BAC Information

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BAC

Clone NameB6Ng01-180A24
ChromosomeX (Build37)
Map Location 37,133,947 - 37,295,616
singlet/doubletdoublet
Overlap genenone
Upstream gene6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
Downstream geneEG636756, EG636766, EG245391, LOC100039769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180A24.bB6Ng01-180A24.g
ACCGA006602GA006603
length9191,179
definitionB6Ng01-180A24.b B6Ng01-180A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,133,947 - 37,134,716)(37,294,434 - 37,295,616)
sequence
gaattcatctctgaaaacagctttagtgttgaaaggggacagcagagaga
gcaagagtgaggggtgggaacaggagggggaagtaagagagcatccatct
actgtaactagtagaaaattaatttggccttctttagtctcaaattcctc
atttgaaaaatgattaacatcaataccataagtggactagtgaactgaga
agacatgtaaagcaactctgaagcctagtatatatcttaagtttactgtt
ttgtcattttttttaaagttcttgtgctcttttgtgattgagttacctca
ctcaggatgatatttttacacatggtatgtgctcacagataagtggatat
tagcccaaacattcagaagattcaattcacagaccatatgaagcctaaga
agaaggaagaccaaaatgtggatgcttcagtccttctggttttttgtttg
tttgtttggtttttgttttgttttctattgtttttgtttttgtttgattt
ttcgagacagggtttctctgtgtagcactggctgtcctggaattcacttt
gtagactaggctggcctcgaactcagaaattctgcctgcctctgcctccc
aagtgctgggattaaaggcgtgtgccatcacccaacttcagtccttctaa
gaagggggaacaaaattctcatagcagcgaaatatggagacaaattgtgg
agcagagactgaaggaaaggccatccagagactgccctacctagggatcc
atcccatatacagtcacaaactaggatattattctggatgccaagaaatg
cttgctgacagaacctgatatggctgtctcctactaggctttgccagagc
ctgaccaatacagaggcggatactttgcagctactgagagcagattcttc
aatgggagagatggagaga

gaattcccttgaaggaaaattataaataagggaaaactaaactgtgtctc
aaaataccctcatatgagccatatacagaatttattagcattgaacttgc
cattgagatcctattgcctctgcaacaatgatctaaaaacagtgactgaa
aaagaaaacaaaaggcttaagcccttcagagctaattagtatttgcatat
gtcaaggatcctgactttcaagttagctaacagaaagggatcactgtgaa
tgtgacaaggggaaagaaaatacttcagctgaagatattaaaaaggattg
tgagaattaatttatttgaaaagtcattcaacttgggaattctgatcttt
aaattgaattttcatctttaagtttgcacttaatgatgctttgtaaacag
cttggatttgcttaaagctcataaaatacgttcaatatataagatcactt
aatacgtacaaaaaatagtggtgctcattaaatttctcttgaaattattt
gctagtttcaaaacacacttttgaaatcataagaaatctcctcctcccgg
gcccagcttatactaatacccagaaacacatattacgggcatttataaag
aacgaagactgctgaatacatcacagcagaagtgttgatagtgaagaatt
tataagatcataggtacacagtgctactcaatttaatataatcatttccc
agttatagttacttaatcagaggtcaagatggttccggttattagtccat
ttgggttacaatataaaatatcatagatagaaaataaagaacaaaaatat
cttatttgtagggatgggattgtccattatcaaggaaatggcaaagttga
tgtctggtaaggatacatttcctcatttatagatattattattctcacac
agtagaaaaaggaaggcacctctcagaattcacttttgcaagggtgtaaa
ttcgattcctgagtgctctgccagtatattttagttatcttctgtggtcc
tacttcctaacagcatcacattgacactttaggttttcatcactaataca
ggggacacacacattcatcatacattgacctccatacctcaatctctgta
gtcacaatacaaatatactaattcatgtagtagccttaaaaatatttaac
ctcattgtgagcaccccaacttctaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_37133947_37134716
seq2: B6Ng01-180A24.b_45_814

seq1  GAATTCATCTCTGAAAACAGCTTTAGTGTTGAAAGGGGACAGCAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTGAAAACAGCTTTAGTGTTGAAAGGGGACAGCAGAGAGA  50

seq1  GCAAGAGTGAGGGGTGGGAACAGGAGGGGGAAGTAAGAGAGCATCCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTGAGGGGTGGGAACAGGAGGGGGAAGTAAGAGAGCATCCATCT  100

