BAC Information

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BAC

Clone NameB6Ng01-177C16
ChromosomeX (Build37)
Map Location 147,761,925 - 147,867,108
singlet/doubletdoublet
Overlap geneORF34, LOC623804
Upstream geneLOC333588, Tmem29, LOC100040101, Alas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021, Gnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278
Downstream geneLOC100039760, Phf8, LOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394, Iqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177C16.bB6Ng01-177C16.g
ACCGA004514GA004515
length1,055972
definitionB6Ng01-177C16.b B6Ng01-177C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,866,057 - 147,867,108)(147,761,925 - 147,762,902)
sequence
gaattcttcaaggtttagaataatgaactgtagctactggagttaagtaa
tttactgtttgtattcagagagattttcagattaaaaggaagaagcccta
ctgactacagccagctttcatttgtcaagttcatagctaatggactatag
ttgactatcagggagactctaccttagccagtttgttttgttttgttttt
aagataggttctcactatataactctgtgtggactgggactcattctgta
gaccaagttggcttggaactcagagttccacctgcctctgcttccagatt
gctgggattaaaagcttctgctaccatgcctggcttagacatttggttgg
taatttgtgtgttaagaccagaggaaaggagtaggcatatagaagtatca
gaagagataaggaacagggggaaaagactactccttagatgatgcctcca
gaaccagtctatcacttagtacatcccttcaaagtttataatttatactt
ctctcctagcatctttattcattgcttagtcccaattcctactaacttcc
ccttttctcaggcccttaatacaatgaagggcacaaacatacacgctttc
cttgtacctcttgagaaacattgaccagtgggctggggatatagcttaat
gctacagtgcttgtctggaatgtgcaagaccctaggctcaatctccagga
ctacttcccctgaagaaaaataacaattatcagacttttatctagtagac
ttcataacttactctcagtaactatgagatacagcagagaacaggaaggt
agataggtatatgttctctcaccttagtaagacgtggtaaatatatggaa
aacataagaccccttcggtgtctgtgttcagcaaccctcagacttctgga
gctactggaggtaagggtggaatggtgatattccatgtgtttcctgtaga
acatagataacagaagatgggataatgagttccactttcagctacgtggt
ttccgaaacctcagcatcagcaagctgtcctcaagccctctctgttcacc
attgg
gaattctggagggtagggaaaaagataaaagacttctaccttttcttggc
aaaagtgtgctctaccaaattgctataaggtataaagagatgaagaaaca
ttttccaactctgggagataaaacatttaacaaaaacagtaagccattaa
acgtatgctcattcatgaataaattcttgatgggtttagatggttaggga
gctcaaatgccatcagtttcttcagttatagcgttcatgcagaacgaatt
taaagatgtcagaaatgcaaaaaccagctgtagtctgctcagtgacttaa
tctccttgcagaaataattctggccaagagctggttgtcagtgttttcag
aaaagaaggaaaataataatagagtgtgccctgcaagtagcgattcgaaa
ggaagttggactacttctgaagtacgcaacattttagcaaaataagcaca
gttacaacggagagcctgttgagattccaggcatgttctgtcccaggaac
tcatcagtagcttccatgtaaatgaggcttaatctcaatcattatataac
aatgttttgtgtatgatttaacacagagtaaaccaaatctgtttaatgtc
tttcttttacaaggtaatagacacacacgtttactggaaatgtaattcaa
ttgctagaattcttgcccagcatgcataaagctctaggttcatccccaac
ccctcatatgcctcgcatggtagcacatacctagaatcttattgcccagg
tggatatagaagaatcaaacgtgttttagtcatcccttagctacatagca
gttcaaggtcagcatacctccattgaaagacaaaggagagaagagatgga
gcagacttggactttgcagggcccaactagaaaatcccaaattaatctga
gtcaatagtctgaaaggtgatatggaacatgctgttagcctcacaagttt
gagcaggctaagctgcataatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_147866057_147867108
seq2: B6Ng01-177C16.b_47_1101 (reverse)

seq1  CCAATGGTG-ACAGAG-GGGCTTGGGGACAGCCTGCTGATGCTGGAGTTT  48
      ||||||||| |||||| ||||||| ||||||| |||||||||||  ||||
seq2  CCAATGGTGAACAGAGAGGGCTTGAGGACAGCTTGCTGATGCTGAGGTTT  50

seq1  CGGAAACCACCGTAGCTGAAAGTGAACCTCA-TATCCCATC-TCTGTTAT  96
      ||||||||| |||||||||||||| | |||| ||||||||| ||||||||
seq2  CGGAAACCA-CGTAGCTGAAAGTGGAACTCATTATCCCATCTTCTGTTAT  99

