BAC Information

Click to search

BAC

Clone NameB6Ng01-168E14
ChromosomeX (Build37)
Map Location 36,459,082 - 36,621,725
singlet/doubletdoublet
Overlap geneLOC100039700
Upstream geneRhox12, 1700123J19Rik, Zbtb33, 6430550H21Rik, EG665331, Atp1b4, Gm40, EG227112, Lamp2, LOC100040971, EG665352, LOC670495, Cul4b, Mcts1, C1galt1c1, EG665369, 6030498E09Rik, LOC547171, LOC670539
Downstream gene1700085A12Rik, LOC100039715, EG636756, EG636766, EG245391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168E14.bB6Ng01-168E14.g
ACCDH959563DH959564
length1,0991,178
definitionDH959563|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E14, 5' end.DH959564|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,459,082 - 36,460,186)(36,620,554 - 36,621,725)
sequence
gaattctcttatcatgctgtcttgattatgctagtccatgtgaggcttac
attttgctttgtcagttaatgaactggcattttggtgtctgtctcagtct
gcagagcttaattagtgtgcatgcattgctgagatgtggatttgctgttg
gtgagctgataatatccggtttcagaggttacaaggcatagagccaaacc
cagcaccatggtaagttatgcaaagtaatgagcacctttctgtgaaacct
tgtgggagccagcatgtggcctttatcccctaatggtatgctatatagca
gagactaagtgtgtttttattttattaaacaatagagattctaacagtct
attagccatgcttcctctatcttggctacctagcatgtgttcaggctcca
tcatggccctgtggtaaaatgtatttaagttttttttttcagttttaaaa
ttctgtattagaaaactagcaaattaccagtactgttaaattggcctgaa
catttccttgaaattttcagagcattatcacacatgtagatggtcccaaa
tgatgttttgtctgtcattattttattgtgtgaacctcacaaaatctgta
tcatgttcttgtcttagttacatgatactacatcctgacaaaggccattt
ataggagaaaatatttggggcttacagtgcagagggttaaagtccatagt
gtcaggtatgatggcaggaacagccaagaggttacattctgatccacaag
taggagttgtgtgggtgggagagtagaaatggcacaactcttttgaaatc
ctaaagcctacaactagtgacagcctcctccagcaagaccacatttcctg
attcttctaccatctgaggaccaagtattcaatatatgagcctccaggac
ccttttaattcaaacaaccatgctatgtgtttttctctgacatgtctctt
ctcactctatgttcagaaattgtgcatatgttgcttttatgtatacttaa
atcattttttatgtgatatattcttttactatggctatagcacagttgtt
tactttattgctgaacatttagaataattgcaaggaatacattagatat
gaattcttaaaaatcaataataaaaacatttattcaaaaatggtcaaaag
acagggatttttgaaataagatatgaaaataatcaggagtacatgactgt
actcttgtgaagtattaaatgaaataatgggccgcatgtaagaaatttag
tgatatatatgggacttgttaagtcctctaaaagataaataaactagagg
aatgtagtttattaatgtaagcaacaatgcattcattaattacacagcaa
atggatgttgtgttagcacgaaacttttgatgaaagattatataagcaac
tatctggaaaattttactataaagagcaaatagatactccagatctgtag
actataaagcctctattgcagctaattggctctatgactatagcataaaa
acagccattaataaataaactataatatataaaaggtacttctgagaatt
cacacagagatattagcttttccatttataaatgaaatattttggggtaa
attcaaatataattttttattattataagtgcttctctttagaataacaa
acctatctttcttaaaacatatagttaactttgaatccagaatgcactca
ttatttattccttttaaacacatgaagtgatactaatgcttatagggcaa
agagaatgtcaacacctatatctagatcatttggtttcagctgagtgaga
tttttccaagaccttcgttcctattaatatttactttcatcttactgtac
atctaccacagaaattaatatctctaaatgcattaaattgttctgaattt
cagaatcctttattaagtatcttttcttactgtaatacaatggctaaaat
atagtaaacttaatatgatttagttatttttctttcatcagctcattcat
atttaatagagacataacacaaacatgaattctgaatttcctcataaaag
cagcttgccttgggccttatatttaccacaactactaaaatgtatgtcac
cacaaagaaaagtcttttttacaaaaattttaaagaattacaacacagaa
tttccccctaaaaccaacatggtgaaataaatctttcatcaagtcatatt
cttggttcatattctctgactgtatttgtaagccacaaatgttttctatg
tctgaatctatttttattttcaggaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_36459082_36460186
seq2: B6Ng01-168E14.b_47_1145

