BAC Information

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BAC

Clone NameB6Ng01-168K16
ChromosomeX (Build37)
Map Location 151,012,111 - 151,178,052
singlet/doubletdoublet
Overlap geneEG434881, LOC100040899, LOC667331
Upstream geneLOC100039998, LOC667241, Kctd12b, 2210013O21Rik, Smt3h1-ps, Spin2, 4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik
Downstream geneLOC100040925, LOC100040937, Magea6, Magea3, LOC626034, Magea8, Magea2, Magea5, Magea1, 1700042B14Rik, LOC245676, Amd-ps1, LOC667369, Sat1, Acot9, LOC667383, Prdx4, LOC667394, Ptchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168K16.bB6Ng01-168K16.g
ACCDH959847DH959848
length1,1981,181
definitionDH959847|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K16, 5' end.DH959848|Mus musculus domesticus DNA, BAC clone: B6Ng01-168K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,176,844 - 151,178,052)(151,012,111 - 151,013,307)
sequence
gaattcagtatgtagacatgtggttgtcagaattaaggtagcatgttact
acttgagaaattatcttgcaagatttttactagtaacaaaagcaagatag
atctgcaagtgtggatgtgaacaaagtaaattgacttctcagaaatcata
agtgaaagctgatgcaggaatgccattacccgtcctagccttgggtaggt
tcctttgacatccatggaggtctgacagagaatgtcatcaggtaaaagag
gtacacctgatggtgagatagacaaggcagaattatttctggagggtttc
cccatagacaattcagtactgcagaatggtgaccatcagggtcctggaat
gttgtaaatgaggctgtagaatcacaaaatgaagtgtttagtaggcaatg
ctagtgtccattctgactatgcagaagtagttttgatgtctgtagaaagg
gatggatcaaaatgatccgggagattcttcccagttatgctcatttaacc
taggactgcacagtgtacagaatatacaggtgagattttgggtgaaagat
taaaaggaaaaacaggtacagttaatgcaggatgagagcttattctccta
atacagacaatgtgcatactttcttggttttcatgtaatcaacaaagaat
tcctttgcaagagatcatagacaggagacacagtgtaggggtgtgagaat
ggtagcagcagtcattgttactaatggtgtcccaatggaaaagaggtttg
atctaagcttgtggcctaggcactgaatggcagagatgaaaagttacatg
tggtctttgagcaatagtgaggtaaagctactctgtgaccacagctaggc
ctggaagtgtaggaatttctcattagtctactgtgctgaataatgggtga
ctcacgaattagttctcggaatgtggatacactggcataggttatttctg
gaactcctcaacagggcagtacagtgaagattttatttcaccagtgtctt
agtcaggtttctattcctgcacaaacatcatgcccagaaacaaggtgggg
aggaaatagtttattggcttacacttccttactgcctgttcatcaccgag
gaacttaggacttggacctcaagcaggttcaggagcatgagctggatgca
aaggccatggaggaaatttcctttactgcttgcttcctggcctgctct
gaattctttgagaaacaaacaaacaaaaaatacataataaccacagggga
atgctccacttattgtagctgattattacataatacttacaagggcactt
taaaatctgcataaaccttgagacaaaagagacaaaagaaaaataataca
catggtatgcccatttaagtcaagcaaaagcatacgtgatttctttaaat
acccaaagatttgaacatgatggaacaataggtatattaattggatcaag
gagaagacattgttataattctctagatattatcctaatagatgtgcatt
tctgtggaataatatgtgtaatatttcattattaaaatccacatgaacat
atacttaaatttctatttataatgagtatcgtataaaatttcatggtagg
atgctgatttcctaaagtttgacatagtgtgttgaattcctatatcatca
aactattataagtatgtaaagaatgaggaataatgaatatgtgcattctg
tatccactttttattcaatatcgcactttgtgaaaactgatttcattgtt
atgcaacatataacggatctagagggtttttgatccaatatcaactttga
ctgacaaaataatactttatattttaatatgaaaaaaacttatttagctt
tgtcaattaaggtctatgagtgtactaaaaggaaagtaagaaaaatcata
ttgagatgacatcctgatgcattctttaagagaaaaggaaaaggaaaaga
acatcagcgattccagaatgtacataacatcattgccattagacatgcag
aaggttgaggattctgtactaggaaatctcatttaaaggagagattaact
gtcaactaaccacaattccaaagtgtcctgtggaatgtgctttctaaaag
ggtcaagagagtaaaagtaccacttgggaaatataataacatgatgggct
tgccattgatggaaattgattgggaatcacatagctcgttcttgtcaagt
ctcatctgagtagcagactacatgaccatatgcttgaggagaaatgaaag
tagatgtagaataattttttgccagacaaatagctagcttcaggatgtgg
ttaatgttcttgtctgaaatcaaggttaattgagatttttgttaaggaca
atatgaagctcttatgtcatacttttacctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_151176844_151178052
seq2: B6Ng01-168K16.b_47_1244 (reverse)

