BAC Information

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BAC

Clone NameB6Ng01-178I05
ChromosomeX (Build37)
Map Location 157,451,949 - 157,453,131
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2, Ppef1, Rs1, Gja6
Downstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47, Nhs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178I05.bB6Ng01-178I05.g
ACCGA005480GA005481
length1,1721,184
definitionB6Ng01-178I05.b B6Ng01-178I05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagataatagatttcagagattcatatttattcaccagcgaccga
gtaaaagaatacctaactagaaacaaagactaaatgattgcaatatatta
gatgcctttagaaatcttactcatggattcactgataccaggaaaggtct
aggcaataccgtttatttggggatcccagtctccctttctatccactttc
ctggacctcatatcattcctgatttggtattttctctttcaaaagtagtt
ctcagaaaaacacttaaaagattctttgaagccaactgatagtattgatg
cgatatgtgtatttttttccctgacagttgacactttaacaccaaagtga
ccaattaattagtaaaactagcaaaatcccagtataaaaatccaatatta
ctgagagtaatagcattattcatgatagtaaaaaatagcagaaacaactc
aaatgtctatgaatggacagctaaacaaaatgtatatccattcaatgaaa
taccactaggcaatgaaaacaaatatgtttttgtttgttttttcaatgcc
gaggattgaaccccgggtctcaattctctgcaaccaaagtcacccccacc
cctaccccaggaataaaaccctgatacattatacagtgtgaatcaacctt
gacattatttaaataaaggaagttagacacaaaagaccacatactatatg
ttttcatttgtacaaaatagccagagtaggcaaatccatagagaccaaga
gagtgaactgacagtttcttggggttgggagatcagtgatcggtgatgaa
tttggggttccttttgaaatcttgctgagtaagaatcagagattctaggg
ataaaaatttaaagaagccctcactaaatagtcatagtcttactatatat
aagcttaaggtttgtttgttttttttttttttttttagaatttaagaaga
tgttctaagtcttatgagatgtttttaggatggtaatacaagttagcatg
aaaattatgatttagatacagaactccaccaagataggatagattgtaga
tacttctttctagttgccaatacaaaaagactgacttaaacgtaactcta
ctatattttcatattgttcataggtgtcctactactggatgttgttttat
ttagaagaaaggaccttttatt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcccaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaaatgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcataggctcccaa
tggagagctagagaaagtacccaagagctaaagggattcttcaccctata
ggtggaacacatatgactaaccagtacccctgagctcttgactctagctg
caatatgtatcaaagatggcctagtccgcatcacttgaagagaagtcatg
accgcagacctttggtgcccgtaagggcacgcaggctacgtgcatggcct
gctaaggcatctcgctaacgtgggtgatgcgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_157451949_157453131
seq2: B6Ng01-178I05.b_45_1216

seq1  GAATTCAGATAATAGATTTCAGAGATTCATATTTATTCACCAGCGACCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATAATAGATTTCAGAGATTCATATTTATTCACCAGCGACCGA  50

seq1  GTAAAAGAATACCTAACTAGAAACAAAGACTAAATGATTGCAATATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGAATACCTAACTAGAAACAAAGACTAAATGATTGCAATATATTA  100

seq1  GATGCCTTTAGAAATCTTACTCATGGATTCACTGATACCAGGAAAGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTTTAGAAATCTTACTCATGGATTCACTGATACCAGGAAAGGTCT  150

seq1  AGGCAATACCGTTTATTTGGGGATCCCAGTCTCCCTTTCTATCCACTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATACCGTTTATTTGGGGATCCCAGTCTCCCTTTCTATCCACTTTC  200

seq1  CTGGACCTCATATCATTCCTGATTTGGTATTTTCTCTTTCAAAAGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTCATATCATTCCTGATTTGGTATTTTCTCTTTCAAAAGTAGTT  250

seq1  CTCAGAAAAACACTTAAAAGATTCTTTGAAGCCAACTGATAGTATTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAAACACTTAAAAGATTCTTTGAAGCCAACTGATAGTATTGATG  300

seq1  CGATATGTGTATTTTTTTCCCTGACAGTTGACACTTTAACACCAAAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATGTGTATTTTTTTCCCTGACAGTTGACACTTTAACACCAAAGTGA  350

