BAC Information

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BAC

Clone NameB6Ng01-177G15
ChromosomeX (Build37)
Map Location 163,461,730 - 163,619,410
singlet/doubletdoublet
Overlap geneLOC667791, EG667794, LOC100040850, LOC627268
Upstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660
Downstream geneTmsb4x, Tlr8, Tlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177G15.bB6Ng01-177G15.g
ACCGA004691GA004692
length6651,093
definitionB6Ng01-177G15.b B6Ng01-177G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,461,730 - 163,462,394)(163,618,323 - 163,619,410)
sequence
gaattcagtgccagacaggttctgttgttgattaaggagagattcatatt
tttttaatcgtcagaaagataggacagaggttaggttatattaggaaatc
taaaataacaaccaagacaggtgtcgggatggatatgcacacggggaaag
caaatcaggagcatgtccattatagtagagttctccagagaaatggccct
agcagaatacaagtccatatggggacactaacttgttcataaaccttgtg
tgtgtatttgtgtgtgtgcgtgcatttgtcttagttaaggttttattggt
gtgaagagatgtcttgatcagggcaactcttataaaaaaaaagcacttaa
ttggggctggcttatattcagagatctagtccattatcatcatagtggga
agcacagcaacaggcaggcctgcacggtgctccagagatagatgagagtt
ctacatctggacccaaaggcagaaagagagagcgaaagtcactaagcctg
gcttgggcttctgaaaccccaaagcccacctccagtgaattcctgcaaaa
ggccacagcacctaatagtgccattccctatgagcctatgggggatactt
ttattccaactaccacagcatgtacatgtgtgtgtgtgagagagagagag
agagagagagagaga
gaattctgatgtcttatacaagatgctgaggggttttctgccaggaggca
caggacttcaagaattcctgaagtggttttatgccgttagctcattgctc
atggtgttctttgtgccaccgtgccaggttcaagaggccacgttcactag
attttgtagggctatccaaaactgatgattttgttaaggttcctgaagtc
catcatgtccactctcaacaatgaatggctcatcaactccatttcttgca
ttatggttcaaactgaaccaaagatcatgtctgctggccaaacctccagg
cagaacaccaaagagttgctcagctcttgtcaggaaaacaactaggaagt
gaatctttgacagcagaagttgcatgtatgctaggcagcctctccagaga
ggaagcctgcttatgtttgtccttcttagtctcggacattatggaagccc
aaagaacccaccacaggggctctgtccagcttgcctttgaaggaaaaacc
aatgtaaaacatctgtaccagctgtggtacattccacatccaagagcccg
atgcaaatttagttttctatttctttgtttttgttgttgttaacccaggt
taactcaaactggcctgaaactcactatatagccaaggatggccttgaac
tcctgatcttcttgattgcgtctcccaagtgctggggtaacagatatgta
ccatggttttttgctttgtttttgatttctgaatactagggctactttaa
gttgtttgcccatgagtagaatccttaaacctctctgaataccttacaga
gaggtttattttagccaaggctatatcatccttttggctatgagagtccc
tgaaaatattggaaaatgattttaaataaaatcccacattattaaatgtt
ccccatgaaaagtgttaataaaacttgtgccttgtgattctattttgaag
aacatgtcagacggcagggccctcctcttgacaaaagcagccaggaaagt
gacttctacctccccccagagacagcattttttaattgtgcctttctgcc
tataagtagaaagcaggtgaaaccttcctgctcttggatgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_163461730_163462394
seq2: B6Ng01-177G15.b_39_703

seq1  GAATTCAGTGCCAGACAGGTTCTGTTGTTGATTAAGGAGAGATTCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCCAGACAGGTTCTGTTGTTGATTAAGGAGAGATTCATATT  50

seq1  TTTTTAATCGTCAGAAAGATAGGACAGAGGTTAGGTTATATTAGGAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATCGTCAGAAAGATAGGACAGAGGTTAGGTTATATTAGGAAATC  100

seq1  TAAAATAACAACCAAGACAGGTGTCGGGATGGATATGCACACGGGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACAACCAAGACAGGTGTCGGGATGGATATGCACACGGGGAAAG  150

