BAC Information

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BAC

Clone NameB6Ng01-166C22
ChromosomeX (Build37)17 (Build37)
Map Location 166,301,065 - 166,301,97944,195,440 - 44,196,677
singlet/doubletsingletsinglet
Overlap geneMid1
Upstream geneArhgap6, Amelx, Hccs, LOC100040950, BC022960, 4933400A11Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166C22.bB6Ng01-166C22.g
ACCDH958030DH958031
length1,0951,231
definitionDH958030|Mus musculus domesticus DNA, BAC clone: B6Ng01-166C22, 5' end.DH958031|Mus musculus domesticus DNA, BAC clone: B6Ng01-166C22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(166,301,065 - 166,301,979)(44,195,440 - 44,196,677)
sequence
gaattcctcattctcctatctcaaaaccttctaagtgctgcttacaggtg
taggtcaccacatccagctttctctttctctttctctttctctttctctt
tctctttctctttctctttctctttctctttctctttctccttctgctgc
tctttctctgtcttcctcttttccttctgggttcaaattctctttctgaa
gttcttcctctgatttcccttctcttgctttgactttctccccttcaata
caaatccctggaggtctgctgcgtggagtggatgattaattatagttcag
aagaactgccgaaagaaaaaaaaaacctgattgatcgaaattttgccttt
ctccctgtttttaagctcttcatctggttcaacttcctttaaatgaaaca
gaattagttggagtagaaagagggatacttttctactggcactggcgaat
ttttcattattgtcatctctgtgttaatgcaaccacaataacaacaaaaa
caaaaacaaaacaaactaacaaaataccccacacacttccagaggtcctt
ttttaatttgaataaaatgaaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaaaaagaaagaaggaaggaaggaaagaaagagtgaaagaaaga
aatagggaaagaaagcagaaagaaagaacgaaagaaggaaagaaaaggga
ttgaaggagggaaggacagaaagacagatagaaggacgaaagaaagaaga
taggatgaaagaaataaagaaagaaggaagaaaactattattccatatgg
ctctgtcttcctgctgcctggcagaactctcaccgcttctccagcagtat
gtttgcttttggcctcatattccccaccatgatgataattaaatagaacc
tcggaactggtaacaaaaccccaatttaagttgctgtggtcacctgtctc
ttgctcaacatcagatgctgagtagaccgcatctaaatccactgtctact
ggtttggtacacttgctcaaatttcaaggtccatagttaggaaatcactg
tgtcaagaaaatgaggcagagcttggagatatagactcattgtac
gaattcccataagattcaaaagattgagagttgatacaggggatgtgtga
agttctgttgaagaacagaagtacagataaagttgggaagccaactttca
caattccatcaccaacagaacactgcaactgcttttcagagacagactcc
cctagctcatcattctcaaatagaatgatggctgaaccattgccatggac
acaagcagaagtgacagaacctgcatcctgaagatgatggagggcctctg
ctcttcataatgcaaaccaagagagaggaaatggccaactgcaccaaagc
atgggaattcaccttgtccaaaccaaagcatcatgttaatgataaagaca
ctgggggactatacaaacacaaaagacaagtatatgcacttatggcttat
aaattactcggcagctgctgaggctggacatccttcatgctcccctcaaa
cacttaacggccttaaggctacatttatatctctcttgggactaatgagg
gttatggataggaaagaacacagcataactttccttacattagtgttccc
aacaatcccccttgcaggatgatagtgttagcaggtagggtcacaaatac
aaacatagaacccatccccaaaggaatgcagaactctgtgatggtcccag
tgggaagacattttaccctggactaaatacccattcctgcaagaagagat
aagaaggtctactaatacagggaaaaaatattgagcattgtggggagcta
gattgacccacggttttcccagaggccctgatgaaaagacaaagggaact
gtagctctgtgtccttggctaagtgcaagtttggccatcctgatctgaga
atgaagccagtgcctggaaagagagaaggcgtcaagtgttgtgttttctg
tggactcgactctgactgtgggctgtgtttctaaagcagctgtgtctgag
tagcctgcattctctttgctggcatttgtcggacttcactctctactgac
cttggtcacttccctctgcaaatagtttataggatgtacacttcttaata
atcttgcctggcataaatcatcagtttatggaagacctctggttccaggg
aatgtttatcttccttttatacctttccatctttccaatcctaggcttcc
tactcaacacctgctccgatgccgattcttgcagttcttgtccagagaca
tggaatacacagaaacttctctctatcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_166301065_166301979
seq2: B6Ng01-166C22.b_232_1130

