BAC Information

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BAC

Clone NameB6Ng01-178N05
ChromosomeX (Build37)
Map Location 135,974,975 - 135,976,044
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1rapl2, Nrk, Serpina7, 4930513O06Rik, 4933428M09Rik, Mum1l1, LOC675062, Trap1a, C330013F16Rik, EG666359
Downstream geneD330045A20Rik, Rnf128, LOC622432, Tbc1d8b, Ripply1, Cldn2, Morc4, Rbm41, Gm719, E230019M04Rik, LOC622213, LOC100041446, EG245643
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178N05.bB6Ng01-178N05.g
ACCGA005706GA005707
length1,2181,083
definitionB6Ng01-178N05.b B6Ng01-178N05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttataaccacatgggacaaggaattgttgaacgtgctcatcgca
ccctgaaaaaattggcttttaaaatgaaacaggggcagttataccctcca
aagacaccaaaagcacatcttgcttttgtcttgtttgttttaaatttttt
gcaaactgatattaaaggtcagtctgcagctgatcgccaatggcatccag
ttacttccagttcttatgccatggttaaatgacggaacccattaactaat
atgtggaatggtccagaccccgttttaatctgaggaagaggttctgtctg
tattttttcacaaaaagaagacggagcacgatggctgcctgaaagactgg
ttcgtcaagtggacacagatcctgaatcttctaggaagtatgattctaac
cactgatggctaaaaatcctttttagccgaaaaagttaatttggagcaca
gcctccactttcagagaattttcagcttttctgttaattctcaaagttac
ctcccccacactgagaggtcagagtctgagcttccccacactgagaggtc
agagtctgagcttgatcgttgctaatttgcaactgaataaagtacctgga
cttccccaaagaagcttttatcctgttacttttcaactatctcaagcagg
tcagtctctccttacagcctgatttcagcaagcgtgcagcctcacctcca
gcaagcacaggtggcagaaattaatcaatatgaagaagcatattaagtat
atattgtggctttggtctgatttgggaataaggtgtgctatgagggccga
tcagtcaatgacatgcaaccagatttcggagccatatcaatctaagacag
aggtacatgccaagaggccatggtttgttaataatacaccacagagccat
gtttgtgtaaaataaacacaaagaagctgcatgtatgcttcttgatagat
aagaatggctcgggagaatctgagtcccaagccagggcccggctgccagc
tacatactcccagcaggatgatggagcataaataaattttatgttctcgg
tcagctaattttatattttatcagggggaaactgtagctccccagcttgg
agcagctgattccgacttgcagccactgaattgaaaccactgggtgtacg
tcaacttgatggctaattggtatgtcactacgtgctgcctctctctcgtg
aagactcgtgccatacct
gaattctacccttctgtaagaacaacaagggttcttaatagctgagctat
ctctccagcccacaatacaatttatttttatttttatttttattattttg
gttttttgagacagggtttctctgtgtagccctggctgtcctggaactca
ctctgtagaccaggctggccttgaactcagaaatccacctgcctctgcct
ctgcctcccaagtgtgggattaaaggcgtgcactgccaccacccggccaa
tatttttattgcatgtgtgtgaatgggtatgtgtatgtgcacatgtgccc
gtacatacacacacagacacacacagacacacacagacacacacagacac
acacacacacacacacacacgcacgcacgcacgcacgcgcgcgcgcgcgc
gcgcgcgcgcacgtgcacgtacatagcctcgggtgtcagtctttaccttt
tacattgtttgagacagggtctcttcactgtttgccactgtgtgttgtag
agtagctgtgtatggcccactagcttgcagcattctgttgtcttcatgtt
tcatctccccataggagtgctgctagcacagccatgaattactgcagcaa
aatttcatataagttctagaaaaacaaacttgtacaataatatttgcata
gcaagcactgtagcaactgagcactttaacatcaccccccactcccagtg
ttttctacatgtcacatgtatgcaatgaaaagaggaaacatgataatttt
ctatatcataaatagcatcgttttatagttttacttttcttctcagatct
agtcatttaaacttttcctttctattctatggaggatttctcttttcata
ctcctttttaaatatctacccaatatccaatatttatgatagtccaatga
ttattggatgattcacctgttggaaggaacatgattattccttcagtttg
tgttgaggactcagtaataaaatagtgaaacaccaagttttccagatatt
tttcttcattaaaccttgttcaacatttggccctttctaaccaatgggat
gttactgactggttaacattttttgtgttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_135974975_135976044
seq2: B6Ng01-178N05.g_64_1146 (reverse)

