BAC Information

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BAC

Clone NameB6Ng01-169I19
ChromosomeX (Build37)
Map Location 131,887,393 - 132,100,421
singlet/doubletdoublet
Overlap geneEG331529, EG621380, EG666040, EG666045, AV320801, EG621467
Upstream geneCenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941, Armcx1, LOC100040933, LOC100040520, Armcx6, Armcx3, Armcx2, LOC637800, LOC100040987, Nxf2, B930008K04Rik, EG621246, LOC100040635, Tceal6, EG621322, Pramel3, EG621352
Downstream geneNxf7, 4930534P07Rik, 1700008I05Rik, 1700129I15Rik, Gprasp1, Gprasp2, Bhlhb9, LOC100041110, 2900062L11Rik, 6530401D17Rik, Bex2, Nxf3, Bex4, Tceal8, Tceal5, Bex1, LOC100040972, Wbp5, Ngfrap1, LOC666180, LOC237048, LOC666196, Kir3dl2, LOC100041079, Kir3dl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169I19.bB6Ng01-169I19.g
ACCDH960499DH960500
length1,1301,054
definitionDH960499|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I19, 5' end.DH960500|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,099,277 - 132,100,421)(131,887,393 - 131,888,474)
sequence
gaattctttaccaggtattccacttagctactgctgtagatttaacatag
tctagtcatatgagagtgtctcattttggaagtacccagattagattgtc
ctgtagccatgtctgtgagaaatgatcttgattactgattggtgtggcag
atcctgtccactattaaaggtttcatcagcagcaggtgggtctgtgttgc
atcaaacacagcagctggagcagcaatctgcaagctggtgagcagtatta
tccatactgtctgcttaacttcctacctcctgccttgagacctgccttga
cctccctccatgaggacttgtgtcctgggcctataggatgaaatggacat
tttcctccccaggctagctttggtcagtgtctcctcacagcaccaaaaag
ccaactagaacactggagaaggccctcttcaagattatcgggaacagttc
tctaggcagaagggacattgaatagaaacttagatctcaacaaggaaatg
attcatgggaaatggaatagaagaagttaaaagaaaataacacagtaact
taactgtgctgaaggcttgttaaaacataaagagaaagcaatggtgactc
gctctgtttgtacctatgacagctgttcttctcgcagctcatcttttcca
gagagtctaagtggggtgttcaggttcagtgaggagactcagctagaaga
gcaggcaaacagtcattacttgggtaactcaggaggtgtggccttgtggc
aggaagtgtgtctccttgtaggcgggctttgaggtttcctagtgctcagg
ttccactcagtgttgagtgacagccccctcctggctgcctgcagaagaca
atctcccgctgctgctttcagaatgtggcataagagtcccagggcacaga
tgaagtcacccagaaatgcagacttcagggcccagcagcttgtgcagtgc
aggactccagtgatgaatacgtataacacgaagcctaccgatattaatta
aatgtatctcctagaatctccaatactatgatggaaccctggccatttaa
tggattaattctagattaattaatttatttgctaggtgtttggctcacta
gcacgtatgtaccatcaccccgtccttgcc
gaattcagtttgcatatccttgacttacttagaaatgatgtatgccacat
cagtaattagcaatttacacagggctaaggaaatgccttttttatccagt
tgcctcccacacaagcacaccagtgcatacgtgtaaaaagatgagcacca
aagtcactccaggacttaaaggaggaatgaagagtcttagttacatgacc
agacagtctaacaaattagtggattctgggttcaatgaaagatcctgcct
cagaaaacatgtttaaaagtggtttaagaaaataccagatagcaatgccc
tgctcccacatgcatatacagaagcatatgtatcttccccctcacatgaa
catggaatcaaagagattttacttgtatcgttaatttcttgagacaacag
actgcattgcaaaggcatgctaaagataaaaaatagcacttgtccctttc
acatattgaaatgccaaaatgactacatttaaagtactgagtaacaaaga
gaacagaagtaacaacttatacacaatgtttttctgctgaaatatcctag
taaaagcaatcacttatatcttttttttttttttttactttttaaagtaa
aatcatactcagttgtagtctgaccatactcaaaaagcaatacaattttg
ttttagtagtaatactggcagataagtcaaactatattttaagggcttaa
cacaataagaaatctgtcaaggcagttaacatgttttattaattttcctt
tggtggaaagagattgtatttatacattagtaaggaaaacatgttaaatt
atgctataatttatgtgtcatatctcccttgtgatacaacatttaatttt
gttcatattttttgtaatgcttgcattatgagatagtgcaccaactttaa
atatccattaaaatgccattgtatgatcatttcccttacttgtttcattt
aaattacaggtttgggactttctataataaatgtgttatttgaatacata
tctgttcttgactttgtttttcgttacttttcccatctgaccttatttat
attc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_132099277_132100421
seq2: B6Ng01-169I19.b_45_1174 (reverse)

