BAC Information

Click to search

BAC

Clone NameB6Ng01-168P02
ChromosomeX (Build37)
Map Location 71,081,965 - 71,207,056
singlet/doubletdoublet
Overlap geneL1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1
Upstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4
Downstream geneLOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168P02.bB6Ng01-168P02.g
ACCDH960050DH960051
length1,025987
definitionDH960050|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P02, 5' end.DH960051|Mus musculus domesticus DNA, BAC clone: B6Ng01-168P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,081,965 - 71,082,989)(71,206,084 - 71,207,056)
sequence
gaattccaagacagccagactacataatagagaaatactatctttaaaaa
cagaaaagaaagttgctttctttatgactatgaagacctcccactcctac
ccctcaaagcctctccacaaatactgacgagaaagggagcgggtctctct
ggtcagaaatggggtcagggaaatgaaatttggaagtctgcctaccagta
catcgccttccagaatgagccattattacatttcaaagagtggctctagg
tccccaaggagaggaaatctccctcagtgggaaggtgagtcatagcctct
taaggcattaaaagtgatttacactgactgaaaaggatagagaaaggaat
tcagtaagtgaagggaaaggagaaagagcagcttccccttcttttcaacc
aagatcatttttgtttatttctttgtttacatatatatatatatatatat
atatatatatatatatatatatatatatttaatgtaaatgagtacactgt
agctgtcttcagacacaccaggagagagcatcggatcctattacagatgg
ttgtgacccaccatgtggttgctgggaattgaactcaggacctctgggag
agcagtcagtgctcttaaccactgagccatctcgcaagccctcaactgaa
gtctttaagactctgctttagaatttgtatttgcctttaacaatattctt
cctgggctaaagaggaaaactggctggcttcaaactcagattgacctgcc
tctgctttccccagttgctgggattgaaggtgtgtgccactactgcctta
tatcagttcttccaaatgaatattcagtttttgtgacagccaagtaaagt
tgttttaattacaatctatgttcggccactgtttcatcccatcaatgcta
gtagaaaaaccacttgatctaaaatcatgggtcaactaattatagcagcc
attaattaagtcagcttttaaattcacatacatgaagtacctgctcctag
ggcagggttcaatggatgggcattg
gaattcaggtgagtttcccttcgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgttttgaaacagggtcttttataacccaggct
caccttcaactcctgatcttcctgcttccacctttcaaggcctaggatta
caggtaactggggactggattgaggctgcctcagaggtttcctgttagct
tttcttttgtaatttggatgaaactccttccatggattatttacttgtgc
aaagttgatttacctcagtattggaagctcctacatttcttgattcatgt
ttacactaggagtaaggacataggtcaagagccaacgtttggatgtgtgg
gcacatgcgtgcatgcatgtccacaagcagtacaagctgcatcactccag
cagaaaaatggcagagaggatggggactatagtattgtctttagtgactc
agctaaaccactgaggagtcttaagagctagctggttgttccaggtgcac
ctggggagaccctcctccctaaagcaaggcagggcacagttgttgcctat
atggccttagagttgagaaacaggattttacaaatggtgtctgaggagag
aactttgtcctcgaaatgcatctaaataaagggagcagaaaaaagcaaaa
caagcagtttccctcttttctcagtacattggtctccaaatcaaacatct
atttcttgtagagatacaccttttccccttgcatggacaatatggctgag
aagcagattaacaacttagactggtccacaaaagcctcctgtgtcccctc
cctccataacaacctgacttcccatctacttctttggagggggggctggt
cttgactttgaagcttttcatcacagtagctgcagctctccttcctccag
atccaaggacttgaaagtctttcttacttccttctcaaatctcacctgga
cttgaacatgcagcagtctgccttctgggccctggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71081965_71082989
seq2: B6Ng01-168P02.b_49_1073

seq1  GAATTCCAAGACAGCCAGACTACATAATAGAGAAATACTATCTTTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACAGCCAGACTACATAATAGAGAAATACTATCTTTAAAAA  50

seq1  CAGAAAAGAAAGTTGCTTTCTTTATGACTATGAAGACCTCCCACTCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGAAAGTTGCTTTCTTTATGACTATGAAGACCTCCCACTCCTAC  100

seq1  CCCTCAAAGCCTCTCCACAAATACTGACGAGAAAGGGAGCGGGTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAGCCTCTCCACAAATACTGACGAGAAAGGGAGCGGGTCTCTCT  150

