BAC Information

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BAC

Clone NameB6Ng01-173N10
ChromosomeX (Build37)
Map Location 117,246,291 - 117,247,423
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC385417, Pabpc5, LOC236983, LOC674318
Downstream geneEG545741, LOC100039461, Pcdh11x, H2afb3, LOC245576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173N10.bB6Ng01-173N10.g
ACCGA002081GA002082
length1,1271,176
definitionB6Ng01-173N10.b B6Ng01-173N10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttattgaagaattttcacattttactcttatctgcgttggttt
ggggatatataaaaccagaatcaaaataggaggacatactggggtcctca
aaaattcttattctccctagctttttaccttttattgagtcaattgtatc
ctcctttttgttacactttcactagaatattcaatggaatccaaagaaag
ttgattttacacacatagtgttaacacttgattaggtcaaaagagtgtag
aaaaaaattaaataggctttgaaatgatgaaaaaatggtttaattttact
aagatgctcattaagactttggagtagtctaattacttgcgttttttttt
ttctataaaataagcctatttggatattcagtacacaacatatagtacac
cataggcattgaatggcattgattacaattcccataagcagaaaaaaaaa
tgattgtaagcttttgtgataaatgcatggatattaaacaattgctatta
tattttttatctcccacctgtctctctccattgtgtagatatgatactaa
agctaatagagttattttgattaatcattatgaaatagctacttaaagcc
attaatactggtagaaataacaatagcataaactttttcacttttcattt
taagcatgtatgtaataaaatgaagaggttaaaataatttaaatcattaa
aagtagatcagtgttaaacatggccttattttcaaattgtgtttgtttat
ttatttattgtattgaggatctgtgtgtatatgaatagacacaccagaga
acaggtttgaagaagttggttcttttctttcaccatgtggatctcaggga
ttaaattgaggtcatggtggcaagcgctatacccactgagccatctcacc
agccagtcttcaataattctattgcttttattgctctatatatggaggtg
gtatatataaaggcacatattaatgtcagcatattttcagaaatttcctg
tcgccttgctcagtaggtcctggaaaatcagagtcagtttgtgtaacaga
acataaagtgcctttatctgctgagtatctattgtcataattttttaatc
agaacataaagaatttatagtgcattt

gaattctcacctgaggaataccaaatggctgagaacacctgaaaaaattt
tcagcatccttaatcattagggaaatgtaaatcaatagaactctgagatt
ccacctcagaccagtcagaatgtctaagatcaaaaggtcaggtgacagca
gatgttggcgaggatgtaaaaaagtgaaatactcttccactgttggtggg
attgcaagtttgtacaaccactctggaaatcagtctggcagttcctcaga
aaattggacatagtactaccagagaatcacacaatatctccctgggcata
tatctagaagatgttccaactggtaagaaggacacatgctctactatgtc
catagcagccttatttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtatatttatacaatggag
tactactcagctactaaaaacaatgaatttatgaaattcctaggcaaatt
gatggacctggaaggtatcatcctgagtgaggtaacctaatcacaaaaga
actcacatgatatgtactcaatgataagtggatattagcccagaaactta
gaatactccagataaaagatacaatttgcaaaacacgtgaaactcaagaa
gaatgaagaccaaagtgtggacactttgctccttcttagaattgggaaca
aaacacttatggaaggagttacagagaaaaagtttggagttgagacaaaa
ggatggaccatctagagactgccatacccggggatccatcccataatcag
catcaaaacgctgacaccattgcatacaccagcaagattttgctgaaagg
accttgacatagctttctcttgtgaggctatgctggtgtcttgcaaacac
agaagtggatgctcacagtcagctattgaatggaacacagcccccccccc
aatggaagagctatagaatgttacccaggagctaaaggtgtctgcaacct
atagtgagcatattatgaactaacccagtaccctgagcttgtgtctctag
ctgcatatgttatcagaggatgctagtcgcatcatggaagagggctctgt
cttgccaacttttatgctcagtcagacgccaggccagaatggaagttgct
gtcagagagcagcaactgcggtgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_117246291_117247423
seq2: B6Ng01-173N10.b_42_1168

seq1  GAATTCCTTATTGAAGAATTTTCACATTTTACTCTTATCTGCGTTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTGAAGAATTTTCACATTTTACTCTTATCTGCGTTGGTTT  50

seq1  GGGGATATATAAAACCAGAATCAAAATAGGAGGACATACTGGGGTCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATATATAAAACCAGAATCAAAATAGGAGGACATACTGGGGTCCTCA  100

