCATAAACTGA  950

seq1  AGTCATCTTCAATTCTTACAAAAGTTCCTGGGTACTTGAGAG-AAAACGT  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTCATCTTCAATTCTTACAAAAGTTCCTGGGTACTTGAGAGAAAAACGT  1000

seq1  GAG-TAACT-GGGAG-AATGTGAGTAGCTGTCCTC-AATTACCG-TGTAT  1044
      ||| ||||| ||||| ||||||||||||||||||| |||||||| | | |
seq2  GAGTTAACTGGGGAGAAATGTGAGTAGCTGTCCTCTAATTACCGTTTTTT  1050

seq1  GTGAAAGATCCAAAT  1059
      |||||||||||||||
seq2  GTGAAAGATCCAAAT  1065