BAC Information

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BAC

Clone NameB6Ng01-177J10
ChromosomeX (Build37)
Map Location 159,287,136 - 159,445,690
singlet/doubletdoublet
Overlap geneSyap1, LOC100041607, Ctps2, S100g
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177J10.bB6Ng01-177J10.g
ACCGA004815GA004816
length1,050560
definitionB6Ng01-177J10.b B6Ng01-177J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,444,652 - 159,445,690)(159,287,136 - 159,287,702)
sequence
gaattccatctctgaggcccatgtggtggaaggaaggagtcaagagtggt
cctttaacctctatacagaagccatggcatgaggcccatccttcatgtcc
acccccacaaagaagtaaataaatgtaatacgctttcagaaacaaataaa
aaataaaaaataaaaataaagaaaagcttattttcaaaaggaagaaaagt
catccgcacttagagaagaaattgagcagtataattttaaagtgaaacac
attaaacattatagcataatatctagggatgtcttagaaagaaaaaaaga
cagtccttgtgtttctgcagagctacagagagaagctgtgacacagatca
tgtcacagccggaaactgactatttaaatgaacggatcattgctcggaat
cattttattcaaacaaagtctctgtgtggatatgaagaatgatgaaagag
tttttattttgacgatgccctatcagtcaaacaaagtacctttaaaaaat
aatgctcttaatcactttaaagcacattctgacattctaacaaatctcga
gccttgttcctctcagaatccttaagggacagtagagactcgtggatatg
cttctaaagggtacttaagatcagaatcttctggggaatttgccttcata
aaatgaattccctcgtagtgagcttttaaaaactgcaaggttttacagca
gctctcatttcctttccagccttcattaaatctgaggcatcaatgggaat
ctaaatctttgtgaagaaagaggcccctcggtatttgctgacaataagag
aagcagagaaggaaaagagaataaatacttgaacaaggtaaacaagcagt
tattttgcttaaggaattctctgccatcttctcataagccaagagaaggt
gggtagcctttcaacagcaatcaagtggatcacactttaattcttaacat
taaagacttctaaattcaccattacttattcttattcaaaacttcttaca
ccagggtctggagtgtttccagcattccggaggcagaagcaggtgagatc

caggacagccagggctatacagagaaaccctgtctcaaaaaaaacagaaa
caaaacaaaacaaaaaacaaaactcaattttaggggctggagagatgact
cagcggttatgagcactggctgcccttcctggaggtcctgagtttatttc
ccaagcataggtccgtttcccttcaccatcagcggatcaggaggaaacag
ctctacttgactatggtgtttccagagttctttgatattactaacgcctc
aggtcctacagatcatttgtgtttggccaaatatttatgaataatgtggc
agatattgttttccttgttttgggtaactagtaacttctcagctcgattt
tctaattctctatgatatagctctccccgtttttcttttggtttttcgag
acagggtttctctgtgtagtcctggctgtcctggagctcactctgtacac
caggctgacctcgaactcagaaatctgcctgcctctgcctcctaaatgct
gggattaaaggtgtgcgccacctcgcccggccctttttttaaaataataa
tttcatttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159444652_159445690
seq2: B6Ng01-177J10.b_45_1094 (reverse)

seq1  GATCT-ACCTGCTTCTGCCTCCGGAATGCTGGAAACCACTCCAGACCCT-  48
      ||||| ||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GATCTCACCTGCTTCTGCCTCCGGAATGCTGGAAA-CACTCCAGACCCTG  49

seq1  GTGTA--GAGTTTTGAATTAGAAT-AGTAATGGTG-ATTTAGGAGTCTTT  94
      |||||   |||||||||| ||||| |||||||||| |||||| |||||||
seq2  GTGTAAGAAGTTTTGAATAAGAATAAGTAATGGTGAATTTAGAAGTCTTT  99

seq1  AATGT--AGAATTAAAGTGTGAT-CAC-TGATTGCTGTTG-AAGGCTACC  139
      |||||  |||||||||||||||| ||| |||||||||||| |||||||||
seq2  AATGTTAAGAATTAAAGTGTGATCCACTTGATTGCTGTTGAAAGGCTACC  149

seq1  CACC-TCTCTTGGCTTATGAGAAGATGGCAGAGAATTCCTTAAGC-AAAT  187
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACCTTCTCTTGGCTTATGAGAAGATGGCAGAGAATTCCTTAAGCAAAAT  199

seq1  AACTGCTTGTTTACCTTGTTCAAGTATTTATTCTCTTTTCCTTCTCCTGC  237
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTGCTTGTTTACCTTGTTCAAGTATTTATTCTCTTTTCCTTCT-CTGC  248

seq1  TTCTCTTATTGTCAGCAAATACCGAGGGGCCTCTTTCTTCACAAAGATTT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTATTGTCAGCAAATACCGAGGGGCCTCTTTCTTCACAAAGATTT  298

seq1  AGATTCCCATTGATGCCTCAGATTTAATGAAGGCTGGAAAGGAAATGAGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCATTGATGCCTCAGATTTAATGAAGGCTGGAAAGGAAATGAGA  348