seq1  GGTCAGAAATGGGGTCAGGGAAATGAAATTTGGAAGTCTGCCTACCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAATGGGGTCAGGGAAATGAAATTTGGAAGTCTGCCTACCAGTA  200

seq1  CATCGCCTTCCAGAATGAGCCATTATTACATTTCAAAGAGTGGCTCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCCTTCCAGAATGAGCCATTATTACATTTCAAAGAGTGGCTCTAGG  250

seq1  TCCCCAAGGAGAGGAAATCTCCCTCAGTGGGAAGGTGAGTCATAGCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGGAGAGGAAATCTCCCTCAGTGGGAAGGTGAGTCATAGCCTCT  300

seq1  TAAGGCATTAAAAGTGATTTACACTGACTGAAAAGGATAGAGAAAGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCATTAAAAGTGATTTACACTGACTGAAAAGGATAGAGAAAGGAAT  350

seq1  TCAGTAAGTGAAGGGAAAGGAGAAAGAGCAGCTTCCCCTTCTTTTCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGTGAAGGGAAAGGAGAAAGAGCAGCTTCCCCTTCTTTTCAACC  400

seq1  AAGATCATTTTTGTTTATTTCTTTGTTTACATATATATATATATATATAT  450
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AAGATCATTTTTGTTTATTTCTTTGTTTAC--ATATATATATATATATAT  448

seq1  ATATATATATATATATATATATATATATATTTAATGTATATGAGTACACT  500
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATATATATATATATATATATATATATATATTTAATGTAAATGAGTACACT  498

seq1  GTAGCTGTCTTCAGACACACCAGGAGAGAGCATCGGATCCTATTACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTCTTCAGACACACCAGGAGAGAGCATCGGATCCTATTACAGAT  548

seq1  GGTTGTGACCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGACCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGG  598

seq1  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCGCAAGCCCTCAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCGCAAGCCCTCAACTG  648

seq1  AAGTCTTTAAGACTCTGCTTTAGAATTTGTATTTGCCTTTAACAATATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTAAGACTCTGCTTTAGAATTTGTATTTGCCTTTAACAATATTC  698

seq1  TTCCTGGGCTAAAGAGGAAAACTGGCTGGCTTCAAACTCAGATTGACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGCTAAAGAGGAAAACTGGCTGGCTTCAAACTCAGATTGACCTG  748

seq1  CCTCTGC-TTCCCCAG-TGCTGGGATTGAAGGTGTGTGCCACTACTGCCT  798
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTTCCCCAGTTGCTGGGATTGAAGGTGTGTGCCACTACTGCCT  798

seq1  TATATCAGTTCTTCCAAATGAATATTCAG-TTTTGTGACAGCCAAGTAAA  847
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATATCAGTTCTTCCAAATGAATATTCAGTTTTTGTGACAGCCAAGTAAA  848

seq1  GCTGTTTGAATAACAATCTATGTCCTGCCACTG-TTCATCCCACAAATGC  896
      | ||||| ||| ||||||||||| | ||||||| |||||||||  |||||
seq2  GTTGTTTTAATTACAATCTATGTTCGGCCACTGTTTCATCCCATCAATGC  898

seq1  CAGTAGAAAAACCAC-TGATCCAAAATCATGGTCAAACTAAATTATAGCA  945
       |||||||||||||| ||||| ||||||||||   |||| ||||||||| 
seq2  TAGTAGAAAAACCACTTGATCTAAAATCATGGGTCAACT-AATTATAGC-  946

seq1  AGCAATTAATTAAGTCAAGCTTTTAAATTCACATACATGAAGTACCTGCT  995
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCCATTAATTAAGTC-AGCTTTTAAATTCACATACATGAAGTACCTGCT  995

seq1  CCTAAGGCAGGGTTCAATAGATTGGCATTG  1025
      |||| ||||||||||||| ||| |||||||
seq2  CCTAGGGCAGGGTTCAATGGATGGGCATTG  1025

seq1: chrX_71206084_71207056
seq2: B6Ng01-168P02.g_68_1054 (reverse)

seq1  GACCAGGGCCCAG-AGGCAGACCTGCTGCATGT--CAGT-CAGGTGAGAT  46
      ||||||||||||| ||||||| |||||||||||   ||| ||||||||||
seq2  GACCAGGGCCCAGAAGGCAGA-CTGCTGCATGTTCAAGTCCAGGTGAGAT  49

