BAC Information

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BAC

Clone NameB6Ng01-177P23
Chromosome1 (Build37)X (Build37)
Map Location 37,769,753 - 37,770,02450,377,537 - 50,377,731
singlet/doubletsingletsinglet
Overlap gene2010300C02Rik
Upstream gene4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a
Downstream geneTsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177P23.bB6Ng01-177P23.g
ACCGA005112GA005113
length272453
definitionB6Ng01-177P23.b B6Ng01-177P23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,769,753 - 37,770,024)(50,377,537 - 50,377,731)
sequence
atagccactatgcctcaagatctccctgccaagatccaggtcagaaactt
ctatctcccagactccagattaggatcactggaaagccttccaattctga
attgtagttcattccagatatagatagtcaaattgacaaccagggatagc
cactacagtgggtgagtttgtccctcatctcctcatcgccattgccctta
ggatataacttctaagtcacaagttgtgtgcatgggaaggtccaaaaaga
gtgtactggggtggggggggga
ttacgacttctcactttcccaggtatctgaaaaaggaaggagatgaaagg
attctccccttgcccggcagttcagcagttaggagctcacactgttctcc
cagaggtcaacgcttgggtctcggtgcccactgcccctggacctccagac
ccagggtatctggcaccctcttctggtctattcacacacctgcactaatg
tgcaccccctccctcaaacacacacacacacacacacacacacacacaca
cacacacacacacacgcacattactaaaagtaaatgtttcttttcttatt
tttatttatttattttatgtataagagtacactgtctctgtcttcagaca
caccagaagagggcatccaatcccattacagacggttgtgagccaccatg
tggtttctgggaattgaactcaggtcctctggaagagcagtcagtgcttt
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37769753_37770024
seq2: B6Ng01-177P23.b_53_324

seq1  ATAGCCACTATGCCTCAAGATCTCCCTGCCAAGATCCAGGTCAGAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCACTATGCCTCAAGATCTCCCTGCCAAGATCCAGGTCAGAAACTT  50

seq1  CTATCTCCCAGACTCCAGATTAGGATCACTGGAAAGCCTTCCAATTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCCAGACTCCAGATTAGGATCACTGGAAAGCCTTCCAATTCTGA  100

seq1  ATTGTAGTTCATTCCAGATATAGATAGTCAAATTGACAACCAGGGATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTTCATTCCAGATATAGATAGTCAAATTGACAACCAGGGATAGC  150

seq1  CACTACAGTGGGTGAGTTTGTCCCTCATCTCCTCATCGCCATTGCCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGTGGGTGAGTTTGTCCCTCATCTCCTCATCGCCATTGCCCTTA  200

seq1  GGATATAACTTCTAAGTCACAAGTTGTGTGCATGGGAAGGTCCAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAACTTCTAAGTCACAAGTTGTGTGCATGGGAAGGTCCAAAAAGA  250

seq1  GTGTACTGGGGTGGGGGGGGGA  272
      ||||||||||||||||||||||
seq2  GTGTACTGGGGTGGGGGGGGGA  272

seq1: chrX_50377537_50377731
seq2: B6Ng01-177P23.g_415_525 (reverse)

seq1  TTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAA  50
      |||| ||||||||||||||||||||||| |||||||||||||||      
seq2  TTAAAAGCACTGACTGCTCTTCCAGAGGACCTGAGTTCAATTCC------  44

seq1  ACACATGGTGGCTCACAACACTCAGCAACCACGTGGTGGCTCACAACACT  100
                                                        
seq2  --------------------------------------------------  44

seq1  GAGCAACCACATGGTGGCTCATAACACTCAGCAACCACGTGGTGGCTCAC  150
                                  ||| |||||| |||||||||||
seq2  ----------------------------CAGAAACCACATGGTGGCTCAC  66

seq1  AACCATCTGGAATGGGATTTGATTCCCTCTTGTGGTGTGTCTGAA  195
      |||| |||| ||||||||| ||| ||||||| |||||||||||||
seq2  AACCGTCTGTAATGGGATTGGATGCCCTCTTCTGGTGTGTCTGAA  111