seq1  TGAAGTTTGTAAGACTGATTTCCCTTCTCTTGCTTTGACTTTCTCCTCTT  50
      ||||| || |    |||||||||||||||||||||||||||||||| |||
seq2  TGAAG-TTCTTCCTCTGATTTCCCTTCTCTTGCTTTGACTTTCTCCCCTT  49

seq1  CAATACAGTTCCCTGGTGGTCTGCTGCTTGGAGTGGATGATTAATTATAG  100
      |||||||  ||||||| |||||||||| ||||||||||||||||||||||
seq2  CAATACAAATCCCTGGAGGTCTGCTGCGTGGAGTGGATGATTAATTATAG  99

seq1  TTAAAGAAGAACTGCCGAAAGAAAAAAAAAACCTGATTGATCAGTATTTT  150
      ||  ||||||||||||||||||||||||||||||||||||||   |||||
seq2  TT-CAGAAGAACTGCCGAAAGAAAAAAAAAACCTGATTGATCGAAATTTT  148

seq1  GCCTTTCTCTCTATTTTTAAGCTCTTAATATTGTTCAACTTCTTTTAAAT  200
      ||||||||| || ||||||||||||| || | |||||||||| |||||||
seq2  GCCTTTCTCCCTGTTTTTAAGCTCTTCATCTGGTTCAACTTCCTTTAAAT  198

seq1  GAAAGAGAATTAGTTGGAGTAGAAAGAGGGATACTTTTCTACTGGCACTG  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAATTAGTTGGAGTAGAAAGAGGGATACTTTTCTACTGGCACTG  248

seq1  GCTAATTTTTCATTATTGTCATCTCTGTGTTAATGCAACCACAATAACAA  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATTTTTCATTATTGTCATCTCTGTGTTAATGCAACCACAATAACAA  298

seq1  CAAAAACAAAAACAAAACAAACAAACAAAATACCCCACACACTTCCAAAG  350
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  CAAAAACAAAAACAAAACAAACTAACAAAATACCCCACACACTTCCAGAG  348

seq1  GTCCTTTTTTAATTTAAATAAAATGAAAAGAAAGAAAGAAAGAAAGAAAG  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTTTAATTTGAATAAAATGAAAAGAAAGAAAGAAAGAAAGAAAG  398

seq1  AAAGAAAGAAAGAAAAAAGAAAGAAGGAAGGAAGGAAAGAAAGAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AAAGAAAGAAAGAAAAAAGAAAGAAGGAAGGAAGGAAAGAAAGAGTGAAA  448

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  500
      |||||||| |  |||||||||      |||||||||||| ||||||| ||
seq2  GAAAGAAATAGGGAAAGAAAG-----CAGAAAGAAAGAACGAAAGAAGGA  493

seq1  AAGAAAAAAGAAAGAAGGAAGGAAGGAAAGAAAGAAAGAAAGAAAGAAAG  550
      |||||||  ||  |||||| ||||||| ||||||| ||| || ||| | |
seq2  AAGAAAAGGGATTGAAGGAGGGAAGGACAGAAAGACAGATAG-AAGGACG  542