seq1  GAATTCTCTTATCATGCTGTCTTGATTATGCTAGTCCATGTGAGGCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTATCATGCTGTCTTGATTATGCTAGTCCATGTGAGGCTTAC  50

seq1  ATTTTGCTTTGTCAGTTAATGAACTGGCATTTTGGTGTCTGTCTCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTTGTCAGTTAATGAACTGGCATTTTGGTGTCTGTCTCAGTCT  100

seq1  GCAGAGCTTAATTAGTGTGCATGCATTGCTGAGATGTGGATTTGCTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTTAATTAGTGTGCATGCATTGCTGAGATGTGGATTTGCTGTTG  150

seq1  GTGAGCTGATAATATCCGGTTTCAGAGGTTACAAGGCATAGAGCCAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGATAATATCCGGTTTCAGAGGTTACAAGGCATAGAGCCAAACC  200

seq1  CAGCACCATGGTAAGTTATGCAAAGTAATGAGCACCTTTCTGTGAAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCATGGTAAGTTATGCAAAGTAATGAGCACCTTTCTGTGAAACCT  250

seq1  TGTGGGAGCCAGCATGTGGCCTTTATCCCCTAATGGTATGCTATATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGCCAGCATGTGGCCTTTATCCCCTAATGGTATGCTATATAGCA  300

seq1  GAGACTAAGTGTGTTTTTATTTTATTAAACAATAGAGATTCTAACAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAAGTGTGTTTTTATTTTATTAAACAATAGAGATTCTAACAGTCT  350

seq1  ATTAGCCATGCTTCCTCTATCTTGGCTACCTAGCATGTGTTCAGGCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCATGCTTCCTCTATCTTGGCTACCTAGCATGTGTTCAGGCTCCA  400

seq1  TCATGGCCCTGTGGTAAAATGTATTTAAGTTTTTTTTTTCAGTTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCCTGTGGTAAAATGTATTTAAGTTTTTTTTTTCAGTTTTAAAA  450

seq1  TTCTGTATTAGAAAACTAGCAAATTACCAGTACTGTTAAATTGGCCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATTAGAAAACTAGCAAATTACCAGTACTGTTAAATTGGCCTGAA  500

seq1  CATTTCCTTGAAATTTTCAGAGCATTATCACACATGTAGATGGTCCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTTGAAATTTTCAGAGCATTATCACACATGTAGATGGTCCCAAA  550

seq1  TGATGTTTTGTCTGTCATTATTTTATTGTGTGAACCTCACAAAATCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTTGTCTGTCATTATTTTATTGTGTGAACCTCACAAAATCTGTA  600

seq1  TCATGTTCTTGTCTTAGTTACATGATACTACATCCTGACAAAGGCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCTTGTCTTAGTTACATGATACTACATCCTGACAAAGGCCATTT  650

seq1  ATAGGAGAAAATATTTGGGGCTTACAGTGCAGAGGGTTAAAGTCCATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGAAAATATTTGGGGCTTACAGTGCAGAGGGTTAAAGTCCATAGT  700

seq1  GTCAGGTATGATGGCAGGAACAGCCAAGAGGTTACATTCTGATCCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTATGATGGCAGGAACAGCCAAGAGGTTACATTCTGATCCACAAG  750

