BAC Information

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BAC

Clone NameB6Ng01-168C05
Chromosome9 (Build37)X (Build37)
Map Location 96,718,221 - 96,718,640161,102,425 - 161,103,617
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216
Downstream geneAcpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42, Clstn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168C05.bB6Ng01-168C05.g
ACCDH959457DH959458
length9991,176
definitionDH959457|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C05, 5' end.DH959458|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,718,221 - 96,718,640)(161,102,425 - 161,103,617)
sequence
gaattcaattttcgcttttcaacatatgcaataggtgtgccattgtattt
catcatcaccccgagacaccagcactcattaaaaaaggtgcccttttctg
ggattacagttctactgccatgaacctacatcattttataacctagcctt
tcccccttgtttctccaggggtggcatctctgtcctgcgcgttgctaact
ctattacatcttagggctttctattccagctgttagaagcatctaacaat
tctttatattaaattctttctgtttaaattaccaatttagcttctgtctc
tcaactggactctgacatcatacttacagacttctctgtttgttttatgg
attcatgttagtgctaatgcaattggggtttttcctgacatgacctctca
ctttgggtagtattttactttttttccccccatttttattaggtatttag
ctcatttacatttccaatgctataccaaaagtcccccatacccaaccacc
cccactcccctacccacccactccccctttttggccctggcgttcccctg
tactggggcatataaagtttgcatgtccaatgggcctctctttccagtga
tggccgactaggccatcttttgatacatatgcagctagagtcaagagctc
cggggtactggttagttcataatgttgttccacctatagggttgcagatc
cctttagctccttgggtacgttctctagctcctccattgggagccctgtg
atccatccattagctgactgtgagcatccaattctgtgtttgctagcccc
ggcatagtctcacaagagacagctacatctgggtcctttcgataaaatct
tgctagtgtatgcaatggtatcagcgtttggatgctgattatggggtgga
tccctggatatggcagtctctacatggtccatcctttcatctcagctcca
aactttgtctctgtaactccttccatgggtgtttgttcccacttctaag
gaattcactctgtagacttggctggccttgaatgcacagagatccactta
cctctgcctcctgagtgctcagattaacagtgtgtgtaaacacagcctgg
ccataacatttgttttaaaagcacaaattatctggtcatttgattgactc
tttctgaacactagttttctccagtactatcatctgcaagtctcttctaa
ctctgcagtaaactcctggagacctgagttgagggaagtatcctggataa
agcttcaatgggtcacaagatctgcatcttttatgacaggcaatgatacc
agagcataacgtggaaaataattatttgcataaaataaatttatataaat
ctcaacaattttgttttatagattgagtaaggaaatatccttctaggagt
aaaacactaaatatataaattctatatttttagtttagatcttattctga
gttttatatcctgtgcttgggataactggctttcttataagtatctcaaa
aaaatatgtcaaagatgacactaattccatcccacaaaacaaaacactgt
ttttattgttatttacaaagaatgatggcactctacaatgaatgttatta
cttaagtgataaatatggtaaatgccataaattttcccaacagtctccat
caatctacctgtaatacctgtctactatgtcttctcttaatcctcactgc
cgttattttcattcatgctatggtaatacagtcacaggcacataacctct
tcagacatggtatcttatgctgcattattttccttatatgttatccttcc
cttttaatgttcctttgttaatagtgaggcaactttttaagccttcaatt
cagatgtcactatctctgcaatgccctttacctcttttctgtacaagtca
aacgagtttctctttttctctgtcccttggctgcatgtttttacttctct
ctcttctccgtttattatatgcacattctaatgtagtcattcatttaaat
acttttatttcattaaattttattctttttttcatttttattagtattag
ctcatttacatttccaatgcttaccagagtcccccataccactcccccct
attcccttacccacccactcccctttttggccctgggtttcctgattggg
caataagtttgcgagtcagggcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96718221_96718640
seq2: B6Ng01-168C05.b_454_878 (reverse)

seq1  GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACA  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGG-CTAGCAAACA  49

seq1  CAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAA  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAA  99

seq1  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTA  150
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  TGGAGGAGCTAGAGAACGTACCCAAGGAGCTAAAGGGATCTGCAACCCTA  149

seq1  TAGGTGGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCT  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCT  199

seq1  AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA  249

seq1  GGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAG  300
      ||||||||||||| ||| ||||| | |||||| |||||||||||||||||
seq2  GGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAG  299

seq1  GGCCAAAGGGGGGAAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAG  350
      |||||||  |||| ||||||||||||||||||||||||||| |||||| |
seq2  GGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGTTGGGTATG  349

seq1  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATA  399

seq1  AAAAATGG----AAAAAA--AAAATA  420
      ||||  ||    ||||||  ||||||
seq2  AAAATGGGGGGAAAAAAAGTAAAATA  425

seq1: chrX_161102425_161103617
seq2: B6Ng01-168C05.g_67_1242

seq1  GAATTCACTCTGTAGACTTGGCTGGCCTTGAATGCACAGAGATCCACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACTTGGCTGGCCTTGAATGCACAGAGATCCACTTA  50

