BAC Information

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BAC

Clone NameB6Ng01-176K04
Chromosome1 (Build37)X (Build37)
Map Location 183,920,752 - 183,921,901101,167,001 - 101,167,366
singlet/doubletsingletsinglet
Overlap geneEnah
Upstream geneEphx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384
Downstream geneSrp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176K04.bB6Ng01-176K04.g
ACCGA004123GA004124
length1,138571
definitionB6Ng01-176K04.b B6Ng01-176K04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(183,920,752 - 183,921,901)(101,167,001 - 101,167,366)
sequence
gaattccaggacatccagggctacatagagaaaccctgtctcgaaaaaca
aaaaaaaaaaaaaaaaaaaaaagaaagaaaaagaaaagacaaaacaagac
ttctctaatcattcaaattgagtattccttgctctaggtccacccttttc
ctgctccgtattttatcttcattgcacttactgagaacaacagctttatt
gatatctctttctccagcctctactagaaaaagctctgtgagtgcatgga
cacgttcacctccacactcccaggctgaagaatagtgcttatcagtaata
acacttgttagccaataaatcctactttttagtttgccaattttctataa
tagacatatgatttttttcaccctgtttttaaatacataactaggtgaat
gggcacatagcacatcctgagtcaaagaaaacagagcaaacccatggcat
ggttttcagtcctaacaagaccaaaacctaatcctaactccttcctaata
aattcacatggacccttccttacagcactaccttagagataggaaaaaac
cagcttgccctattcttacagagcacttaaaacgtttctgagcagagaaa
caattagcacagccctaagttcaatttccaacatgctagaagcgagctcc
acttctgacattagattctccaagagacaactgggagtattacacgtact
cgtacctcaggtgacaatcttaacttgtgatgccacccatactcctatag
attattagattactaacaatccccttctgggttttgatttgtaatgtctg
gttcaaagaacccagaaaaacatttatgttcactcattaaatacaaaggt
tattttaaagggcacaagtgaacaggaaaatagagagatccataaggttg
ggtctggaaaggtcctgagtaggagagtatccatatgttcagtgattagg
cattattttcatcctttgagcacttgtgttcatttttacacacccctgga
tccctttcaaatgtgggtcttctgggttttaatgtaagcttcattatgtc
aaatactttcaaatcactagcattctacactcaacgtcagccccttcttc
ttcctcggaagtgtgcatgggctgaacttcaaatgctc
tgtaacttcaagtctcgttcttcttacagaccagtcattgtgctgagcag
aatgttttaaggctaatggagtcaagctggagagatggctcaggggctaa
gagcactggctgctcttccaaaggccctgagttcgattcccagcaaccgc
ttggtggtgaataaccatctataatgagatctggtgcccttctctagcct
gcagtcatatatgctctatacctaataaataaatctttaaaaaaaaaagg
ttaatggggtcaggagcagagacaagaaggcaagtttacaaatacctatg
caagcttgccacagcaagggccagagcatgctgattcctgagagctggca
gaccctggtttcatctgctacttacctttagttctatatctttttttaaa
gatttatttatttatttaatgtatatgtgcacactgtagctgtcttcaga
cacaccagaagagggcatcagatcccattacagatggttgtgagccacca
tgtggttgttggggaattgaactcaggacctctggaagagcagccagtgc
tcttagccgctgagccatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_183920752_183921901
seq2: B6Ng01-176K04.b_42_1179

seq1  GAATTCCAGGACATCCAGGGCTACATAGAGAAACCCTGTCTCGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACATCCAGGGCTACATAGAGAAACCCTGTCTCGAAAAACA  50

seq1  AAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAGACAAAACAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAGACAAAACAAGAC  100

seq1  TTCTCTAATCATTCAAATTGAGTATTCCTTGCTCTAGGTCCACCCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAATCATTCAAATTGAGTATTCCTTGCTCTAGGTCCACCCTTTTC  150

seq1  CTGCTCCGTATTTTATCTTCATTGCACTTACTGAGAACAACAGCTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCGTATTTTATCTTCATTGCACTTACTGAGAACAACAGCTTTATT  200

seq1  GATATCTCTTTCTCCAGCCTCTACTAGAAAAAGCTCTGTGAGTGCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTCTTTCTCCAGCCTCTACTAGAAAAAGCTCTGTGAGTGCATGGA  250

seq1  CACGTTCACCTCCACACTCCCAGGCTGAAGAATAGTGCTTATCAGTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCACCTCCACACTCCCAGGCTGAAGAATAGTGCTTATCAGTAATA  300

seq1  ACACTTGTTAGCCAATAAATCCTACTTTTTAGTTTGCCAATTTTCTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTTAGCCAATAAATCCTACTTTTTAGTTTGCCAATTTTCTATAA  350

seq1  TAGACATATGATTTTTTTCACCCTGTTTTTAAATACATAACTAGGTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATATGATTTTTTTCACCCTGTTTTTAAATACATAACTAGGTGAAT  400

seq1  GGGCACATAGCACATCCTGAGTCAAAGAAAACAGAGCAAACCCATGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATAGCACATCCTGAGTCAAAGAAAACAGAGCAAACCCATGGCAT  450

