BAC Information

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BAC

Clone NameB6Ng01-173K06
ChromosomeX (Build37)
Map Location 142,354,164 - 142,355,272
singlet/doubletsinglet
Overlap genenone
Upstream geneZcchc16, LOC623591, Lhfpl1, Amot, EG434860, LOC100039313, LOC623697
Downstream geneLOC623731, LOC237096, LOC100039558, EG666730
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173K06.bB6Ng01-173K06.g
ACCGA001933GA001934
length1,2441,115
definitionB6Ng01-173K06.b B6Ng01-173K06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggca
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaagcagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaaatagaccaatggaatagaattgaaga
tccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaagtggtgctgg
cacaactggttgttattcgtgtagaagaatgtgaatcgatccatacttat
ctcttgtactaaggtcaaatctaagtggatcaagggacttcacataaaac
cagagaacactgaaacttatagagagagtgggaaaagcctttgaagattg
ggcacagggtaaaattctgaacagaacaagcaatgccttgtgctgtagat
tcgagattcggacaatggacctatgaacttcaaggttctgtcaaggctaa
agaaaaccggtctataggatcaagaagaactcacagctcactcg

gaattctggacatgacacaattattgaacccacaaactcactgcagctat
atttatgtgcacaagtcctgcacaagacccagccaacaagatcagtgaac
atcccagcaggcagctctatgcagactaatgaggtataaagaaaagaaaa
cagaaaaatttagagaacatgaagcaggaatgggaatgtatcctgagaga
gtagaagtgagttaaggataggtatgatcaagatacagtgtatacaagta
tgaagaataaataagtgttataaaataaaatatctgaaaatctattaagt
attttatatcatatggaagtcaatttttccctaaaagtagaatagggaat
cctatgtttttggaaggtgcagcaaagtcaatgtaaaagggtagttacat
ttgttcagtgtatgctatctgcatgtatggaaatatcacactgtggctca
ttaatcagtgcaattaacttatatcatctgttctaataaaataaaatgaa
acactgtgcaatgatccaccaaaaccaaactgcacactttaaaggtaaat
gtagactgaaagattacatgcttttaacctcaaacattttaccctttgaa
actgaaaaaatataaaattccaatgtaatacacagtgcatagttttgtgt
ctttatgacttgtatggcaagactttcagggttgcatattgtcttcaaat
atgtaattctttactaaaatcctaggacaacaatatatgttggggcaaga
tttaaaagccataagttttggtactgacagacatggattgtattttacac
aataccacttctatcacttcatataaattacttaaactctgaagtttaag
ttcatttgttgttatacaaaatgaaattgattcattgctatggttgtggt
aaagattcttgtaagaatagatataaattccccatgacaaaatttgcttt
ctcttttggtggtctatagggttatattaatgagcctcttccttcaccaa
gctggccacttacatagattatttttcactgtgggtcctatattcactaa
agatagaaaaacagtgaaaacagtattgtatgggccttgttttctgtcac
agaagaccatctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_142354164_142355272
seq2: B6Ng01-173K06.g_64_1178 (reverse)

seq1  AAGAGA---TCTCTTGTGACAGAAAACAAAGCCCATAC-ATACTGTTTTC  46
      ||||||   |||  ||||||||||||||| |||||||| |||||||||||
seq2  AAGAGATGGTCTTCTGTGACAGAAAACAAGGCCCATACAATACTGTTTTC  50

seq1  ACTGTTTTTCCTATCTTTAGTGAATATAGGACCCACAGTGAAAAATAATC  96
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTT-CTATCTTTAGTGAATATAGGACCCACAGTGAAAAATAATC  99

seq1  TATTGTAAGT-GCCAGCTT-GTGAAGGAAGA-GCTCATTAATATAA-CCT  142
      || ||||||| |||||||| ||||||||||| |||||||||||||| |||
seq2  TA-TGTAAGTGGCCAGCTTGGTGAAGGAAGAGGCTCATTAATATAACCCT  148

seq1  ATAGACCACCAAAAGAGAAAGCAAATTTTGTCATGGGGAATTTATATCTA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCACCAAAAGAGAAAGCAAATTTTGTCATGGGGAATTTATATCTA  198

