BAC Information

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BAC

Clone NameB6Ng01-170N23
ChromosomeX (Build37)5 (Build37)
Map Location 162,608,244 - 162,609,18095,182,134 - 95,182,616
singlet/doubletsingletsinglet
Overlap geneGemin8
Upstream geneGlra2, LOC100040753
Downstream geneGpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170N23.bB6Ng01-170N23.g
ACCDH961477DH961478
length915761
definitionDH961477|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N23, 5' end.DH961478|Mus musculus domesticus DNA, BAC clone: B6Ng01-170N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(162,608,244 - 162,609,180)(95,182,134 - 95,182,616)
sequence
cttcctgtgccgcccttgactctgtgtagccactgacacgacgttacgtc
acggataaggcgggacttccgtctttcaagccccgtaccggaagcgagct
ccttgttgcccaggcaacccgagcctcccgctctccttgtgtcactcccc
cacttctcccgccccttcctcctccccaccaccagagctaggtccgttgt
tgcccaccgcccgagatctgccagctgcgtgcccacgaggtgacttcggg
ggctgatgggttgcttttggggagtaagggaatagcgtggcggactcctg
aagcttggagtactggcttggcgctcatgctgtggctttaattaccatca
cccggcagcacgaggaggttgcctagacccgtgagagtcccaacccctga
cagactgttaaaactagttctaatttatgctctcaagccctatgtgcttc
ctaatccttgggtgcctgctgagaattctgttcccaggcccccacctcag
actattccagttcagatcttgagaagtgaggctcaagcatgggaaggttt
ggggtttttgtttgttttgttttgttttaactcacagtgtaattcaaacg
tgctgtggatcacaatgttgcaggaagtctgtcaggacacgtttctgcag
agatgtctaagctactggctcattttacaaaaacaaaacaacaaaaacct
gagtttctcccccgcccccctttgcactttttgagttctgtaggtcagaa
ttcttagttgatgttatcttaagaacattttgacagttgctgtgggtagc
cagagttctgaaccatttttccctttttttttctgaatgatgtacaaact
cgttgcacaaattaggctctgactccactgttgtggggtttttatttgct
tgggggggggttgtt
gaattcaatggaggctcaagttggaaaaccatggatacagatcaacaccc
tggtccttggggacaaatcaggtttgctctccatatagctatgaacaaag
agtgtttttttgtttttgtttttcacaagttcaatgccagcttgggctat
ttctttagtctgtgtttattccatccttaagtgagcccaatcttgtctaa
atggggcaggtggagggaggcttgaagaatacattgtgacatttggaaag
catatgaaattcaaacttctgtgtctgtaaataaagctttattagcacat
ggccacccacgttcatttccatatcatctaaggttatagtcaagttccta
aggcagagctgagtgagtagttggccacagataattacatcagacccttt
acaggaaaagccttcagagctccactggagaagaaaggtggttcacatat
tttaccatggagaacactgtctaggggctaaagagctcagtcacgaaagt
gcttgctgctcacccatgagaactcgagctagatcctcagagcccatgga
aaattggaggttttataatttcagtgctgtgggggtagagatagacccct
ggggcttgctggctagccagtatagcctacaaggagagttccaggctgat
tgaaacaccccttttcaaataacaagatagacggtacctgaggaatgaaa
gctgagattattctctggcctctacaagtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_162608244_162609180
seq2: B6Ng01-170N23.b_53_967

seq1  CTTCCTGTGCCGCCCTTGACTCTGTGTAGCCACTGACACGACGTTACGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTGCCGCCCTTGACTCTGTGTAGCCACTGACACGACGTTACGTC  50

seq1  ACGGATAAGGCGGGACTTCCGTCTTTCAAGCCCCGTACCGGAAGCGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATAAGGCGGGACTTCCGTCTTTCAAGCCCCGTACCGGAAGCGAGCT  100

seq1  CCTTGTTGCCCAGGCAACCCGAGCCTCCCGCTCTCCTTGTGTCACTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGCCCAGGCAACCCGAGCCTCCCGCTCTCCTTGTGTCACTCCCC  150

seq1  CACTTCTCCCGCCCCTTCCTCCTCCCCACCACCAGAGCTAGGTCCGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCCCGCCCCTTCCTCCTCCCCACCACCAGAGCTAGGTCCGTTGT  200

seq1  TGCCCACCGCCCGAGATCTGCCAGCTGCGTGCCCACGAGGTGACTTCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCGCCCGAGATCTGCCAGCTGCGTGCCCACGAGGTGACTTCGGG  250

seq1  GGCTGATGGGTTGCTTTTGGGGAGTAAGGGAATAGCGTGGCGGACTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATGGGTTGCTTTTGGGGAGTAAGGGAATAGCGTGGCGGACTCCTG  300

seq1  AAGCTTGGAGTACTGGCTTGGCGCTCATGCTGTGGCTTTAATTACCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGGAGTACTGGCTTGGCGCTCATGCTGTGGCTTTAATTACCATCA  350

seq1  CCCGGCAGCACGAGGAGGTTGCCTAGACCCGTGAGAGTCCCAACCCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCAGCACGAGGAGGTTGCCTAGACCCGTGAGAGTCCCAACCCCTGA  400

