BAC Information

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BAC

Clone NameB6Ng01-165P12
ChromosomeX (Build37)
Map Location 101,157,891 - 101,344,051
singlet/doubletdoublet
Overlap geneRnf12, C77370
Upstream geneEG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430
Downstream geneVcp-ps, EG621542, Uprt, Zdhhc15, Magee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165P12.bB6Ng01-165P12.g
ACCDH957879DH957880
length1,0661,012
definitionDH957879|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P12, 5' end.DH957880|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,342,975 - 101,344,051)(101,157,891 - 101,158,915)
sequence
gaattcaattttactagttacctttggctagcctattcaagtcccatcat
tttcaaagagttttttttttcaactactatagctcagatgacctctttat
ttaaaccacagctcacctctattttttgttctttaagaaatattttgcct
gagtgtatgtatgtggaacatgtgcatgctcggtgccagaggaagtcaga
atagggcatcaggtcctttgaaactggagttacagatgacttcaagccaa
catgtaaggtgccaggtattgaacccacctgagtcctatacaagagcaac
cagtgctcttcaccactgaaccatctctccggcagtagtttttgttctta
tatacattagctactgtacattgttttacgttttgtttaagtagaatata
tatacctagacactctacactacaggataagtatcaccacacataatttc
aggttataccacagaaccataatgacaaaaccaccatggttatggcacaa
aataagcacatagatcaatgggacatactagaaatcattcatatatatca
gcacgtgctgttactcttttagccatcttactggttcgagtctcacatag
tttgtaactgtttgtgtcaattgcatatttagttgtatgttgttagctaa
ttagtttgtgtcagttacatattcttccttatattcttgtctagttgttt
tcatgcacaccagaaatagcatccttaagataatcagaagcctttttggg
gactgagagtatactttctctttttagtcccaccagtaagtgtcatgaaa
cacttacaaccgaaataagatattttttggatttttgagtcttggatcca
ttttactttgtgggctctataacactttaggattccatggtatgactgtg
aatgtgactcaaatccagaacatgagttatattcctaatagatgttccag
aaatgttgtagaatattatatcagattcaactataagtagaaacgaatta
tacctggaatggagatcaactggctaatggatatatttgactttccattg
agtctccaattaaaat
gaattctcagacaaccagcggtcgatgcagtggacgtggtactcatggga
gcaaggtagtttacgaagtttgttgccttctgtgtattctgtaatgcaaa
cactacacgttttcaatgcatcattttcaccaaagcttctcattgccaag
ttatcgatctgttctttagtgagtcctctaggttggtcttcatcatcttc
atttaaaagaaaaaactgagccagactaaggaatggcagagagccacttt
catcaaatgtgactggggccctatgtcgaccatctcttctggatgggcca
gacgagcctccttcactactgccttcgaacatctctgagctactctcgga
actttcaccacttgaactggggctaggacttgagctggaactggaaccag
agctgttaccgccaccagagctccctcttccattccgtgactctactctc
tccacatttcggctggagactgaggcactaggctctgaatcactgtcact
gtacataaagtagcttagctcaccaaagcctgtcattatctgccttaaca
tggtttgaattgcaacagatgtagtttcacttaatccagtatttaagatt
ctgcgaataggaatcctgatagtactcacataggttctcacacctgcacg
ttcagaacgggaaaaggtacgcctaaaacctccacgttcactttcataag
taactgtgttgtcggagcctgagatcttgatcgagttctgctagctatac
tatctctctgccggtattctccaggacgaactcttcttacttgaagatca
agaactatgggtgggaggtcttggccagatcctgaggattcactattgct
acttgtgttctgagagtttgtccctgagaggggttctgatccagaagctg
caaaagacctctacctacaactccggtcagattcctgctgctcagggtac
atgggtgccggttctagacctccttcagctcggttccgaagactgctcca
aggtcggactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_101342975_101344051
seq2: B6Ng01-165P12.b_42_1107 (reverse)

seq1  AATTTAATTGGAAGACTCAAATGGAAAAGTAAAAAATAATCCATTAGCCA  50
      | ||||||||| |||||| ||||| ||||| ||| || ||||||||||||
seq2  ATTTTAATTGG-AGACTC-AATGG-AAAGTCAAATAT-ATCCATTAGCCA  46

seq1  GTCTGATCTCAATTTTCAGGTAATTATTTGTTTCTACTTTATAGTTTGAA  100
      || ||||||| | || ||||| || ||| |||||||| |||||| |||||
seq2  GT-TGATCTCCA-TTCCAGGT-ATAATTCGTTTCTAC-TTATAG-TTGAA  91

seq1  TCTTGAATTATAATATTCTAACAACATTTCTGGAACATCTATTAGGAATA  150
      || |||  ||||||||||| ||||||||||||||||||||||||||||||
seq2  TC-TGA--TATAATATTCT-ACAACATTTCTGGAACATCTATTAGGAATA  137