seq1  TTCTTACAAGAATCTTTACCACAACCATAGCAATGAATCAATTTCATTTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACAAGAATCTTTACCACAACCATAGCAATGAATCAATTTCATTTT  248

seq1  GTATAACAACAAATGAACTTAAACTTCAGAGTTTAAGTAATTTATATGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACAACAAATGAACTTAAACTTCAGAGTTTAAGTAATTTATATGAA  298

seq1  GTGATAGAAGTGGTATTGTGTAAAATACAATCCATGTCTGTCAGTACCAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGAAGTGGTATTGTGTAAAATACAATCCATGTCTGTCAGTACCAA  348

seq1  AACTTATGGCTTTTAAATCTTGCCCCAACATATATTGTTGTCCTAGGATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGGCTTTTAAATCTTGCCCCAACATATATTGTTGTCCTAGGATT  398

seq1  TTAGTAAAGAATTACATATTTGAAGACAATATGCAACCCTGAAAGTCTTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAAGAATTACATATTTGAAGACAATATGCAACCCTGAAAGTCTTG  448

seq1  CCATACAAGTCATAAAGACACAAAACTATGCACTGTGTATTACATTGGAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAAGTCATAAAGACACAAAACTATGCACTGTGTATTACATTGGAA  498

seq1  TTTTATATTTTTTCAGTTTCAAAGGGTAAAATGTTTGAGGTTAAAAGCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTTTTTCAGTTTCAAAGGGTAAAATGTTTGAGGTTAAAAGCAT  548

seq1  GTAATCTTTCAGTCTACATTTACCTTTAAAGTGTGCAGTTTGGTTTTGGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTTTCAGTCTACATTTACCTTTAAAGTGTGCAGTTTGGTTTTGGT  598

seq1  GGATCATTGCACAGTGTTTCATTTTATTTTATTAGAACAGATGATATAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTGCACAGTGTTTCATTTTATTTTATTAGAACAGATGATATAAG  648

seq1  TTAATTGCACTGATTAATGAGCCACAGTGTGATATTTCCATACATGCAGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGCACTGATTAATGAGCCACAGTGTGATATTTCCATACATGCAGA  698

seq1  TAGCATACACTGAACAAATGTAACTACCCTTTTACATTGACTTTGCTGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATACACTGAACAAATGTAACTACCCTTTTACATTGACTTTGCTGCA  748

seq1  CCTTCCAAAAACATAGGATTCCCTATTCTACTTTTAGGGAAAAATTGACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAAAACATAGGATTCCCTATTCTACTTTTAGGGAAAAATTGACT  798

seq1  TCCATATGATATAAAATACTTAATAGATTTTCAGATATTTTATTTTATAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATGATATAAAATACTTAATAGATTTTCAGATATTTTATTTTATAA  848

seq1  CACTTATTTATTCTTCATACTTGTATACACTGTATCTTGATCATACCTAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTTATTCTTCATACTTGTATACACTGTATCTTGATCATACCTAT  898

seq1  CCTTAACTCACTTCTACTCTCTCAGGATACATTCCCATTCCTGCTTCATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAACTCACTTCTACTCTCTCAGGATACATTCCCATTCCTGCTTCATG  948

seq1  TTCTCTAAATTTTTCTGTTTTCTTTTCTTTATACCTCATTAGTCTGCATA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAAATTTTTCTGTTTTCTTTTCTTTATACCTCATTAGTCTGCATA  998

seq1  GAGCTGCCTGCTGGGATGTTCACTGATCTTGTTGGCTGGGTCTTGTGCAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCCTGCTGGGATGTTCACTGATCTTGTTGGCTGGGTCTTGTGCAG  1048

seq1  GACTTGTGCACATAAATATAGCTGCAGTGAGTTTGTGGGTTCAATAATTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGCACATAAATATAGCTGCAGTGAGTTTGTGGGTTCAATAATTG  1098

seq1  TGTCATGTCCAGAATTC  1109
      |||||||||||||||||
seq2  TGTCATGTCCAGAATTC  1115


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