seq1  AGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAA-GAATATCCCT  49
                ||||| ||||  ||||||||| ||||||| |||  | |||
seq2  ---------AGAGCAGGCCA--GGAAGCAAG-CAGTAAAGGAAATTTCCT  38

seq1  CCATGGCCTCTGCAT-CAGCTCATGCTTCCTG-ACCTGCTTGAGTTCC-A  96
      ||||||||| ||||| |||||||||| ||||| ||||||||||| ||| |
seq2  CCATGGCCTTTGCATCCAGCTCATGC-TCCTGAACCTGCTTGAGGTCCAA  87

seq1  GTCCTAAGTTCCTTCGTGATGAACA-GCAGTATGGAAGTGTAAGCCAAAT  145
      |||||||||||||  |||||||||| |||||| ||||||||||||| |||
seq2  GTCCTAAGTTCCTCGGTGATGAACAGGCAGTAAGGAAGTGTAAGCC-AAT  136

seq1  AAACTATTTCCTCCCCACCTTGTTTCTTGGGCATGATGTTTGTGCAGGAA  195
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAACTATTTCCTCCCCACCTTGTTTC-TGGGCATGATGTTTGTGCAGGAA  185

seq1  TAGAAACCCTGACTAAGACACTGGTGAAATAAAATCTTCACTGTACTGCC  245
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAA-CCTGACTAAGACACTGGTGAAATAAAATCTTCACTGTACTGCC  234

seq1  CTGTTGAGGAGTTCCAGAAATAACCTATGCCAGTGTATCCACATTCCGAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGGAGTTCCAGAAATAACCTATGCCAGTGTATCCACATTCCGAG  284

seq1  AACTAATTCCTGAGTCACCCATTATTCAGCACAGTAGACTAATGAGAAAT  345
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTCGTGAGTCACCCATTATTCAGCACAGTAGACTAATGAGAAAT  334

seq1  TCCTACACTTCCAGGCCTAGCTGTGGTCACAGAGTAGCTTTACCTCACTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACACTTCCAGGCCTAGCTGTGGTCACAGAGTAGCTTTACCTCACTA  384

seq1  TTGCTCAAAGACCACATGTAACTTTTCATCTCTGCCATTCAGTGCCTAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAAGACCACATGTAACTTTTCATCTCTGCCATTCAGTGCCTAGG  434

seq1  CCACAAGCTTAGATCAAACCTCTTTTCCATTGGGACACCATTAGTAACAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCTTAGATCAAACCTCTTTTCCATTGGGACACCATTAGTAACAA  484

seq1  TGACTGCTGCTACCATTCTCACACCCCTACACTGTGTCTCCTGTCTATGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTGCTACCATTCTCACACCCCTACACTGTGTCTCCTGTCTATGA  534

seq1  TCTCTTGCAAAGGAATTCTTTGTTGATTACATGAAAACCAAGAAAGTATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCAAAGGAATTCTTTGTTGATTACATGAAAACCAAGAAAGTATG  584

seq1  CACATTGTCTGTATTAGGAGAATAAGCTCTCATCCTGCATTAACTGTACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTCTGTATTAGGAGAATAAGCTCTCATCCTGCATTAACTGTACC  634