seq1  CTGAGAAGGAAGTAGGAAGGA-TTTCAAGTCC-TGGATCTGGA-GAAGGA  93
       ||||||||||||| ||| || |||||||||| |||||||||| ||||||
seq2  TTGAGAAGGAAGTAAGAAAGACTTTCAAGTCCTTGGATCTGGAGGAAGGA  99

seq1  G-GCTGCAGCTACTGTGAGGAAAGGCTTCAAAGTCAAGACCAG-CCCCCC  141
      | |||||||||||||||| |||| ||||||||||||||||||| ||||||
seq2  GAGCTGCAGCTACTGTGATGAAAAGCTTCAAAGTCAAGACCAGCCCCCCC  149

seq1  TCC-AAGAAGTAGATGGGAAGTCAGGTTGTTTTGGA-GGAGGGGACACAG  189
      ||| ||||||||||||||||||||||||||| |||| |||||||||||||
seq2  TCCAAAGAAGTAGATGGGAAGTCAGGTTGTTATGGAGGGAGGGGACACAG  199

seq1  GAGGCTTTTGTGGACCAGTCTAAGTTGTTAATCTGCTTCTCAGCCATATT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTTGTGGACCAGTCTAAGTTGTTAATCTGCTTCTCAGCCATATT  249

seq1  GTCCATGC-AGGGGAAAAGGTGTATCTCTACAAGAAATAGATGTTTGATT  288
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGCAAGGGGAAAAGGTGTATCTCTACAAGAAATAGATGTTTGATT  299

seq1  TGGAGACCAATGTACTGAG-AAAGAGGGAAACTGCTTGTTTTGC-TTTTT  336
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TGGAGACCAATGTACTGAGAAAAGAGGGAAACTGCTTGTTTTGCTTTTTT  349

seq1  CTGCTCCCTTTATTTAGATGCA-TTCGAGGACAAAGTTCTCTCCTCAGAC  385
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGCTCCCTTTATTTAGATGCATTTCGAGGACAAAGTTCTCTCCTCAGAC  399

seq1  ACCATTTGTAAAATCCTGTTTCTCAACTCTAAGGCCATATAGGCAACAAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGTAAAATCCTGTTTCTCAACTCTAAGGCCATATAGGCAACAAC  449

seq1  TGTGCCCTGCCTTGCTTTAGGGAGGAGGGTCTCCCCAGGTGCACCTGGAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTGCCTTGCTTTAGGGAGGAGGGTCTCCCCAGGTGCACCTGGAA  499

seq1  CAACCAGCTAGCTCTTAAGACTCCTCAGTGGTTTAGCTGAGTCACTAAAG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCTAGCTCTTAAGACTCCTCAGTGGTTTAGCTGAGTCACTAAAG  549

seq1  ACAATACTATAGTCCCCATCCTCTCTGCCATTTTTCTGCTGGAGTGATGC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTATAGTCCCCATCCTCTCTGCCATTTTTCTGCTGGAGTGATGC  599

seq1  AGCTTGTACTGCTTGTGGACATGCATGCACGCATGTGCCCACACATCCAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTACTGCTTGTGGACATGCATGCACGCATGTGCCCACACATCCAA  649

seq1  ACGTTGGCTCTTGACCTATGTCCTTACTCCTAGTGTAAACATGAATCAAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGGCTCTTGACCTATGTCCTTACTCCTAGTGTAAACATGAATCAAG  699

seq1  AAATGTAGGAGCTTCCAATACTGAGGTAAATCAACTTTGCACAAGTAAAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGGAGCTTCCAATACTGAGGTAAATCAACTTTGCACAAGTAAAT  749

seq1  AATCCATGGAAGGAGTTTCATCCAAATTACAAAAGAAAAGCTAACAGGAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGGAAGGAGTTTCATCCAAATTACAAAAGAAAAGCTAACAGGAA  799

seq1  ACCTCTGAGGCAGCCTCAATCCAGTCCCCAGTTACCTGTAATCCTAGGCC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGGCAGCCTCAATCCAGTCCCCAGTTACCTGTAATCCTAGGCC  849

seq1  TTGAAAGGTGGAAGCAGGAAGATCAGGAGTTGAAGGTGAGCCTGGGTTAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGTGGAAGCAGGAAGATCAGGAGTTGAAGGTGAGCCTGGGTTAT  899

seq1  AAAAGACCCTGTTTCAAAACACACACACACACACACACACACACACACAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCCTGTTTCAAAACACACACACACACACACACACACACACACAC  949

seq1  ACACACACACACACACGAAGGGAAACTCACCTGAATTC  973
      ||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACGAAGGGAAACTCACCTGAATTC  987