seq1  CAAATCAGGAGCATGTCCATTATAGTAGAGTTCTCCAGAGAAATGGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGGAGCATGTCCATTATAGTAGAGTTCTCCAGAGAAATGGCCCT  200

seq1  AGCAGAATACAAGTCCATATGGGGACACTAACTTGTTCATAAACCTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATACAAGTCCATATGGGGACACTAACTTGTTCATAAACCTTGTG  250

seq1  TGTGTATTTGTGTGTGTGCGTGCATTTGTCTTAGTTAAGGTTTTATTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTGTGTGTGTGCGTGCATTTGTCTTAGTTAAGGTTTTATTGGT  300

seq1  GTGAAGAGATGTCTTGATCAGGGCAACTCTTATAAAAAAAAAGCACTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGATGTCTTGATCAGGGCAACTCTTATAAAAAAAAAGCACTTAA  350

seq1  TTGGGGCTGGCTTATATTCAGAGATCTAGTCCATTATCATCATAGTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTGGCTTATATTCAGAGATCTAGTCCATTATCATCATAGTGGGA  400

seq1  AGCACAGCAACAGGCAGGCCTGCACGGTGCTCCAGAGATAGATGAGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCAACAGGCAGGCCTGCACGGTGCTCCAGAGATAGATGAGAGTT  450

seq1  CTACATCTGGACCCAAAGGCAGAAAGAGAGAGCGAAAGTCACTAAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTGGACCCAAAGGCAGAAAGAGAGAGCGAAAGTCACTAAGCCTG  500

seq1  GCTTGGGCTTCTGAAACCCCAAAGCCCACCTCCAGTGAATTCCTGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCTTCTGAAACCCCAAAGCCCACCTCCAGTGAATTCCTGCAAAA  550

seq1  GGCCACAGCACCTAATAGTGCCATTCCCTATGAGCCTATGGGGGATACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGCACCTAATAGTGCCATTCCCTATGAGCCTATGGGGGATACTT  600

seq1  TTATTCCAACTACCACAGCATGTACATGTGTGTGTGTGAGAGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCAACTACCACAGCATGTACATGTGTGTGTGTGAGAGAGAGAGAG  650

seq1  AGAGAGAGAGAGAGA  665
      |||||||||||||||
seq2  AGAGAGAGAGAGAGA  665

seq1: chrX_163618323_163619410
seq2: B6Ng01-177G15.g_65_1157 (reverse)

seq1  CAGCATACAAGAGCAGGGAAGGTTTCACTTCCTTTCTAACCTTTATAGGG  50
      |||||| |||||||| |||||||||||| | |||||||    ||||| ||
seq2  CAGCATCCAAGAGCA-GGAAGGTTTCACCTGCTTTCTA---CTTATA-GG  45

seq1  CAGAAAAGCACAATTTAAAAAATGCTGTCTCTGGGGG--AGTAG-AGTCA  97
      |||||| |||||| |||||||||||||||||||||||   |||| |||||
seq2  CAGAAAGGCACAA-TTAAAAAATGCTGTCTCTGGGGGGAGGTAGAAGTCA  94

seq1  C-TTCCTGGCTGCTTTTGTCAAGAG--AGGCCCTGCCGTCTGACATG-TC  143
      | |||||||||||||||||||||||   ||||||||||||||||||| ||
seq2  CTTTCCTGGCTGCTTTTGTCAAGAGGAGGGCCCTGCCGTCTGACATGTTC  144

seq1  TTC-AAATAGAATCAACAAGCACA--GTTTATT-ACACCTTTCAT-GGGA  188
      ||| |||||||||||  | |||||   |||||| |||| |||||| ||||
seq2  TTCAAAATAGAATCACAAGGCACAAGTTTTATTAACACTTTTCATGGGGA  194

seq1  ACATTTAAATAATGTGGGATTTTATTTAAAATCATTTTCCCAATA-TTTC  237
      |||||| ||||||||||||||||||||||||||||||| |||||| ||||
seq2  ACATTT-AATAATGTGGGATTTTATTTAAAATCATTTT-CCAATATTTTC  242