seq1  TGTTTTTCCTTTTAATCTTTCACCCAAAATCTCACCTGTATATTCTGTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCCTTTTAATCTTTCACCCAAAATCTCACCTGTATATTCTGTAC  684

seq1  ACTGTGCAGTCCTAGGTTAAATGAGCATAACTGGGAAGAATCTCCCGGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAGTCCTAGGTTAAATGAGCATAACTGGGAAGAATCTCCCGGAT  734

seq1  CATTTTGATCCATCCCTTTCTACAGACATCAAAACTACTTCTGCATAGTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGATCCATCCCTTTCTACAGACATCAAAACTACTTCTGCATAGTC  784

seq1  AGAATGGACACTAGCATTGCCTACTAAACACTTCATTTTGTGATTCTACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGACACTAGCATTGCCTACTAAACACTTCATTTTGTGATTCTACA  834

seq1  GCCTCATTTACAACATTCCAGGACCCTGATGGTCACCATTCTGCAGTACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTTACAACATTCCAGGACCCTGATGGTCACCATTCTGCAGTACT  884

seq1  GAATTGTCTATGGGGAAACCCTCCAGAAATAATTCTGCCTTGTCTATCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTCTATGGGGAAACCCTCCAGAAATAATTCTGCCTTGTCTATCTC  934

seq1  ACCATCAGGTGTACCTCTTTTACCTGATGACATTCTCTGTCAGACCTCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAGGTGTACCTCTTTTACCTGATGACATTCTCTGTCAGACCTCCA  984

seq1  TGGATGTCAAAGGAACCTACCCAAGGCTAGGACGGGTAATGGCATTCCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCAAAGGAACCTACCCAAGGCTAGGACGGGTAATGGCATTCCTG  1034

seq1  CATCAGCTTTCACTTATGATTTCTGAGAAGTCAATTTACTTTGTTCACAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTTTCACTTATGATTTCTGAGAAGTCAATTTACTTTGTTCACAT  1084

seq1  CCACACTTGCAGATCTATCTTGCTTTTGTTACTAGTAAAAATCTTGCAAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTGCAGATCTATCTTGCTTTTGTTACTAGTAAAAATCTTGCAAG  1134

seq1  ATAATTTCTCAAGTAGTAACATGCTACCTTAATTCTGACAACCACATGTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTCAAGTAGTAACATGCTACCTTAATTCTGACAACCACATGTC  1184

seq1  TACATACTGAATTC  1209
      ||||||||||||||
seq2  TACATACTGAATTC  1198

seq1: chrX_151012111_151013307
seq2: B6Ng01-168K16.g_68_1248

seq1  GAATTCTTTGAGAAACAAACAAACAAAAAATACATAATAACCACAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGAAACAAACAAACAAAAAATACATAATAACCACAGGGGA  50

seq1  ATGCTCCACTTATTGTAGCTGATTATTACATAATACTTACAAGGGCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCACTTATTGTAGCTGATTATTACATAATACTTACAAGGGCACTT  100

seq1  TAAAATCTGCATAAACCTTGAGACAAAAGAGACAAAAGAAAAATAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGCATAAACCTTGAGACAAAAGAGACAAAAGAAAAATAATACA  150

seq1  CATGGTATGCCCATTTAAGTCAAGCAAAAGCATACGTGATTTCTTTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATGCCCATTTAAGTCAAGCAAAAGCATACGTGATTTCTTTAAAT  200

seq1  ACCCAAAGATTTGAACATGATGGAACAATAGGTATATTAATTGGATCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGATTTGAACATGATGGAACAATAGGTATATTAATTGGATCAAG  250

seq1  GAGAAGACATTGTTATAATTCTCTAGATATTATCCTAATAGATGTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACATTGTTATAATTCTCTAGATATTATCCTAATAGATGTGCATT  300

seq1  TCTGTGGAATAATATGTGTAATATTTCATTATTAAAATCCACATGAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAATAATATGTGTAATATTTCATTATTAAAATCCACATGAACAT  350