seq1  AAAATTCTTATTCTCCCTAGCTTTTTACCTTTTATTGAGTCAATTGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTATTCTCCCTAGCTTTTTACCTTTTATTGAGTCAATTGTATC  150

seq1  CTCCTTTTTGTTACACTTTCACTAGAATATTCAATGGAATCCAAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTTGTTACACTTTCACTAGAATATTCAATGGAATCCAAAGAAAG  200

seq1  TTGATTTTACACACATAGTGTTAACACTTGATTAGGTCAAAAGAGTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTACACACATAGTGTTAACACTTGATTAGGTCAAAAGAGTGTAG  250

seq1  AAAAAAATTAAATAGGCTTTGAAATGATGAAAAAATGGTTTAATTTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTAAATAGGCTTTGAAATGATGAAAAAATGGTTTAATTTTACT  300

seq1  AAGATGCTCATTAAGACTTTGGAGTAGTCTAATTACTTGCGTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTCATTAAGACTTTGGAGTAGTCTAATTACTTGCGTTTTTTTTT  350

seq1  TTCTATAAAATAAGCCTATTTGGATATTCAGTACACAACATATAGTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAAATAAGCCTATTTGGATATTCAGTACACAACATATAGTACAC  400

seq1  CATAGGCATTGAATGGCATTGATTACAATTCCCATAAGCAGAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCATTGAATGGCATTGATTACAATTCCCATAAGCAGAAAAAAAAA  450

seq1  TGATTGTAAGCTTTTGTGATAAATGCATGGATATTAAACAATTGCTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTAAGCTTTTGTGATAAATGCATGGATATTAAACAATTGCTATTA  500

seq1  TATTTTTTATCTCCCACCTGTCTCTCTCCATTGTGTAGATATGATACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATCTCCCACCTGTCTCTCTCCATTGTGTAGATATGATACTAA  550

seq1  AGCTAATAGAGTTATTTTGATTAATCATTATGAAATAGCTACTTAAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATAGAGTTATTTTGATTAATCATTATGAAATAGCTACTTAAAGCC  600

seq1  ATTAATACTGGTAGAAATAACAATAGCATAAACTTTTTCACTTTTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATACTGGTAGAAATAACAATAGCATAAACTTTTTCACTTTTCATTT  650

seq1  TAAGCATGTATGTAATAAAATGAAGAGGTTAAAATAATTTAAATCATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGTATGTAATAAAATGAAGAGGTTAAAATAATTTAAATCATTAA  700

seq1  AAGTAGATCAGTGTTAAACATGGCCTTATTTTCAAATTGTGTTTGTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATCAGTGTTAAACATGGCCTTATTTTCAAATTGTGTTTGTTTAT  750

seq1  TTATTTATTGTATTGAGGATCTGTGTGTATATGAATAGACACACCAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTGTATTGAGGATCTGTGTGTATATGAATAGACACACCAGAGA  800

seq1  ACAGGTTTGAAGAAGTTGGTTCTTTTCTTTCACCATGTGGATCTCAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTGAAGAAGTTGGTTCTTTTCTTTCACCATGTGGATCTCAGGGA  850

seq1  TTAAATTGAGGTCATGGTGGCAAGCGCTATACCCACTGAGCCATCTCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGAGGTCATGGTGGCAAGCGCTATACCCACTGAGCCATCTCACC  900

seq1  AGCCAGTCTTCAATAATTCTATTGCTTTTATTGCTCTTATATATGGAGGT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCCAGTCTTCAATAATTCTATTGCTTTTATTGCTC-TATATATGGAGGT  949

seq1  GGTATATATAAAGGCACATATTAATGTCAGCATATTTTCAGAAATTTCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATATAAAGGCACATATTAATGTCAGCATATTTTCAGAAATTTCCT  999

seq1  GTCGCCTTGCTCAGGTAGGTCCTGG-AAATCAGAGTCAGTTTGTGTAAAC  1049
      ||||||||||||| ||||||||||| |||||||||||||||||||| |||
seq2  GTCGCCTTGCTCA-GTAGGTCCTGGAAAATCAGAGTCAGTTTGTGT-AAC  1047

seq1  AG-ACATAAAGTGCCTTTATCTGCTGAGTAATCTATTGTCCATTAATTTT  1098
      || |||||||||||||||||||||||||| ||||||||| |||  | |||
seq2  AGAACATAAAGTGCCTTTATCTGCTGAGT-ATCTATTGT-CAT--AATTT  1093

seq1  TTTAATCAGACAATTAAAAGATTTATAGTGCATTT  1133
      |||||||||| |  ||||  |||||||||||||||
seq2  TTTAATCAGA-ACATAAAGAATTTATAGTGCATTT  1127


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