seq1  GGCAAGGACAGGGGTGACATGGTACATAAACATGCATGT-AGGCAAACAC  49
      ||||||||| ||||||  |||||||||  || |||  || || |||||||
seq2  GGCAAGGAC-GGGGTG--ATGGTACAT--ACGTGCTAGTGAGCCAAACAC  45

seq1  CTATGCAAATAAAATAAATAAATCTAGAA-TAATGCACTAAAATGGCCAG  98
      ||| |||||| |||| ||| ||||||||| |||| || | ||||||||||
seq2  CTA-GCAAAT-AAATTAATTAATCTAGAATTAATCCA-TTAAATGGCCAG  92

seq1  GGTGTACATACATTAGTGATTTTGGAGATTTCTA-GAGATACATTTAATT  147
      ||| | ||| || |||   | ||||||| ||||| |||||||||||||||
seq2  GGT-TCCAT-CA-TAG---TATTGGAGA-TTCTAGGAGATACATTTAATT  135

seq1  AATATCGTTAGGGCTCGTGTTATACGTATTCATTCACTGGAGTCCTGCAC  197
      ||||||| ||||  |||||||||||||||||| |||||||||||||||| 
seq2  AATATCGGTAGGCTTCGTGTTATACGTATTCA-TCACTGGAGTCCTGCA-  183

seq1  CTGCACAAGCCTGCTGGGCCCTGAAGTCTGCATTTCTGGGTGACTTCATC  247
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAG-CTGCTGGGCCCTGAAGTCTGCATTTCTGGGTGACTTCATC  232

seq1  TGTGCCCTGGGACTCTTATGCCACATTCTGAAAGCAGCAGCGGGAGATTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTGGGACTCTTATGCCACATTCTGAAAGCAGCAGCGGGAGATTG  282

seq1  TCTTCTGCAGGCAGCCAGGAGGGGGCTGTCACTCAACACTGAGTGGAACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCAGGCAGCCAGGAGGGGGCTGTCACTCAACACTGAGTGGAACC  332

seq1  TGAGCACTAGGAAACCTCAAAGCCCGCCTACAAGGAGACACACTTCCTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACTAGGAAACCTCAAAGCCCGCCTACAAGGAGACACACTTCCTGC  382

seq1  CACAAGGCCACACCTCCTGAGTTACCCAAGTAATGACTGTTTGCCTGCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCCACACCTCCTGAGTTACCCAAGTAATGACTGTTTGCCTGCTC  432

seq1  TTCTAGCTGAGTCTCCTCACTGAACCTGAACACCCCACTTAGACTCTCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTGAGTCTCCTCACTGAACCTGAACACCCCACTTAGACTCTCTG  482

seq1  GAAAAGATGAGCTGCGAGAAGAACAGCTGTCATAGGTACAAACAGAGCGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATGAGCTGCGAGAAGAACAGCTGTCATAGGTACAAACAGAGCGA  532