seq1  TAACATCATGTTCTGGATTTGAGTCAACATTCACAGTACTACCATGGAAT  200
      |||| |||||||||||||||||||| |||||||||||  |||||||||||
seq2  TAAC-TCATGTTCTGGATTTGAGTC-ACATTCACAGTCATACCATGGAAT  185

seq1  -CTAAAGTGTTATAGAGGCCCACAATAGTACAATGGATCC-AGACTCAAA  248
       ||||||||||||||| |||||||| |||| ||||||||| |||||||||
seq2  CCTAAAGTGTTATAGA-GCCCACAA-AGTAAAATGGATCCAAGACTCAAA  233

seq1  TATCC-AGAAATATCTTATTTCGGTTGTAAGTGTTTCATGACACTTACTG  297
       |||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAAAAATATCTTATTTCGGTTGTAAGTGTTTCATGACACTTACTG  283

seq1  GTGGGACTAAAAAGAG-AAGTATACTCTCAGT-CCCAAAAAGGCTTCTGA  345
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  GTGGGACTAAAAAGAGAAAGTATACTCTCAGTCCCCAAAAAGGCTTCTGA  333

seq1  TTATCTTAAGGATGCTATTTCTGGTGTGCATG-AAACAACTAGACAAGAA  394
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTATCTTAAGGATGCTATTTCTGGTGTGCATGAAAACAACTAGACAAGAA  383

seq1  TATAAGGAAGAATATGTAACTGACACAAACTAATTAGCTAACAACATACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGAAGAATATGTAACTGACACAAACTAATTAGCTAACAACATACA  433

seq1  ACTAAATATGCAATTGACACAAACAGTTACAAACTATGTGAGACTCGAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATATGCAATTGACACAAACAGTTACAAACTATGTGAGACTCGAAC  483

seq1  CAGTAAGATGGCTAAAAGAGTAACAGCACGTGCTGATATATATGAATGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGATGGCTAAAAGAGTAACAGCACGTGCTGATATATATGAATGAT  533

seq1  TTCTAGTATGTCCCATTGATCTATGTGCTTATTTTGTGCCATAACCATGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTATGTCCCATTGATCTATGTGCTTATTTTGTGCCATAACCATGG  583

seq1  TGGTTTTGTCATTATGGTTCTGTGGTATAACCTGAAATTATGTGTGGTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTCATTATGGTTCTGTGGTATAACCTGAAATTATGTGTGGTGA  633

seq1  TACTTATCCTGTAGTGTAGAGTGTCTAGGTATATATATTCTACTTAAACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCCTGTAGTGTAGAGTGTCTAGGTATATATATTCTACTTAAACA  683

seq1  AAACGTAAAACAATGTACAGTAGCTAATGTATATAAGAACAAAAACTACT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTAAAACAATGTACAGTAGCTAATGTATATAAGAACAAAAACTACT  733

seq1  GCCGGAGAGATGGTTCAGTGGTGAAGAGCACTGGTTGCTCTTGTATAGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGAGAGATGGTTCAGTGGTGAAGAGCACTGGTTGCTCTTGTATAGGA  783

seq1  CTCAGGTGGGTTCAATACCTGGCACCTTACATGTTGGCTTGAAGTCATCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGGGTTCAATACCTGGCACCTTACATGTTGGCTTGAAGTCATCT  833

seq1  GTAACTCCAGTTTCAAAGGACCTGATGCCCTATTCTGACTTCCTCTGGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCAGTTTCAAAGGACCTGATGCCCTATTCTGACTTCCTCTGGCA  883

seq1  CCGAGCATGCACATGTTCCACATACATACACTCAGGCAAAATATTTCTTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCATGCACATGTTCCACATACATACACTCAGGCAAAATATTTCTTA  933

seq1  AAGAACAAAAAATAGAGGTGAGCTGTGGTTTAAATAAAGAGGTCATCTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAAAATAGAGGTGAGCTGTGGTTTAAATAAAGAGGTCATCTGA  983

seq1  GCTATAGTAGTTGAAAAAAAAAACTCTTTGAAAATGATGGGACTTGAATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTAGTTGAAAAAAAAAACTCTTTGAAAATGATGGGACTTGAATA  1033

seq1  GGCTAGCCAAAGGTAACTAGTAAAATTGAATTC  1077
      |||||||||||||||||||||||||||||||||
seq2  GGCTAGCCAAAGGTAACTAGTAAAATTGAATTC  1066

seq1: chrX_101157891_101158915
seq2: B6Ng01-165P12.g_70_1081

seq1  GAATTCTCAGACAACCAGCGGTCGATGCAGTGGACGTGGTACTCATGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGACAACCAGCGGTCGATGCAGTGGACGTGGTACTCATGGGA  50