seq1  AAAT-ACAC-AAAAATGTT-ACCAGTCAGTAACAT-CCATTTGTTAGAAA  46
      |||| |||| ||||||||| ||||||||||||||| ||||| ||||||||
seq2  AAATAACACAAAAAATGTTAACCAGTCAGTAACATCCCATTGGTTAGAAA  50

seq1  GGGCAAAATGTTGAAC-AGGTTT-ATGA--GAAAATATCTGGAAAACTTG  92
      |||| ||||||||||| |||||| ||||   |||||||||||||||||||
seq2  GGGCCAAATGTTGAACAAGGTTTAATGAAGAAAAATATCTGGAAAACTTG  100

seq1  GTG-TTCACTA-TTTATTACTGTGT-CTCAACACAAACTG-AGGAATAAT  138
      ||| ||||||| |||||||||| || |||||||||||||| |||||||||
seq2  GTGTTTCACTATTTTATTACTGAGTCCTCAACACAAACTGAAGGAATAAT  150

seq1  CAATGTCCTTCCAACAGGTGAATCATCAAATAATCATTGGACTATCATAA  188
      ||   |||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATGTTCCTTCCAACAGGTGAATCATCCAATAATCATTGGACTATCATAA  200

seq1  ATATTGGATATTGGGTAGATATTT-AAAAGGAGTATGAAAAGAGAAATCC  237
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATATTGGATATTGGGTAGATATTTAAAAAGGAGTATGAAAAGAGAAATCC  250

seq1  TCCATAAGAATAGAAAGGAAAAGTTTAAATGACTAGATCTGAGAAGAAAA  287
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAT-AGAATAGAAAGGAAAAGTTTAAATGACTAGATCTGAGAAGAAAA  299

seq1  GTAAAACTATAAAACGATGCTATTTATGATATAGAAAATTATCATGTTTC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTATAAAACGATGCTATTTATGATATAGAAAATTATCATGTTTC  349

seq1  CTCTTTTCATTGCATACATGTGACATGTAGAAAACACTGGGAGT-GGGGG  386
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTTTTCATTGCATACATGTGACATGTAGAAAACACTGGGAGTGGGGGG  399

seq1  TGATGTTAAAGTGCTCAGTTGCTACAGTGCTTGCTATGCAAATATTATTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTAAAGTGCTCAGTTGCTACAGTGCTTGCTATGCAAATATTATTG  449

seq1  TACAAGTTTGTTTTTCTAGAACTTATATGAAATTTTGCTGCAGTAATTCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTTGTTTTTCTAGAACTTATATGAAATTTTGCTGCAGTAATTCA  499

seq1  TGGCTGTGCTAGCAGCACTCCTATGGGGAGATGAAACATGAAGACAACAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGCTAGCAGCACTCCTATGGGGAGATGAAACATGAAGACAACAG  549

seq1  AATGCTGCAAGCTAGTGGGCCATACACAGCTACTCTACAACACACAGTGG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGCAAGCTAGTGGGCCATACACAGCTACTCTACAACACACAGTGG  599

seq1  CAAACAGTGAAGAGACCCTGTCTCAAACAATGTAAAAGGTAAAGACTGAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGTGAAGAGACCCTGTCTCAAACAATGTAAAAGGTAAAGACTGAC  649

seq1  ACCCGAGGCTATGTACGTGCACGTGCGCGCGCGCGCGCGCGCGCGCGCGT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAGGCTATGTACGTGCACGTGCGCGCGCGCGCGCGCGCGCGCGCGT  699

seq1  GCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTCT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTCT  749

seq1  GTGTGTGTCTGTGTGTGTCTGTGTGTGTATGTACGGGCACATGTGCACAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTGTGTGTGTCTGTGTGTGTATGTACGGGCACATGTGCACAT  799

seq1  ACACATACCCATTCACACACATGCAATAAAAATATTGGCCGGGTGGTGGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACCCATTCACACACATGCAATAAAAATATTGGCCGGGTGGTGGC  849

seq1  AGTGCACGCCTTTAATCCCACACTTGGGAGGCAGAGGCAGAGGCAGGTGG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACGCCTTTAATCCCACACTTGGGAGGCAGAGGCAGAGGCAGGTGG  899

seq1  ATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  949

seq1  CAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAATAATAAAAATA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAATAATAAAAATA  999

seq1  AAAATAAAAATAAATTGTATTGTGGGCTGGAGAGATAGCTCAGCTATTAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAATAAATTGTATTGTGGGCTGGAGAGATAGCTCAGCTATTAA  1049

seq1  GAACCCTTGTTGTTCTTACAGAAGGGTAGAATTC  1070
      ||||||||||||||||||||||||||||||||||
seq2  GAACCCTTGTTGTTCTTACAGAAGGGTAGAATTC  1083