seq1  CTATG-TCTACAAGGAACCACATGG-ATATCACCATTCCACCCTTACCTC  144
      ||||| ||||| ||||| ||||||| ||||||||||||||||||||||||
seq2  CTATGTTCTAC-AGGAAACACATGGAATATCACCATTCCACCCTTACCTC  148

seq1  CAGTAGCTCCAGAAGTCTTGAGGGTTGCTGAACACAGACACCGAAGGGGT  194
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGTAGCTCCAGAAGTC-TGAGGGTTGCTGAACACAGACACCGAAGGGGT  197

seq1  CTTATG-TATCCATATATTTACCACGTCCTTACTAAGGTGAGAGAACATA  243
      |||||| | |||||||||||||||||| ||||||||||||||||||||||
seq2  CTTATGTTTTCCATATATTTACCACGT-CTTACTAAGGTGAGAGAACATA  246

seq1  TACCTATCTACCTTCCTGTTCTCTGCTGTATCTCATAGTTACTGAGAGTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCTACCTTCCTGTTCTCTGCTGTATCTCATAGTTACTGAGAGTA  296

seq1  AGTTATGAAGTCTACTAGATAAAAGTCTGATAATTGTTATTTTTCTTCAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAAGTCTACTAGATAAAAGTCTGATAATTGTTATTTTTCTTCAG  346

seq1  GGGAAGTAGTCCTGGAGATTGAGCCTAGGGTCTTGCACATTCCAGACAAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTAGTCCTGGAGATTGAGCCTAGGGTCTTGCACATTCCAGACAAG  396

seq1  CACTGTAGCATTAAGCTATATCCCCAGCCCACTGGTCAATGTTTCTCAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCATTAAGCTATATCCCCAGCCCACTGGTCAATGTTTCTCAAG  446

seq1  AGGTACAAGGAAAGCGTGTATGTTTGTGCCCTTCATTGTATTAAGGGCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAGGAAAGCGTGTATGTTTGTGCCCTTCATTGTATTAAGGGCCT  496

seq1  GAGAAAAGGGGAAGTTAGTAGGAATTGGGACTAAGCAATGAATAAAGATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGGGGAAGTTAGTAGGAATTGGGACTAAGCAATGAATAAAGATG  546

seq1  CTAGGAGAGAAGTATAAATTATAAACTTTGAAGGGATGTACTAAGTGATA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAGAAGTATAAATTATAAACTTTGAAGGGATGTACTAAGTGATA  596

seq1  GACTGGTTCTGGAGGCATCATCTAAGGAGTAGTCTTTTCCCCCTGTTCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTTCTGGAGGCATCATCTAAGGAGTAGTCTTTTCCCCCTGTTCCT  646

seq1  TATCTCTTCTGATACTTCTATATGCCTACTCCTTTCCTCTGGTCTTAACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTCTGATACTTCTATATGCCTACTCCTTTCCTCTGGTCTTAACA  696

seq1  CACAAATTACCAACCAAATGTCTAAGCCAGGCATGGTAGCAGAAGCTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTACCAACCAAATGTCTAAGCCAGGCATGGTAGCAGAAGCTTTT  746

seq1  AATCCCAGCAATCTGGAAGCAGAGGCAGGTGGAACTCTGAGTTCCAAGCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCAATCTGGAAGCAGAGGCAGGTGGAACTCTGAGTTCCAAGCC  796

seq1  AACTTGGTCTACAGAATGAGTCCCAGTCCACACAGAGTTATATAGTGAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTCTACAGAATGAGTCCCAGTCCACACAGAGTTATATAGTGAGA  846

seq1  ACCTATCTTAAAAACAAAACAAAACAAACTGGCTAAGGTAGAGTCTCCCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCTTAAAAACAAAACAAAACAAACTGGCTAAGGTAGAGTCTCCCT  896

seq1  GATAGTCAACTATAGTCCATTAGCTATGAACTTGACAAATGAAAGCTGGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCAACTATAGTCCATTAGCTATGAACTTGACAAATGAAAGCTGGC  946

seq1  TGTAGTCAGTAGGGCTTCTTCCTTTTAATCTGAAAATCTCTCTGAATACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCAGTAGGGCTTCTTCCTTTTAATCTGAAAATCTCTCTGAATACA  996

seq1  AACAGTAAATTACTTAACTCCAGTAGCTACAGTTCATTATTCTAAACCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAATTACTTAACTCCAGTAGCTACAGTTCATTATTCTAAACCTT  1046

seq1  GAAGAATTC  1052
      |||||||||
seq2  GAAGAATTC  1055

seq1: chrX_147761925_147762902
seq2: B6Ng01-177C16.g_61_1032

seq1  GAATTCTGGAGGGTAGGGAAAAAGATAAAAGACTTCTACCTTTTCTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGGGTAGGGAAAAAGATAAAAGACTTCTACCTTTTCTTGGC  50