seq1  GTCACCATTGCTTTCTCTTTATGTTTTAACAAGCCTTCAGCACAGTTAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATTGCTTTCTCTTTATGTTTTAACAAGCCTTCAGCACAGTTAAG  582

seq1  TTACTGTGTTATTTTCTTTTAACTTCTTCTATTCCATTTCCCATGAATCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTTATTTTCTTTTAACTTCTTCTATTCCATTTCCCATGAATCA  632

seq1  TTTCCTTGTTGAGATCTAAGTTTCTATTCAATGTCCCTTCTGCCTAGAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTTGAGATCTAAGTTTCTATTCAATGTCCCTTCTGCCTAGAGA  682

seq1  ACTGTTCCCGATAATCTTGAAGAGGGCCTTCTCCAGTGTTCTAGTTGGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCCGATAATCTTGAAGAGGGCCTTCTCCAGTGTTCTAGTTGGCT  732

seq1  TTTTGGTGCTGTGAGGAGACACTGACCAAAGCTAGCCTGGGGAGGAAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGCTGTGAGGAGACACTGACCAAAGCTAGCCTGGGGAGGAAAAT  782

seq1  GTCCATTTCATCCTATAGGCCCAGGACACAAGTCCTCATGGAGGGAGGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTCATCCTATAGGCCCAGGACACAAGTCCTCATGGAGGGAGGTC  832

seq1  AAGGCAGGTCTCAAGGCAGGAGGTAGGAAGTTAAGCAGACAGTATGGATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGTCTCAAGGCAGGAGGTAGGAAGTTAAGCAGACAGTATGGATA  882

seq1  ATACTGCTCACCAGCTTGCAGATTGCTGCTCCAGCTGCTGTGTTTGATGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTCACCAGCTTGCAGATTGCTGCTCCAGCTGCTGTGTTTGATGC  932

seq1  AACACAGACCCACCTGCTGCTGATGAAACCTTTAATAGTGGACAGGATCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGACCCACCTGCTGCTGATGAAACCTTTAATAGTGGACAGGATCT  982

seq1  GCCACACCAATCAGTAATCAAGATCATTTCTCACAGACATGGCTACAGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCAATCAGTAATCAAGATCATTTCTCACAGACATGGCTACAGGA  1032

seq1  CAATCTAATCTGGGTACTTCCAAAATGAGACACTCTCATATGACTAGACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAATCTGGGTACTTCCAAAATGAGACACTCTCATATGACTAGACT  1082

seq1  ATGTTAAATCTACAGCAGTAGCTAAGTGGAATACCTGGTAAAGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAATCTACAGCAGTAGCTAAGTGGAATACCTGGTAAAGAATTC  1130

seq1: chrX_131887393_131888474
seq2: B6Ng01-169I19.g_67_1120

seq1  GAATTCAGTTTGCATATCCTTGACTTACTTAGAAATGATGTATGCCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGCATATCCTTGACTTACTTAGAAATGATGTATGCCACAT  50

seq1  CAGTAATTAGCAATTTACACAGGGCTAAGGAAATGCCTTTTTTATCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTAGCAATTTACACAGGGCTAAGGAAATGCCTTTTTTATCCAGT  100

seq1  TGCCTCCCACACAAGCACACCAGTGCATACGTGTAAAAAGATGAGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCACACAAGCACACCAGTGCATACGTGTAAAAAGATGAGCACCA  150

seq1  AAGTCACTCCAGGACTTAAAGGAGGAATGAAGAGTCTTAGTTACATGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTCCAGGACTTAAAGGAGGAATGAAGAGTCTTAGTTACATGACC  200

seq1  AGACAGTCTAACAAATTAGTGGATTCTGGGTTCAATGAAAGATCCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCTAACAAATTAGTGGATTCTGGGTTCAATGAAAGATCCTGCCT  250