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAACT  600
      |||||||| |||| || | |||||||| |||||||| ||| |||||||||
seq2  AAAGAAAG-AAGATAGGATGAAAGAAATAAAGAAAG-AAGGAAGAAAACT  590

seq1  ATTATTCCATATGGCTCTGTCTTCCTGCTGCCTGGCAGAACTCTCAGCCG  650
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTATTCCATATGGCTCTGTCTTCCTGCTGCCTGGCAGAACTCTCA-CCG  639

seq1  CTTCTCCAGCATTATGTTTGCTTTTGGCCTCCATATTCCCCACCATGATG  700
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  CTTCTCCAGCAGTATGTTTGCTTTTGGCCT-CATATTCCCCACCATGATG  688

seq1  ATAATTAAATAG-ACCTCTGAAACTGTAAACAAACCCCAGTTAAAGTTGC  749
      |||||||||||| ||||| |||   ||||  |||||||| || |||||||
seq2  ATAATTAAATAGAACCTCGGAACTGGTAACAAAACCCCAATTTAAGTTGC  738

seq1  TGTGGTCATCTTGTCTCTT-CACAACAACAGAACACTGAGTAAGACAGCA  798
      |||||||| | |||||||| | ||||| ||| |  |||||| |||| |||
seq2  TGTGGTCA-CCTGTCTCTTGCTCAACATCAG-ATGCTGAGT-AGACCGCA  785

seq1  TCTAAAACAACTGTCCATTGTTTTGGTACACATGCTACAAATTTCAAGGT  848
      |||||| | |||||| | || |||||||||| |||| |||||||||||||
seq2  TCTAAATCCACTGTCTACTGGTTTGGTACACTTGCT-CAAATTTCAAGGT  834

seq1  CCCATAGTTAGGAAATTCACTGTGTCAAGAAATAGAGGCCAGAGC-TGGA  897
       |||||||||||||| ||||||||||||||||  |||| |||||| ||||
seq2  -CCATAGTTAGGAAA-TCACTGTGTCAAGAAAATGAGG-CAGAGCTTGGA  881

seq1  GATAT-GACTCATTTGTAC  915
      ||||| |||||| ||||||
seq2  GATATAGACTCA-TTGTAC  899

seq1: chr17_44195440_44196677
seq2: B6Ng01-166C22.g_67_1297

seq1  GAATTCCCATAAGATTCAAAAGATTGAGAGTTGATACAGGGGATGTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAAGATTCAAAAGATTGAGAGTTGATACAGGGGATGTGTGA  50

seq1  AGTTCTGTTGAAGAACAGAAGTACAGATAAAGTTGGGAAGCCAACTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTTGAAGAACAGAAGTACAGATAAAGTTGGGAAGCCAACTTTCA  100

seq1  CAATTCCATCACCAACAGAACACTGCAACTGCTTTTCAGAGACAGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCATCACCAACAGAACACTGCAACTGCTTTTCAGAGACAGACTCC  150

seq1  CCTAGCTCATCATTCTCAAATAGAATGATGGCTGAACCATTGCCATGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCATCATTCTCAAATAGAATGATGGCTGAACCATTGCCATGGAC  200

seq1  ACAAGCAGAAGTGACAGAACCTGCATCCTGAAGATGATGGAGGGCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGAAGTGACAGAACCTGCATCCTGAAGATGATGGAGGGCCTCTG  250

seq1  CTCTTCATAATGCAAACCAAGAGAGAGGAAATGGCCAACTGCACCAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATAATGCAAACCAAGAGAGAGGAAATGGCCAACTGCACCAAAGC  300

seq1  ATGGGAATTCACCTTGTCCAAACCAAAGCATCATGTTAATGATAAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATTCACCTTGTCCAAACCAAAGCATCATGTTAATGATAAAGACA  350

seq1  CTGGGGGACTATACAAACACAAAAGACAAGTATATGCACTTATGGCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGACTATACAAACACAAAAGACAAGTATATGCACTTATGGCTTAT  400

seq1  AAATTACTCGGCAGCTGCTGAGGCTGGACATCCTTCATGCTCCCCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTCGGCAGCTGCTGAGGCTGGACATCCTTCATGCTCCCCTCAAA  450

seq1  CACTTAACGGCCTTAAGGCTACATTTATATCTCTCTTGGGACTAATGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAACGGCCTTAAGGCTACATTTATATCTCTCTTGGGACTAATGAGG  500