seq1  AGGGACTCTCATAGCCAAAAGGATGATATAGCCTTGGCTAAAATAAACCT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCTCATAGCCAAAAGGATGATATAGCCTTGGCTAAAATAAACCT  292

seq1  CTCTGTAAGGTATTCAGAGAGGTTTTAAGGATTCTACTCATGGGCAAACA  337
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTGTAAGGTATTCAGAGAGG-TTTAAGGATTCTACTCATGGGCAAACA  341

seq1  ACTT-AAGTAGCCCTAGTATTCAGAAATCAAAAACAAAGCAAAAAACCAT  386
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGTAGCCCTAGTATTCAGAAATCAAAAACAAAGCAAAAAACCAT  391

seq1  GGTACATATCTGTTACCCCAGCACTTGGGAGACGCAATCAAGAAGATCAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATATCTGTTACCCCAGCACTTGGGAGACGCAATCAAGAAGATCAG  441

seq1  GAGTTCAAGGCCATCCTTGGCTATATAGTGAGTTTCAGGCCAGTTTGAGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCATCCTTGGCTATATAGTGAGTTTCAGGCCAGTTTGAGT  491

seq1  TAACCTGGGTTAACAACAACAAAAACAAAGAAATAGAAAACTAAATTTGC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGGTTAACAACAACAAAAACAAAGAAATAGAAAACTAAATTTGC  541

seq1  ATCGGGCTCTTGGATGTGGAATGTACCACAGCTGGTACAGATGTTTTACA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGCTCTTGGATGTGGAATGTACCACAGCTGGTACAGATGTTTTACA  591

seq1  TTGGTTTTTCCTTCAAAGGCAAGCTGGACAGAGCCCCTGTGGTGGGTTCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTCCTTCAAAGGCAAGCTGGACAGAGCCCCTGTGGTGGGTTCT  641

seq1  TTGGGCTTCCATAATGTCCGAGACTAAGAAGGACAAACATAAGCAGGCTT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTCCATAATGTCCGAGACTAAGAAGGACAAACATAAGCAGGCTT  691

seq1  CCTCTCTGGAGAGGCTGCCTAGCATACATGCAACTTCTGCTGTCAAAGAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGGAGAGGCTGCCTAGCATACATGCAACTTCTGCTGTCAAAGAT  741

seq1  TCACTTCCTAGTTGTTTTCCTGACAAGAGCTGAGCAACTCTTTGGTGTTC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCTAGTTGTTTTCCTGACAAGAGCTGAGCAACTCTTTGGTGTTC  791

seq1  TGCCTGGAGGTTTGGCCAGCAGACATGATCTTTGGTTCAGTTTGAACCAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAGGTTTGGCCAGCAGACATGATCTTTGGTTCAGTTTGAACCAT  841

seq1  AATGCAAGAAATGGAGTTGATGAGCCATTCATTGTTGAGAGTGGACATGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGAAATGGAGTTGATGAGCCATTCATTGTTGAGAGTGGACATGA  891

seq1  TGGACTTCAGGAACCTTAACAAAATCATCAGTTTTGGATAGCCCTACAAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCAGGAACCTTAACAAAATCATCAGTTTTGGATAGCCCTACAAA  941

seq1  ATCTAGTGAACGTGGCCTCTTGAACCTGGCACGGTGGCACAAAGAACACC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTGAACGTGGCCTCTTGAACCTGGCACGGTGGCACAAAGAACACC  991

seq1  ATGAGCAATGAGCTAACGGCATAAAACCACTTCAGGAATTCTTGAAGTCC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAATGAGCTAACGGCATAAAACCACTTCAGGAATTCTTGAAGTCC  1041

seq1  TGTGCCTCCTGGCAGAAAACCCCTCAGCATCTTGTATAAGACATCAGAAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCCTGGCAGAAAACCCCTCAGCATCTTGTATAAGACATCAGAAT  1091

seq1  TC  1088
      ||
seq2  TC  1093