seq1  CCAATTAATTAGTAAAACTAGCAAAATCCCAGTATAAAAATCCAATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAATTAGTAAAACTAGCAAAATCCCAGTATAAAAATCCAATATTA  400

seq1  CTGAGAGTAATAGCATTATTCATGATAGTAAAAAATAGCAGAAACAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTAATAGCATTATTCATGATAGTAAAAAATAGCAGAAACAACTC  450

seq1  AAATGTCTATGAATGGACAGCTAAACAAAATGTATATCCATTCAATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTATGAATGGACAGCTAAACAAAATGTATATCCATTCAATGAAA  500

seq1  TACCACTAGGCAATGAAAACAAATATGTTTTTGTTTGTTTTTTCAATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTAGGCAATGAAAACAAATATGTTTTTGTTTGTTTTTTCAATGCC  550

seq1  GAGGATTGAACCCCGGGTCTCAATTCTCTGCAACCAAAGTCACCCCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGAACCCCGGGTCTCAATTCTCTGCAACCAAAGTCACCCCCACC  600

seq1  CCTACCCCAGGAATAAAACCCTGATACATTATACAGTGTGAATCAACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCCAGGAATAAAACCCTGATACATTATACAGTGTGAATCAACCTT  650

seq1  GACATTATTTAAATAAAGGAAGTTAGACACAAAAGACCACATACTATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATTTAAATAAAGGAAGTTAGACACAAAAGACCACATACTATATG  700

seq1  TTTTCATTTGTACAAAATAGCCAGAGTAGGCAAATCCATAGAGACCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTGTACAAAATAGCCAGAGTAGGCAAATCCATAGAGACCAAGA  750

seq1  GAGTGAACTGACAGTTTCTTGGGGTTGGGAGATCAGTGATCGGTGATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAACTGACAGTTTCTTGGGGTTGGGAGATCAGTGATCGGTGATGAA  800

seq1  TTTGGGGTTCCTTTTGAAATCTTGCTGAGTAAGAATCAGAGATTCTAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTCCTTTTGAAATCTTGCTGAGTAAGAATCAGAGATTCTAGGG  850

seq1  ATAAAAATTTAAAGAAGCCCTCACTAAATAGTCATAGTCTTACTATATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTTAAAGAAGCCCTCACTAAATAGTCATAGTCTTACTATATAT  900

seq1  AAGCTTAAGGTTTGTTTG--TTTTTTTTTTTTTTTTAGAATTTAAGAAGA  948
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  AAGCTTAAGGTTTGTTTGTTTTTTTTTTTTTTTTTTAGAATTTAAGAAGA  950

seq1  TGTTCTAAGTC-TATGAAGATGTTTTTAGGATGGTAATACAAGTTAGCAT  997
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGTCTTATG-AGATGTTTTTAGGATGGTAATACAAGTTAGCAT  999

seq1  GAAAA-TATGATTTAGATACAGAACT-CACCAAGATAGGATAGATGGTAG  1045
      ||||| |||||||||||||||||||| |||||||||||||||||| ||||
seq2  GAAAATTATGATTTAGATACAGAACTCCACCAAGATAGGATAGATTGTAG  1049

seq1  AATACTTCTTCTAAGTTGCCAAATACAAATAGACTGGACCTTAAACGTAA  1095
       |||||||||   ||||||| |||||||| ||||||   |||||||||||
seq2  -ATACTTCTTTCTAGTTGCC-AATACAAAAAGACTG--ACTTAAACGTAA  1095

seq1  CTCTTACCTAATAATTTTCATAATTGTTTCATAGTTGTTCCTACTTACTG  1145
      ||||   |||   |||||||| |||| ||||||| || |||||| |||||
seq2  CTCT--ACTA--TATTTTCAT-ATTG-TTCATAGGTG-TCCTAC-TACTG  1137

seq1  TATGTTGTTTATATTAGAAGAAAAAGAACCTTTATATT  1183
       |||||||||   |||||||  |||| |||||| ||||
seq2  GATGTTGTTTTATTTAGAAG--AAAGGACCTTT-TATT  1172