seq1  CCTCTGCCTCCTGAGTGCTCAGATTAACAGTGTGTGTAAACACAGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCTGAGTGCTCAGATTAACAGTGTGTGTAAACACAGCCTGG  100

seq1  CCATAACATTTGTTTTAAAAGCACAAATTATCTGGTCATTTGATTGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACATTTGTTTTAAAAGCACAAATTATCTGGTCATTTGATTGACTC  150

seq1  TTTCTGAACACTAGTTTTCTCCAGTACTATCATCTGCAAGTCTCTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAACACTAGTTTTCTCCAGTACTATCATCTGCAAGTCTCTTCTAA  200

seq1  CTCTGCAGTAAACTCCTGGAGACCTGAGTTGAGGGAAGTATCCTGGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGTAAACTCCTGGAGACCTGAGTTGAGGGAAGTATCCTGGATAA  250

seq1  AGCTTCAATGGGTCACAAGATCTGCATCTTTTATGACAGGCAATGATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAATGGGTCACAAGATCTGCATCTTTTATGACAGGCAATGATACC  300

seq1  AGAGCATAACGTGGAAAATAATTATTTGCATAAAATAAATTTATATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAACGTGGAAAATAATTATTTGCATAAAATAAATTTATATAAAT  350

seq1  CTCAACAATTTTGTTTTATAGATTGAGTAAGGAAATATCCTTCTAGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAATTTTGTTTTATAGATTGAGTAAGGAAATATCCTTCTAGGAGT  400

seq1  AAAACACTAAATATATAAATTCTATATTTTTAGTTTAGATCTTATTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTAAATATATAAATTCTATATTTTTAGTTTAGATCTTATTCTGA  450

seq1  GTTTTATATCCTGTGCTTGGGATAACTGGCTTTCTTATAAGTATCTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATATCCTGTGCTTGGGATAACTGGCTTTCTTATAAGTATCTCAAA  500

seq1  AAAATATGTCAAAGATGACACTAATTCCATCCCACAAAACAAAACACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTCAAAGATGACACTAATTCCATCCCACAAAACAAAACACTGT  550

seq1  TTTTATTGTTATTTACAAAGAATGATGGCACTCTACAATGAATGTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGTTATTTACAAAGAATGATGGCACTCTACAATGAATGTTATTA  600

seq1  CTTAAGTGATAAATATGGTAAATGCCATAAATTTTCCCAACAGTCTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTGATAAATATGGTAAATGCCATAAATTTTCCCAACAGTCTCCAT  650

seq1  CAATCTACCTGTAATACCTGTCTACTATGTCTTCTCTTAATCCTCACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTACCTGTAATACCTGTCTACTATGTCTTCTCTTAATCCTCACTGC  700

seq1  CGTTATTTTCATTCATGCTATGGTAATACAGTCACAGGCACATAACCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTTTCATTCATGCTATGGTAATACAGTCACAGGCACATAACCTCT  750

seq1  TCAGACATGGTATCTTATGCTGCATTATTTTCCTTATATGTTATCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATGGTATCTTATGCTGCATTATTTTCCTTATATGTTATCCTTCC  800

seq1  CTTTTAATGTTCC-TTGTTAATAGTGAGGCAACTTTTTAAGCCTTCAATT  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATGTTCCTTTGTTAATAGTGAGGCAACTTTTTAAGCCTTCAATT  850

seq1  CAGATGTCACTATCTCTGCAATGCCCTTTACCTCTTTTCTGTACAAGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCACTATCTCTGCAATGCCCTTTACCTCTTTTCTGTACAAGTCA  900

seq1  AACGAGTTTCTCTTTTTCTCTGTCCCTTGGCTGCATGTTTTTACTTCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGTTTCTCTTTTTCTCTGTCCCTTGGCTGCATGTTTTTACTTCTCT  950

seq1  CTCTTCTCCGTTTATTATATGCAACATTCTAATGTAGTCATTCATTTAAA  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTTCTCCGTTTATTATATGC-ACATTCTAATGTAGTCATTCATTTAAA  999

seq1  TACTTTTTATTTCATTAAATTTTATTCTTTTTTTCCATTTTTATTAGGTA  1049
      ||| |||||||||||||||||||||||||||||| ||||||||||| |||
seq2  TAC-TTTTATTTCATTAAATTTTATTCTTTTTTT-CATTTTTATTA-GTA  1046

seq1  TTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCAC  1099
       ||||||||||||||||||||||||| |||| | ||||||||||| ||||
seq2  -TTAGCTCATTTACATTTCCAATGCT-TACC-AGAGTCCCCCATA-CCAC  1092

seq1  CCACCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTC  1149
       | |||| | |||| |||||||||||| |||||||||||||||||  |||
seq2  TCCCCCCTATTCCCTTACCCACCCACT-CCCCTTTTTGGCCCTGGGTTTC  1141

seq1  CCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCT  1193
      |    |  | ||||| || ||||||||| |||    ||||||||
seq2  C----TGATTGGGCA-AT-AAGTTTGCGAGTC---AGGGCCTCT  1176