seq1  ACTGTAACTAGTAGAAAATTAATTTGGCCTTCTTTAGTCTCAAATTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACTAGTAGAAAATTAATTTGGCCTTCTTTAGTCTCAAATTCCTC  150

seq1  ATTTGAAAAATGATTAACATCAATACCATAAGTGGACTAGTGAACTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAAATGATTAACATCAATACCATAAGTGGACTAGTGAACTGAGA  200

seq1  AGACATGTAAAGCAACTCTGAAGCCTAGTATATATCTTAAGTTTACTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTAAAGCAACTCTGAAGCCTAGTATATATCTTAAGTTTACTGTT  250

seq1  TTGTCATTTTTTTTAAAGTTCTTGTGCTCTTTTGTGATTGAGTTACCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTTTTTTAAAGTTCTTGTGCTCTTTTGTGATTGAGTTACCTCA  300

seq1  CTCAGGATGATATTTTTACACATGGTATGTGCTCACAGATAAGTGGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATGATATTTTTACACATGGTATGTGCTCACAGATAAGTGGATAT  350

seq1  TAGCCCAAACATTCAGAAGATTCAATTCACAGACCATATGAAGCCTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAAACATTCAGAAGATTCAATTCACAGACCATATGAAGCCTAAGA  400

seq1  AGAAGGAAGACCAAAATGTGGATGCTTCAGTCCTTCTGGTTTTTTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGACCAAAATGTGGATGCTTCAGTCCTTCTGGTTTTTTGTTTG  450

seq1  TTTGTTTGGTTTTTGTTTTGTTTTCTATTGTTTTTGTTTTTGTTTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGTTTTTGTTTTGTTTTCTATTGTTTTTGTTTTTGTTTGATTT  500

seq1  TTCGAGACAGGGTTTCTCTGTGTAGCACTGGCTGTCCTGGAATTCACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGACAGGGTTTCTCTGTGTAGCACTGGCTGTCCTGGAATTCACTTT  550

seq1  GTAGACTAGGCTGGCCTCGAACTCAGAAATTCTGCCTGCCTCTGCCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTAGGCTGGCCTCGAACTCAGAAATTCTGCCTGCCTCTGCCTCCC  600

seq1  AAGTGCTGGGATTAAAGGCGTGTGCCATCACCCAACTTCAGTCCTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTAAAGGCGTGTGCCATCACCCAACTTCAGTCCTTCTAA  650

seq1  GAAGGGGGAACAAAATTCTCATAGGAG-GAAATATGGAGACAAATTGTGG  699
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  GAAGGGGGAACAAAATTCTCATAGCAGCGAAATATGGAGACAAATTGTGG  700

seq1  AGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCTACCTAGGGATCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGCCCTACCTAGGGATCC  750

seq1  ATCCCATATACAGTCAACAAA  770
      ||||||||||||||| |||||
seq2  ATCCCATATACAGTC-ACAAA  770


seq1: chrX_37294434_37295616
seq2: B6Ng01-180A24.g_70_1247 (reverse)

seq1  -TTTTGAAGT--GGGTGCT-ACAATGAG--TTAATATTTTAGGGGCTACT  44
       ||| |||||  ||||||| ||||||||  | ||||||||   |||||||
seq2  TTTTAGAAGTTGGGGTGCTCACAATGAGGTTAAATATTTTTAAGGCTACT  50

seq1  AACATAGAATAAGTATATTTTGTA-TGTGACTACAGGAGATTTGGAGGTA  93
       |||| |||| |||||| |||||| |||||||||| ||||||  ||||||
seq2  -ACAT-GAATTAGTATA-TTTGTATTGTGACTACA-GAGATT--GAGGTA  94

seq1  TTGAGGTCAAATGTTATGATTGAAATGTGTGTGTCCCCCTGTATTAGTTG  143
      | |||||| |||| ||||||   ||||||||||| |||||||||||| ||
seq2  TGGAGGTC-AATG-TATGAT--GAATGTGTGTGT-CCCCTGTATTAG-TG  138

seq1  ATGAAAACCT-AAGTGTCAATGTGATGCTGTTAGGAAGTAAGGACCACAG  192
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  ATGAAAACCTAAAGTGTCAATGTGATGCTGTTAGGAAGT-AGGACCACAG  187