seq1  AAAAGTGTGCTCTACCAAATTGCTATAAGGTATAAAGAGATGAAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTGCTCTACCAAATTGCTATAAGGTATAAAGAGATGAAGAAACA  100

seq1  TTTTCCAACTCTGGGAGATAAAACATTTAACAAAAACAGTAAGCCATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAACTCTGGGAGATAAAACATTTAACAAAAACAGTAAGCCATTAA  150

seq1  ACGTATGCTCATTCATGAATAAATTCTTGATGGGTTTAGATGGTTAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATGCTCATTCATGAATAAATTCTTGATGGGTTTAGATGGTTAGGGA  200

seq1  GCTCAAATGCCATCAGTTTCTTCAGTTATAGCGTTCATGCAGAACGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATGCCATCAGTTTCTTCAGTTATAGCGTTCATGCAGAACGAATT  250

seq1  TAAAGATGTCAGAAATGCAAAAACCAGCTGTAGTCTGCTCAGTGACTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTCAGAAATGCAAAAACCAGCTGTAGTCTGCTCAGTGACTTAA  300

seq1  TCTCCTTGCAGAAATAATTCTGGCCAAGAGCTGGTTGTCAGTGTTTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGCAGAAATAATTCTGGCCAAGAGCTGGTTGTCAGTGTTTTCAG  350

seq1  AAAAGAAGGAAAATAATAATAGAGTGTGCCCTGCAAGTAGCGATTCGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGAAAATAATAATAGAGTGTGCCCTGCAAGTAGCGATTCGAAA  400

seq1  GGAAGTTGGACTACTTCTGAAGTACGCAACATTTTAGCAAAATAAGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTGGACTACTTCTGAAGTACGCAACATTTTAGCAAAATAAGCACA  450

seq1  GTTACAACGGAGAGCCTGTTGAGATTCCAGGCATGTTCTGTCCCAGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAACGGAGAGCCTGTTGAGATTCCAGGCATGTTCTGTCCCAGGAAC  500

seq1  TCATCAGTAGCTTCCATGTAAATGAGGCTTAATCTCAATCATTATATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTAGCTTCCATGTAAATGAGGCTTAATCTCAATCATTATATAAC  550

seq1  AATGTTTTGTGTATGATTTAACACAGAGTAAACCAAATCTGTTTAATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTGTGTATGATTTAACACAGAGTAAACCAAATCTGTTTAATGTC  600

seq1  TTTCTTTTACAAGGTAATAGACACACACGTTTACTGGAAATGTAATTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTACAAGGTAATAGACACACACGTTTACTGGAAATGTAATTCAA  650

seq1  TTGCTAGAATTCTTGCCCAGCATGCATAAAGCTCTAGGTTCATCCCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGAATTCTTGCCCAGCATGCATAAAGCTCTAGGTTCATCCCCAAC  700

seq1  CCCTCATATGCCTCGCATGGTAGCACATACCTAGAATCTTATTGCCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATATGCCTCGCATGGTAGCACATACCTAGAATCTTATTGCCCAGG  750

seq1  TGGATATAGAAGAATCAAACGTGTTTTAGGTCAT-CCTTAGCTACATAGC  799
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  TGGATATAGAAGAATCAAACGTGTTTTA-GTCATCCCTTAGCTACATAGC  799

seq1  AGGTTCAAGGTCAGCATACC-CCATTGAAAGACAAAGAGAG-GAAGAGAT  847
      | |||||||||||||||||| |||||||||||||||| ||| ||||||||
seq2  A-GTTCAAGGTCAGCATACCTCCATTGAAAGACAAAG-GAGAGAAGAGAT  847

seq1  -GAGCAGACTTTGGACTTTGCAGGGGCCCAACTAGAAAATCCCAAATTTA  896
       |||||||| |||||||||||| ||||||||||||||||||||||| |||
seq2  GGAGCAGAC-TTGGACTTTGCA-GGGCCCAACTAGAAAATCCCAAA-TTA  894

seq1  ATCTGAGGTTCAATAGTCTGAAA-GTGATATTGAACCATGCCTGTTAG-C  944
      |||||||  |||||||||||||| ||||||| ||| |||| ||||||| |
seq2  ATCTGAG--TCAATAGTCTGAAAGGTGATATGGAA-CATG-CTGTTAGCC  940

seq1  TCACAAGTTTGAGGCCAGCCTAGGCTGCATAATG  978
      |||||||||||||  ||| ||| |||||||||||
seq2  TCACAAGTTTGAG--CAGGCTAAGCTGCATAATG  972