seq1  TAGGAGTTGTGTGGGTGGGAGAGTAGAAATGGCACAACTCTTTTGAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTGTGTGGGTGGGAGAGTAGAAATGGCACAACTCTTTTGAAATC  800

seq1  CTAAAGCCTACAACTAGTGACAAGCCTCCTCCAGCAAGACCACATTTCCT  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTAAAGCCTACAACTAGTGAC-AGCCTCCTCCAGCAAGACCACATTTCCT  849

seq1  GATTCTTCTACCATCTGAGGACCAAGTATTCAATATATGAGCCTCCAAGG  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATTCTTCTACCATCTGAGGACCAAGTATTCAATATATGAGCCTCC-AGG  898

seq1  ACCCTTTTAATTCAAACAACCATGCTATGTGTTTTTCTCTGACATGTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTAATTCAAACAACCATGCTATGTGTTTTTCTCTGACATGTCTC  948

seq1  TTCTCACTCTATGTTCCAGAATTGTGCATATTGTTGCTTTTATGTATACT  1000
      ||||||||||||||||   ||||||||||| |||||||||||||||||||
seq2  TTCTCACTCTATGTTCAGAAATTGTGCATA-TGTTGCTTTTATGTATACT  997

seq1  TAAATCATTTTTTATTGTGAATAATATTTCTTTA-TATGGCTATAGCACA  1049
      |||||||||||||| |||||   |||||  |||| |||||||||||||| 
seq2  TAAATCATTTTTTA-TGTGA--TATATTCTTTTACTATGGCTATAGCAC-  1043

seq1  ATTTGTTTACTCTATTGCTGAACATTTAGAAT-ATTGCAAGGAATACCAT  1098
      | ||||||||| |||||||||||||||||||| ||||||||||||| |||
seq2  AGTTGTTTACTTTATTGCTGAACATTTAGAATAATTGCAAGGAATA-CAT  1092

seq1  TAGAAAT  1105
      |||| ||
seq2  TAGATAT  1099

seq1: chrX_36620554_36621725
seq2: B6Ng01-168E14.g_70_1247 (reverse)

seq1  GATTCCTGAAATATACAATTAGATTCAGAC-CATGAAACATTTTGTGCTT  49
      ||||||||||| ||| || |||||||||||  |  ||||||||   ||||
seq2  GATTCCTGAAA-ATAAAAATAGATTCAGACATAGAAAACATTTGTGGCTT  49

seq1  AC-AATACAGTTCAGAGAATATGAA-CAAG-ATATG-CTTGATGAAGGAT  95
      || ||||||| |||||||||||||| |||| ||||| ||||||||| || 
seq2  ACAAATACAG-TCAGAGAATATGAACCAAGAATATGACTTGATGAAAGA-  97

seq1  TTTATTTCA-CATGTGGTTTTTAGGGGGAAATTCTGTG-TGTGATTCTTT  143
      ||||||||| ||||| | |||||||||||||||||||| ||| |||||||
seq2  TTTATTTCACCATGTTGGTTTTAGGGGGAAATTCTGTGTTGTAATTCTTT  147

seq1  AGAATTTTTGT-AAAAAGACTTTTCTTTGTTGGTGACATACATTTTAGTA  192
      | ||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  AAAATTTTTGTAAAAAAGACTTTTCTTTG-TGGTGACATACATTTTAGTA  196

seq1  GTTGTGGTAAATATA--GGCCAAGGCAAGCTGCTTTTATGAGGAAATTCA  240
      |||||||||||||||  | |||||||||||||||||||||||||||||||
seq2  GTTGTGGTAAATATAAGGCCCAAGGCAAGCTGCTTTTATGAGGAAATTCA  246

seq1  GATTTCATGTTTGTGTTATGTCTCTATTAAATATGAATGAGCTGATGAAA  290
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTGTGTTATGTCTCTATTAAATATGAATGAGCTGATGAAA  296