seq1  GCTGCTGTAAAACCTTGCAGTTTTTAAAAGCTCACTACGAGGGAATTCAT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTAAAACCTTGCAGTTTTTAAAAGCTCACTACGAGGGAATTCAT  398

seq1  TTTATGAAGGCAAATTCCCCAGAAGATTCTGATCTTAAGTACCCTTTAGA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAGGCAAATTCCCCAGAAGATTCTGATCTTAAGTACCCTTTAGA  448

seq1  AGCATATCCACGAGTCTCTACTGTCCCTTAAGGATTCTGAGAGGAACAAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATCCACGAGTCTCTACTGTCCCTTAAGGATTCTGAGAGGAACAAG  498

seq1  GCTCGAGATTTGTTAGAATGTCAGAATGTGCTTTAAAGTGATTAAGAGCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGATTTGTTAGAATGTCAGAATGTGCTTTAAAGTGATTAAGAGCA  548

seq1  TTATTTTTTAAAGGTACTTTGTTTGACTGATAGGGCATCGTCAAAATAAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTAAAGGTACTTTGTTTGACTGATAGGGCATCGTCAAAATAAA  598

seq1  AACTCTTTCATCATTCTTCATATCCACACAGAGACTTTGTTTGAATAAAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCATCATTCTTCATATCCACACAGAGACTTTGTTTGAATAAAA  648

seq1  TGATTCCGAGCAATGATCCGTTCATTTAAATAGTCAGTTTCCGGCTGTGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCGAGCAATGATCCGTTCATTTAAATAGTCAGTTTCCGGCTGTGA  698

seq1  CATGATCTGTGTCACAGCTTCTCTCTGTAGCTCTGCAGAAACACAAGGAC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTGTGTCACAGCTTCTCTCTGTAGCTCTGCAGAAACACAAGGAC  748

seq1  TGTCTTTTTTTCTTTCTAAGACATCCCTAGATATTATGCTATAATGTTTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTTTCTTTCTAAGACATCCCTAGATATTATGCTATAATGTTTA  798

seq1  ATGTGTTTCACTTTAAAATTATACTGCTCAATTTCTTCTCTAAGTGCGGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTCACTTTAAAATTATACTGCTCAATTTCTTCTCTAAGTGCGGA  848

seq1  TGACTTTTCTTCCTTTTGAAAATAAGCTTTTCTTTATTTTTATTTTTTAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTCTTCCTTTTGAAAATAAGCTTTTCTTTATTTTTATTTTTTAT  898

seq1  TTTTTATTTGTTTCTGAAAGCGTATTACATTTATTTACTTCTTTGTGGGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTGTTTCTGAAAGCGTATTACATTTATTTACTTCTTTGTGGGG  948

seq1  GTGGACATGAAGGATGGGCCTCATGCCATGGCTTCTGTATAGAGGTTAAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATGAAGGATGGGCCTCATGCCATGGCTTCTGTATAGAGGTTAAA  998

seq1  GGACCACTCTTGACTCCTTCCTTCCACCACATGGGCCTCAGAGATGGAAT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACTCTTGACTCCTTCCTTCCACCACATGGGCCTCAGAGATGGAAT  1048

seq1  TC  1039
      ||
seq2  TC  1050

seq1: chrX_159287136_159287702
seq2: B6Ng01-177J10.g_63_628

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAA  50

seq1  CAGAAACAAAACAAAACAAAAAACAAAACTCAATTTTAGGGGCTGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAAACAAAACAAAAAACAAAACTCAATTTTAGGGGCTGGAGAG  100

seq1  ATGACTCAGCGGTTATGAGCACTGGCTGCCCTTCCTGGAGGTCCTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAGCGGTTATGAGCACTGGCTGCCCTTCCTGGAGGTCCTGAGTT  150

seq1  TATTTCCCAAGCATAGGTCCGTTTCCCTTCACCATCAGCGGATCAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCAAGCATAGGTCCGTTTCCCTTCACCATCAGCGGATCAGGAGG  200

seq1  AAACAGCTCTACTTGACTATGGTGTTTCCAGAGTTCTTTGATATTACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTCTACTTGACTATGGTGTTTCCAGAGTTCTTTGATATTACTAA  250

seq1  CGCCTCAGGTCCTACAGATCATTTGTGTTTGGCCAAATATTTATGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCAGGTCCTACAGATCATTTGTGTTTGGCCAAATATTTATGAATAA  300

seq1  TGTGGCAGATATTGTTTTCCTTGTTTTGGGTAACTAGTAACTTCTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGATATTGTTTTCCTTGTTTTGGGTAACTAGTAACTTCTCAGCT  350

seq1  CGATTTTCTAATTCTCTATGATATAGCTCTCCCCGTTTTTCTTTTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTCTAATTCTCTATGATATAGCTCTCCCCGTTTTTCTTTTGGTTT  400

seq1  TTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAGCTCACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAGCTCACTCT  450

seq1  GTACACCAGGCTGACCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCAGGCTGACCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTA  500

seq1  AATGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGCCCTTTTTTTCAAA  550
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  AATGCTGGGATTAAAGGTGTGCGCCACCTCGCCCGGCCCTTTTTTT-AAA  549

seq1  ATAAATAATTCATTTCC  567
      ||||  | |||||||||
seq2  ATAATAATTTCATTTCC  566