seq1  GTTATGGATAGGAAAGAACACAGCATAACTTTCCTTACATTAGTGTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGATAGGAAAGAACACAGCATAACTTTCCTTACATTAGTGTTCCC  550

seq1  AACAATCCCCCTTGCAGGATGATAGTGTTAGCAGGTAGGGTCACAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCCCCTTGCAGGATGATAGTGTTAGCAGGTAGGGTCACAAATAC  600

seq1  AAACATAGAACCCATCCCCAAAGGAATGCAGAACTCTGTGATGGTCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGAACCCATCCCCAAAGGAATGCAGAACTCTGTGATGGTCCCAG  650

seq1  TGGGAAGACATTTTACCCTGGACTAAATACCCATTCCTGCAAGAAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGACATTTTACCCTGGACTAAATACCCATTCCTGCAAGAAGAGAT  700

seq1  AAGAAGGTCTACTAATACAGGGAAAAAATATTGAGCATTGTGGGGAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTCTACTAATACAGGGAAAAAATATTGAGCATTGTGGGGAGCTA  750

seq1  GATTGACCCACGGTTTTCCCAGAGGCCCTGATGAAAAGACAAAGGGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACCCACGGTTTTCCCAGAGGCCCTGATGAAAAGACAAAGGGAACT  800

seq1  GTAGCTCTGTGTCCTTGGCTAAGTGCAAGTTTGGCCATCCTGATCTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTGTGTCCTTGGCTAAGTGCAAGTTTGGCCATCCTGATCTGAGA  850

seq1  ATGAAGCCAGTGCCTGGAAGGAGAGAAGGCGTCAAGTGTTGTGTTTTCTG  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGAAGCCAGTGCCTGGAAAGAGAGAAGGCGTCAAGTGTTGTGTTTTCTG  900

seq1  TGGACTCGACTCTGACTGTGGGCTGTGTTTCTAAAGCAGCTGTGTCTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGACTCGACTCTGACTGTGGGCTGTGTTTCTAAAGCAGCTGTGTCTGA-  949

seq1  GTAGCCTGCATTCTCTTTGCTGGCATTTGTCGGACTTCACTCTCTACTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGCATTCTCTTTGCTGGCATTTGTCGGACTTCACTCTCTACTGA  999

seq1  CCTTGGTCACTTTCCCTCTGCAAATAGTATATAGGATGTTACACTTCTTA  1050
      |||||||||| ||||||||||||||||| ||||||||| |||||||||||
seq2  CCTTGGTCAC-TTCCCTCTGCAAATAGTTTATAGGATG-TACACTTCTTA  1047

seq1  ATAATCTTGCTTGGCATAAATCATCAGTTTATGGAAGACCTCCTGGTCCC  1100
      |||||||||| |||||||||||||||||||||||||||||| ||||| ||
seq2  ATAATCTTGCCTGGCATAAATCATCAGTTTATGGAAGACCT-CTGGTTCC  1096

seq1  AGGTATTGTTTTTATCTTCCTTTTTATCTTTTCTATCTTTTCTCAATCCT  1150
      ||| | ||  ||||||||||||||   | |||| ||||||   |||||||
seq2  AGGGAATG--TTTATCTTCCTTTTATACCTTTCCATCTTT--CCAATCCT  1142

seq1  AGGTCTTCCTACTCAACACCTTGACATTCTGATGCCTGTATTCTTGCAGT  1200
      ||| |||||||||||||||||      || ||||||   |||||||||||
seq2  AGG-CTTCCTACTCAACACCT----GCTCCGATGCC--GATTCTTGCAGT  1185

seq1  TTCTGGTCAGAG-CATGG---ATACAGAA----CTCTCTATCATAG  1238
      |  ||  ||||| |||||   | ||||||    ||||||||||| |
seq2  TCTTGTCCAGAGACATGGAATACACAGAAACTTCTCTCTATCATTG  1231