seq1  GAAAAATAACTAAATCATATTAAGTTTACTATATTTTAGCCATTGTATTA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAACTAAATCATATTAAGTTTACTATATTTTAGCCATTGTATTA  346

seq1  CAGTAAGAAAAGATACTTAATAAAGGATTCTG-AATTCAGAACAATTTAA  389
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGTAAGAAAAGATACTTAATAAAGGATTCTGAAATTCAGAACAATTTAA  396

seq1  TGCATTTTAGAGATATTAATTTCTGTGGTAGATGTACAGTAAGATGAAAG  439
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCA-TTTAGAGATATTAATTTCTGTGGTAGATGTACAGTAAGATGAAAG  445

seq1  TAAATATTAATAGGAACGAAGGTCTTGGAAAAATCTCACTCAGCTGAAAC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAATAGGAACGAAGGTCTTGGAAAAATCTCACTCAGCTGAAAC  495

seq1  CAAATGATCTAGATATAGGTGTTGACATTCTCTTTGCCCTATAAGCATTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATCTAGATATAGGTGTTGACATTCTCTTTGCCCTATAAGCATTA  545

seq1  GTATCACTTCATGTGTTTAAAAGGAATAAATAATGAGTGCATTCTGGATT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTTCATGTGTTTAAAAGGAATAAATAATGAGTGCATTCTGGATT  595

seq1  CAAAGTTAACTATATGTTTTAAGAAAGATAGGTTTGTTATTCTAAAGAGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTAACTATATGTTTTAAGAAAGATAGGTTTGTTATTCTAAAGAGA  645

seq1  AGCACTTATAATAATAAAAAATTATATTTGAATTTACCCCAAAATATTTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTATAATAATAAAAAATTATATTTGAATTTACCCCAAAATATTTC  695

seq1  ATTTATAAATGGAAAAGCTAATATCTCTGTGTGAATTCTCAGAAGTACCT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAATGGAAAAGCTAATATCTCTGTGTGAATTCTCAGAAGTACCT  745

seq1  TTTATATATTATAGTTTATTTATTAATGGCTGTTTTTATGCTATAGTCAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATTATAGTTTATTTATTAATGGCTGTTTTTATGCTATAGTCAT  795

seq1  AGAGCCAATTAGCTGCAATAGAGGCTTTATAGTCTACAGATCTGGAGTAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAATTAGCTGCAATAGAGGCTTTATAGTCTACAGATCTGGAGTAT  845

seq1  CTATTTGCTCTTTATAGTAAAATTTTCCAGATAGTTGCTTATATAATCTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCTCTTTATAGTAAAATTTTCCAGATAGTTGCTTATATAATCTT  895

seq1  TCATCAAAAGTTTCGTGCTAACACAACATCCATTTGCTGTGTAATTAATG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAAAGTTTCGTGCTAACACAACATCCATTTGCTGTGTAATTAATG  945

seq1  AATGCATTGTTGCTTACATTAATAAACTACATTCCTCTAGTTTATTTATC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTGTTGCTTACATTAATAAACTACATTCCTCTAGTTTATTTATC  995

seq1  TTTTAGAGGACTTAACAAGTCCCATATATATCACTAAATTTCTTACATGC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGGACTTAACAAGTCCCATATATATCACTAAATTTCTTACATGC  1045

seq1  GGCCCATTATTTCATTTAATACTTCACAAGAGTACAGTCATGTACTCCTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATTATTTCATTTAATACTTCACAAGAGTACAGTCATGTACTCCTG  1095

seq1  ATTATTTTCATATCTTATTTCAAAAATCCCTGTCTTTTGACCATTTTTGA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCATATCTTATTTCAAAAATCCCTGTCTTTTGACCATTTTTGA  1145

seq1  ATAAATGTTTTTATTATTGATTTTTAAGAATTC  1172
      |||||||||||||||||||||||||||||||||
seq2  ATAAATGTTTTTATTATTGATTTTTAAGAATTC  1178