seq1  CAGAAAACATGTTTAAAAGTGGTTTAAGAAAATACCAGATAGCAATGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACATGTTTAAAAGTGGTTTAAGAAAATACCAGATAGCAATGCCC  300

seq1  TGCTCCCACATGCATATACAGAAGCATATGTATCTTCCCCCTCACATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCACATGCATATACAGAAGCATATGTATCTTCCCCCTCACATGAA  350

seq1  CATGGAATCAAAGAGATTTTACTTGTATCGTTAATTTCTTGAGACAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATCAAAGAGATTTTACTTGTATCGTTAATTTCTTGAGACAACAG  400

seq1  ACTGCATTGCAAAGGCATGCTAAAGATAAAAAATAGCACTTGTCCCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATTGCAAAGGCATGCTAAAGATAAAAAATAGCACTTGTCCCTTTC  450

seq1  ACATATTGAAATGCCAAAATGACTACATTTAAAGTACTGAGTAACAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGAAATGCCAAAATGACTACATTTAAAGTACTGAGTAACAAAGA  500

seq1  GAACAGAAGTAACAACTTATACACAATGTTTTTCTGCTGAAATATCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAGTAACAACTTATACACAATGTTTTTCTGCTGAAATATCCTAG  550

seq1  TAAAAGCAATCACTTATATCTTTTTTTTTTTTTTTTACTTTTTAAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAATCACTTATATCTTTTTTTTTTTTTTTTACTTTTTAAAGTAA  600

seq1  AATCATACTCAGTTGTAGTCTGACCATACTCAAAAAGCAATACAATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATACTCAGTTGTAGTCTGACCATACTCAAAAAGCAATACAATTTTG  650

seq1  TTTTAGTAGTAATACTGGCAGATAAGTCAAACTATATTTTAAGGGCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTAGTAATACTGGCAGATAAGTCAAACTATATTTTAAGGGCTTAA  700

seq1  CACAATAAGAAATCTGTCAAGGCAGTTAACATGTTTTATTAATTTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAGAAATCTGTCAAGGCAGTTAACATGTTTTATTAATTTTCCTT  750

seq1  TGGTGGAAAGAGATTGTATTTATACATTAGTAAGGAAAACATGTTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAAGAGATTGTATTTATACATTAGTAAGGAAAACATGTTAAATT  800

seq1  ATGCTATAATTTATGTGTCATATCTCCCTTGTGATACAACATTTAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATAATTTATGTGTCATATCTCCCTTGTGATACAACATTTAATTTT  850

seq1  GTTCATATTTTTTGTAATGCTTGCATTATGAGATAGTGCACCAAACTTTA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTCATATTTTTTGTAATGCTTGCATTATGAGATAGTGCACC-AACTTTA  899

seq1  AATATCCATTAAAATGCCATTGTAATGATCAATTTCCCTTACCTTGTTTC  950
      ||||||||||||||||||||||| |||||| |||||||||| ||||||||
seq2  AATATCCATTAAAATGCCATTGT-ATGATC-ATTTCCCTTA-CTTGTTTC  946

seq1  CAATTTTAAAATTACAGGGTTTTGGAACTTTCTATTAAATAAAATGTTGT  1000
        ||||  ||||||||||  ||||| |||||||||  ||| ||||| |||
seq2  --ATTT--AAATTACAGG--TTTGGGACTTTCTAT--AAT-AAATG-TGT  986

seq1  TATTTGAAATTAACATTATCTGTTTCTTTGAACTTTTGTTTTTCGTTTTT  1050
      ||||||||    ||| ||||||||   ||||   |||||||||||   ||
seq2  TATTTGAA---TACA-TATCTGTT--CTTGA--CTTTGTTTTTCG---TT  1025

seq1  ACTTTTCCCCATCTGACTCTTATTATATATTC  1082
      |||||| |||||||||| |||||| |||||||
seq2  ACTTTT-CCCATCTGAC-CTTATT-TATATTC  1054