seq1  AAGATAACTAAAATATACTGGCAGAGCACTCAGGAATCGAATTTACACCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAACTAAAATATACTGGCAGAGCACTCAGGAATCGAATTTACACCC  237

seq1  TTGCAAAAGTGAATTCTGAGAGGTGCCTTCCTTTTTCTACTGTGTGAGAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAGTGAATTCTGAGAGGTGCCTTCCTTTTTCTACTGTGTGAGAA  287

seq1  TAATAATATCTATAAATGAGGAAATGTATCCTTACCAGACATCAACTTTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATATCTATAAATGAGGAAATGTATCCTTACCAGACATCAACTTTG  337

seq1  CCATTTCCTTGATAATGGACAATCCCATCCCTACAAATAAGATATTTTTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTTGATAATGGACAATCCCATCCCTACAAATAAGATATTTTTG  387

seq1  TTCTTTATTTTCTATCTATGATATTTTATATTGTAACCCAAATGGACTAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTTCTATCTATGATATTTTATATTGTAACCCAAATGGACTAA  437

seq1  TAACCGGAACCATCTTGACCTCTGATTAAGTAACTATAACTGGGAAATGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCGGAACCATCTTGACCTCTGATTAAGTAACTATAACTGGGAAATGA  487

seq1  TTATATTAAATTGAGTAGCACTGTGTACCTATGATCTTATAAATTCTTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAAATTGAGTAGCACTGTGTACCTATGATCTTATAAATTCTTCA  537

seq1  CTATCAACACTTCTGCTGTGATGTATTCAGCAGTCTTCGTTCTTTATAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACACTTCTGCTGTGATGTATTCAGCAGTCTTCGTTCTTTATAAA  587

seq1  TGCCCGTAATATGTGTTTCTGGGTATTAGTATAAGCTGGGCCCGGGAGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGTAATATGTGTTTCTGGGTATTAGTATAAGCTGGGCCCGGGAGGA  637

seq1  GGAGATTTCTTATGATTTCAAAAGTGTGTTTTGAAACTAGCAAATAATTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTCTTATGATTTCAAAAGTGTGTTTTGAAACTAGCAAATAATTT  687

seq1  CAAGAGAAATTTAATGAGCACCACTATTTTTTGTACGTATTAAGTGATCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAATTTAATGAGCACCACTATTTTTTGTACGTATTAAGTGATCT  737

seq1  TATATATTGAACGTATTTTATGAGCTTTAAGCAAATCCAAGCTGTTTACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTGAACGTATTTTATGAGCTTTAAGCAAATCCAAGCTGTTTACA  787

seq1  AAGCATCATTAAGTGCAAACTTAAAGATGAAAATTCAATTTAAAGATCAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCATTAAGTGCAAACTTAAAGATGAAAATTCAATTTAAAGATCAG  837

seq1  AATTCCCAAGTTGAATGACTTTTCAAATAAATTAATTCTCACAATCCTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAAGTTGAATGACTTTTCAAATAAATTAATTCTCACAATCCTTT  887

seq1  TTAATATCTTCAGCTGAAGTATTTTCTTTCCCCTTGTCACATTCACAGTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTTCAGCTGAAGTATTTTCTTTCCCCTTGTCACATTCACAGTG  937

seq1  ATCCCTTTCTGTTAGCTAACTTGAAAGTCAGGATCCTTGACATATGCAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTCTGTTAGCTAACTTGAAAGTCAGGATCCTTGACATATGCAAA  987

seq1  TACTAATTAGCTCTGAAGGGCTTAAGCCTTTTGTTTTCTTTTTCAGTCAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTAGCTCTGAAGGGCTTAAGCCTTTTGTTTTCTTTTTCAGTCAC  1037

seq1  TGTTTTTAGATCATTGTTGCAGAGGCAATAGGATCTCAATGGCAAGTTCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAGATCATTGTTGCAGAGGCAATAGGATCTCAATGGCAAGTTCA  1087

seq1  ATGCTAATAAATTCTGTATATGGCTCATATGAGGGTATTTTGAGACACAG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATAAATTCTGTATATGGCTCATATGAGGGTATTTTGAGACACAG  1137

seq1  TTTAGTTTTCCCTTATTTATAATTTTCCTTCAAGGGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTTCCCTTATTTATAATTTTCCTTCAAGGGAATTC  1178


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