seq1  CAGACTGTTAAAACTAGTTCTAATTTATGCTCTCAAGCCCTATGTGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTTAAAACTAGTTCTAATTTATGCTCTCAAGCCCTATGTGCTTC  450

seq1  CTAATCCTTGGGTGCCTGCTGAGAATTCTGTTCCCAGGCCCCCACCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTTGGGTGCCTGCTGAGAATTCTGTTCCCAGGCCCCCACCTCAG  500

seq1  ACTATTCCAGTTCAGATCTTGAGAAGTGAGGCTCAAGCATGGGAAGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCCAGTTCAGATCTTGAGAAGTGAGGCTCAAGCATGGGAAGGTTT  550

seq1  GGGGTTTTTGTTTGTTTTGTTTTGTTTTAACTCACAGTGTAATTCAAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTTGTTTGTTTTGTTTTGTTTTAACTCACAGTGTAATTCAAACG  600

seq1  TGCTGTGGATCACAATGTTGCAGGAAGTCTGTCAGGACACGTTTCTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGATCACAATGTTGCAGGAAGTCTGTCAGGACACGTTTCTGCAG  650

seq1  AGATGTCTAAGCTACTGGCTCA-TTTACAAAAACAAAACAACAAAAACCT  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATGTCTAAGCTACTGGCTCATTTTACAAAAACAAAACAACAAAAACCT  700

seq1  GAGTTTCTCCCCCGCCCCCC-TTGCAACTTTTGAGTTCTGTAGGTCAGAA  748
      |||||||||||||||||||| |||||  ||||||||||||||||||||||
seq2  GAGTTTCTCCCCCGCCCCCCTTTGCACTTTTTGAGTTCTGTAGGTCAGAA  750

seq1  TTCTTAGTTGATGTTATCTTAAGAACA-TTTGACAGTTGCTGTGGGTAGC  797
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTTAGTTGATGTTATCTTAAGAACATTTTGACAGTTGCTGTGGGTAGC  800

seq1  CAGAGTTCTGAACCA-TTTTCCCTTTTTTTTTCTGAAATGATTGTTACAA  846
      ||||||||||||||| ||||||||||||||||||| ||||||   |||||
seq2  CAGAGTTCTGAACCATTTTTCCCTTTTTTTTTCTG-AATGAT--GTACAA  847

seq1  ACTCGTTGCACAAATTAGGCTCTGGACTCCACTGTTGTTGGGGTTTTTAT  896
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  ACTCGTTGCACAAATTAGGCTCT-GACTCCACTGTTG-TGGGGTTTTTAT  895

seq1  TTGCTT-GGGGGGGGTTGTTTGTTGGTTTTTGTTTTGTTGTT  937
      |||||| |||||||||||||                      
seq2  TTGCTTGGGGGGGGGTTGTT----------------------  915

seq1: chr5_95182134_95182616
seq2: B6Ng01-170N23.g_576_828 (reverse)

seq1  ATACACACACACACACACACACACACACACACACACACACACGCACAGAG  50
              | ||||||||||||||||||||||||||||||||    ||||
seq2  --------ATACACACACACACACACACACACACACACACACTTGTAGAG  42

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCACAAACACAATT  100
                             |  ||||| | || | ||       ||
seq2  -----------------------GCCAGAGA-ATAATCTCA-----GCTT  63

seq1  ACACATACACATGTGAACATACGAGTATGGGTATAGATGCCTATTATATA  150
       ||  | | || ||  ||   ||  |||           | | |||| | 
seq2  TCA-TTCCTCAGGT--AC---CGTCTAT-----------CTTGTTATTTG  96

seq1  AATACAACCTGCTGAGTCTTATATGTGTGTTTTGGT-AAACTGAAACATG  199
      |                   | | | ||||||   | |  ||| |||   
seq2  A-------------------AAAGGGGTGTTTCAATCAGCCTGGAAC---  124

seq1  GTCTCCTATAATCCAGACTACCCCAGAAAGATATATGTATCTTAGATGTG  249
       ||||||    |  || |||  |  |  ||  |                 
seq2  -TCTCCT----TGTAGGCTATACTGGCTAGCCA-----------------  152

seq1  TGTGAGCAGCAGAGACCTTCTGCCTCTACCTCCTAAG---TGGTGGGACA  296
       |  |||  ||| |    |||  ||||||| ||  ||   ||     | |
seq2  -GCAAGCCCCAGGG---GTCTATCTCTACCCCCACAGCACTGAAATTATA  198

seq1  CAAAGTCCAA-TCACTGTGGTCTCTTAACAGAGTGTGGTGATGGAGAATG  345
       ||  ||||| |  |  ||| ||||     |||  |   | | |||  | 
seq2  AAACCTCCAATTTTCCATGGGCTCT-----GAGGATCTAGCTCGAG--TT  241

seq1  CTCAAAGCATGCTAGGCAAGTCTTCCAGAAACTCACTAAATCTCTAGTAT  395
      ||||        | ||  ||                              
seq2  CTCA--------TGGGTGAG------------------------------  253

seq1  CTACCTTTAAACTTTTCTTTCATTTACTTTTTGTTAATATTCAGGTAACA  445
                                                        
seq2  --------------------------------------------------  253

seq1  TAGACTCATTAAAGAAAAATGAAGTTCTCATGGGTGAG  483
                                            
seq2  --------------------------------------  253