seq1  GCAAGGTAGTTTACGAAGTTTGTTGCCTTCTGTGTATTCTGTAATGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTAGTTTACGAAGTTTGTTGCCTTCTGTGTATTCTGTAATGCAAA  100

seq1  CACTACACGTTTTCAATGCATCATTTTCACCAAAGCTTCTCATTGCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACACGTTTTCAATGCATCATTTTCACCAAAGCTTCTCATTGCCAAG  150

seq1  TTATCGATCTGTTCTTTAGTGAGTCCTCTAGGTTGGTCTTCATCATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGATCTGTTCTTTAGTGAGTCCTCTAGGTTGGTCTTCATCATCTTC  200

seq1  ATTTAAAAGAAAAAACTGAGCCAGACTAAGGAATGGCAGAGAGCCACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAGAAAAAACTGAGCCAGACTAAGGAATGGCAGAGAGCCACTTT  250

seq1  CATCAAATGTGACTGGGGCCCTATGTCGACCATCTCTTCTGGATGGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGTGACTGGGGCCCTATGTCGACCATCTCTTCTGGATGGGCCA  300

seq1  GACGAGCCTCCTTCACTACTGCCTTCGAACATCTCTGAGCTACTCTCGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGCCTCCTTCACTACTGCCTTCGAACATCTCTGAGCTACTCTCGGA  350

seq1  ACTTTCACCACTTGAACTGGGGCTAGGACTTGAGCTGGAACTGGAACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACCACTTGAACTGGGGCTAGGACTTGAGCTGGAACTGGAACCAG  400

seq1  AGCTGTTACCGCCACCAGAGCTCCCTCTTCCATTCCGTGACTCTACTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTACCGCCACCAGAGCTCCCTCTTCCATTCCGTGACTCTACTCTC  450

seq1  TCCACATTTCGGCTGGAGACTGAGGCACTAGGCTCTGAATCACTGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTTCGGCTGGAGACTGAGGCACTAGGCTCTGAATCACTGTCACT  500

seq1  GTACATAAAGTAGCTTAGCTCACCAAAGCCTGTCATTATCTGCCTTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAAAGTAGCTTAGCTCACCAAAGCCTGTCATTATCTGCCTTAACA  550

seq1  TGGTTTGAATTGCAACAGATGTAGTTTCACTTAATCCAGTATTTAAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGAATTGCAACAGATGTAGTTTCACTTAATCCAGTATTTAAGATT  600

seq1  CTGCGAATAGGAATCCTGATAGTACTCACATAGGTTCTCACACCTGCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGAATAGGAATCCTGATAGTACTCACATAGGTTCTCACACCTGCACG  650

seq1  TTCAGAACGGGAAAAGGTACGCCTAAAACCTCCACGTTCACTTTCATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACGGGAAAAGGTACGCCTAAAACCTCCACGTTCACTTTCATAAG  700

seq1  TAACTGTGTTGTTCGGAGCCTGAGATCTTGATCGAGTTCTGCTAGCTATA  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTGTTG-TCGGAGCCTGAGATCTTGATCGAGTTCTGCTAGCTATA  749

seq1  CTATCTCTCTGCCGGTATTCTCCAGGACGAACTCTTCTTACTTGAAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTCTGCCGGTATTCTCCAGGACGAACTCTTCTTACTTGAAGATC  799

seq1  AAGAACTAT-GGTTGGAGGTCTTTGGCCAGATCCTGAGGATTCACTATTG  849
      ||||||||| ||| ||||||| ||||||||||||||||||||||||||||
seq2  AAGAACTATGGGTGGGAGGTC-TTGGCCAGATCCTGAGGATTCACTATTG  848

seq1  CTACCTGTG-TCTGAAGAGCTTGTCCCCTGAGAGGGGTTTCTTGATCCAG  898
      |||| |||| |||| |||| |||| ||||||||||||||   ||||||||
seq2  CTACTTGTGTTCTG-AGAGTTTGT-CCCTGAGAGGGGTT--CTGATCCAG  894

seq1  AAGCTGCAAAAAGACCTCTACCTAACAACTCCGGTCCAGATATCTGCTGT  948
      ||||||| ||||||||||||||| ||||||||||| |||||  |||||| 
seq2  AAGCTGC-AAAAGACCTCTACCT-ACAACTCCGGT-CAGATTCCTGCTG-  940

seq1  CTCAGGGTCACAT-GGTGCCGGGTTCTAGAACTTCCTTCAGGCTCGTTTT  997
      |||||||| |||| |||||| |||||||| || ||||||| |||||  ||
seq2  CTCAGGGT-ACATGGGTGCC-GGTTCTAG-ACCTCCTTCA-GCTCG-GTT  985

seq1  CCGAAGACTGCTCCAAGGTCGGAGCTCT  1025
      ||||||||||||||||||||||| ||||
seq2  CCGAAGACTGCTCCAAGGTCGGA-CTCT  1012