seq1  GGTTTTCAGTCCTAACAAGACCAAAACCTAATCCTAACTCCTTCCTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAGTCCTAACAAGACCAAAACCTAATCCTAACTCCTTCCTAATA  500

seq1  AATTCACATGGACCCTTCCTTACAGCACTACCTTAGAGATAGGAAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACATGGACCCTTCCTTACAGCACTACCTTAGAGATAGGAAAAAAC  550

seq1  CAGCTTGCCCTATTCTTACAGAGCACTTAAAACGTTTCTGAGCAGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCCCTATTCTTACAGAGCACTTAAAACGTTTCTGAGCAGAGAAA  600

seq1  CAATTAGCACAGCCCTAAGTTCAATTTCCAACATGCTAGAAGCGAGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGCACAGCCCTAAGTTCAATTTCCAACATGCTAGAAGCGAGCTCC  650

seq1  ACTTCTGACATTAGATTCTCCAAGAGACAACTGGGAGTATTACACGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGACATTAGATTCTCCAAGAGACAACTGGGAGTATTACACGTACT  700

seq1  CGTACCTCAGGTGACAATCTTAACTTGTGATGCCACCCATACTCCTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCTCAGGTGACAATCTTAACTTGTGATGCCACCCATACTCCTATAG  750

seq1  ATTATTAGATTACTAACAATCCCCTTCTGGGTTTTGATTTGTAATGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAGATTACTAACAATCCCCTTCTGGGTTTTGATTTGTAATGTCTG  800

seq1  GTTCAAAGAACCCAGAAAAACATTTATGTTCACTCATTAAATACAAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGAACCCAGAAAAACATTTATGTTCACTCATTAAATACAAAGGT  850

seq1  TATTTTAAAGGGCACAAGTGAACAGGAAAATAGAGAGATCCATAAGGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAGGGCACAAGTGAACAGGAAAATAGAGAGATCCATAAGGTTG  900

seq1  GGTCTGGAAAGGTCCTGAGTAGGAGAGTATCCATATGTTCAGTGATTAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGAAAGGTCCTGAGTAGGAGAGTATCCATATGTTCAGTGATTAGG  950

seq1  CATTATTTTCATCCTTTGAGCACTTGTGTTCATTTTTACAACACCCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATTATTTTCATCCTTTGAGCACTTGTGTTCATTTTTAC-ACACCCCTGG  999

seq1  ATCCC-TTCAAATGTGGGTCTTCTGGGTTTTTAATGTAGGCTTCATTATG  1049
      ||||| ||||||||||||||||||||| |||||||||| |||||||||||
seq2  ATCCCTTTCAAATGTGGGTCTTCTGGG-TTTTAATGTAAGCTTCATTATG  1048

seq1  TCAAAATAACTATCCAAATCACTAGCCATTCCTAACCAACTCAACCGTCA  1099
      |||||   ||| | ||||||||||| |||| |||    |||||| |||||
seq2  TCAAA--TACT-TTCAAATCACTAG-CATT-CTA---CACTCAA-CGTCA  1089

seq1  GCCCC-TCCTCCTCTCCAGAAGTGTGCAGTGGGGCTGAAACTTCCAATGC  1148
      ||||| || || ||  | ||||||||||   |||||| |||||| |||||
seq2  GCCCCTTCTTCTTCCTCGGAAGTGTGCA--TGGGCTG-AACTTCAAATGC  1136

seq1  TC  1150
      ||
seq2  TC  1138

seq1: chrX_101167001_101167366
seq2: B6Ng01-176K04.g_459_639 (reverse)

seq1  GAGATGGCTCAATGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAG  50
      |||||||||||  || ||||||||||| ||||||||||||||||||||||
seq2  GAGATGGCTCAGCGGCTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAG  50

seq1  TTCAATT-CCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGAT  99
      ||||||| |||| ||||||||||||||||||||||||||||||||| |||
seq2  TTCAATTCCCCAACAACCACATGGTGGCTCACAACCATCTGTAATGGGAT  100

seq1  CTGATGCCCTCTCCTGGTGTGTCTGAAGACAGCTACAGTGT----ATATA  145
      |||||||||||| ||||||||||||||||||||||||||||    |||||
seq2  CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTGCACATATA  150

seq1  ---TATATATATATAT-AATCTTTAAAAAAAAAGAAGAGGGGCTGGTGAG  191
         || ||| ||| || ||||||||||||||                   
seq2  CATTAAATAAATAAATAAATCTTTAAAAAAA-------------------  181

seq1  ATGGCTCAGTGGGTAAGAGCACCTGACTGTTCTTCCGAAGGTCCAAGGTT  241
                                                        
seq2  --------------------------------------------------  181

seq1  CAAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCT  291
                                                        
seq2  --------------------------------------------------  181

seq1  GATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATA  341
                                                        
seq2  --------------------------------------------------  181

seq1  ATAAATAAATAAATCTTTAAAAAAA  366
                               
seq2  -------------------------  181