seq1  ATACTTAAATTTCTATTTATAATGAGTATCGTATAAAATTTCATGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAATTTCTATTTATAATGAGTATCGTATAAAATTTCATGGTAGG  400

seq1  ATGCTGATTTCCTAAAGTTTGACATAGTGTGTTGAATTCCTATATCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATTTCCTAAAGTTTGACATAGTGTGTTGAATTCCTATATCATCA  450

seq1  AACTATTATAAGTATGTAAAGAATGAGGAATAATGAATATGTGCATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTATAAGTATGTAAAGAATGAGGAATAATGAATATGTGCATTCTG  500

seq1  TATCCACTTTTTATTCAATATCGCACTTTGTGAAAACTGATTTCATTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACTTTTTATTCAATATCGCACTTTGTGAAAACTGATTTCATTGTT  550

seq1  ATGCAACATATAACGGATCTAGAGGGTTTTTGATCCAATATCAACTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACATATAACGGATCTAGAGGGTTTTTGATCCAATATCAACTTTGA  600

seq1  CTGACAAAATAATACTTTATATTTTAATATGAAAAAAACTTATTTAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAATAATACTTTATATTTTAATATGAAAAAAACTTATTTAGCTT  650

seq1  TGTCAATTAAGGTCTATGAGTGTACTAAAAGGAAAGTAAGAAAAATCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTAAGGTCTATGAGTGTACTAAAAGGAAAGTAAGAAAAATCATA  700

seq1  TTGAGATGACATCCTGATGCATTCTTTAAGAGAAAAGGAAAAGGAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGACATCCTGATGCATTCTTTAAGAGAAAAGGAAAAGGAAAAGA  750

seq1  ACATCAGCGATTCCAGAATGTACATAACATCATTGCCATTAGACATGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCGATTCCAGAATGTACATAACATCATTGCCATTAGACATGCAG  800

seq1  AAGGTTGAGGATTCTGTACTAGGAAATCTCATTTAAAGGAGAGATTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGAGGATTCTGTACTAGGAAATCTCATTTAAAGGAGAGATTAACT  850

seq1  GTCAACTAACCACAATTCCAAAGTGTCCTGTGGAATGTGCTTTCTAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTAACCACAATTCCAAAGTGTCCTGTGGAATGTGCTTTCTAAAAG  900

seq1  GGTCAAGAGAGTAAAAGTACCACTTGGGAAATATAATAAACATGATGGGC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTCAAGAGAGTAAAAGTACCACTTGGGAAATATAAT-AACATGATGGGC  949

seq1  TTGCCATTGATGGAAATTGATTGGGAATCAACATAAGCTCGTTCTTGTCA  1000
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  TTGCCATTGATGGAAATTGATTGGGAATC-ACAT-AGCTCGTTCTTGTCA  997

seq1  AGTCTCATCTGAAGTAGCAGACTACATGACCAATATGCTTTGAAGGAGAA  1050
      ||||||||||| ||||||||||||||||||| ||||||||   |||||||
seq2  AGTCTCATCTG-AGTAGCAGACTACATGACC-ATATGCTT--GAGGAGAA  1043

seq1  ATGAAAGTAGGATGTAGAATAATTTTTTGCCAGACAAATTAGCTAGCTTT  1100
      ||||||||| |||||||||||||||||||||||||||| |||||||||| 
seq2  ATGAAAGTA-GATGTAGAATAATTTTTTGCCAGACAAA-TAGCTAGCTT-  1090

seq1  CCAGGATGTGG-TAATGTTCTTGTCTGAAATCCAAGGGTAGATATGAGAT  1149
       |||||||||| ||||||||||||||||||| ||||| || || ||||||
seq2  -CAGGATGTGGTTAATGTTCTTGTCTGAAAT-CAAGGTTA-AT-TGAGAT  1136

seq1  TTTTGTAAAGAACCAAATAGAAAGCCTTCTTATGTCATAC-TTTACCTT  1197
      |||||| ||| ||  ||||  ||||  ||||||||||||| ||||||||
seq2  TTTTGTTAAGGAC--AATATGAAGC--TCTTATGTCATACTTTTACCTT  1181