BAC Information

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BAC

Clone NameB6Ng01-180G21
Chromosome3 (Build37)X (Build37)
Map Location 111,663,489 - 111,664,64914,163,637 - 14,164,155
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043190, LOC668712
Downstream geneLOC625585, EG229746, LOC668717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180G21.bB6Ng01-180G21.g
ACCGA006864GA006865
length1,1541,038
definitionB6Ng01-180G21.b B6Ng01-180G21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,663,489 - 111,664,649)(14,163,637 - 14,164,155)
sequence
gaattcatcatgaattttaaggaaagctgggaatgatacatgggagcatt
tgggggaaagaagaagagaaataaatgttgtagttaaatttatatttcca
aaaagtgtaaaatacattgcaagtagtaattagaaactcttctctttagt
aaacatattaccttcagtcttctggtgatatacattcatttactcatgtt
aacagatttatcatactatgaaatatagagaatacaaatataccttaaac
atatattatatatgtgttattttattataaccattgaagccagtttactt
cgcatcaagtcaacaactctatggaaatatgtaaattgtttttgagggtt
atgtaagatgcaaggaatggaactaggtaatatacactgatacatgattg
aatgatgggttcataggaatgaacatgtgagatggagtgattatatcttc
tttaagatgacacttgaatgacattgtcatatcatgtgctaaggtcttgt
gtcttccttactggatgacattggatgattacaaaaataaccacttttta
ttggcatacaacatacttataaagacaggtttataaattcaaataatata
taattataaggttcaaatttaaaactggaaactttttgggccagtaaatc
tatcagcaagaaagtagactgagtgggactctacacatatcatgtagaaa
aaaaatctgtgtttgaatttctcataaactatttaaatgttagcagcaat
caaatttgttagatttattatctcattgataaattatagtgatataaaat
tgtgggtttcttaagcaaaagtattaaagtcttttatactttttgttgaa
ttttgtaaataataaatttctattataattgacatgtacaatttcttttg
ttgtaaacacctaaaattcttagacaaaagttaatgtacaaaacattttt
aaatattaaaagaaacatctttctaacacattcaaaactgtttttggttc
tggtcattgttttctgtaaatagcaaatttctccatacatgccatttgat
agaattttagtggagcacttaaaagcaaatgcctaactatctcttttctg
tacttatacatctattgatataagcccctaaggactcttttgtgactttg
cttg

gaattcctcttggaagattttacctttgatgagtatgaagtgcccctcct
tgtcttttttgatgactttgggttggaagtagattttattagatattaga
atgtctactccagcttgtttcttcagtccatttgcttggaatattgtttt
ccagcctttcattctgagatagtgtctatctttttccctgagatgggttt
cctataagcagcacaatgttgggtcctgtttatgtagccagtctgttagt
ctatgtctttttattggggtgttgagtccattgttattaagagatattaa
ggaaaagtaattgtttcttcctattattttgttgttaaagttggcattct
gttcttgtggctgacttgttttaggtttgttgagggattaccttcttgct
ttttctaggacatggtttccgtccttgtattggctttattctgtcattat
cctttgaagggcgggattcttggaaagataatgtgtgaatttggttttat
cgtggaatactttggtttctccatctaaggtaattgaaagtttggctggt
tataatagcctgagttgtcatttgtgttctctatgtgtctgtataacatc
tgtccaggctcttctggctttcatagtctctggtgaaaaatctggtgtaa
ttctgatagacttgcctttatattttacttgacctttttcccttactgct
cttaatattctatctttatttactgcatttgttgttctgattattatgtg
ttgggaggaacttcttttctggtccagtcttatttggagttctgtaggct
tcttgtgtgttcatgggcatcttttcttagatttgggaagttttcttcta
taattttgttgaagatattagctgggccctttaagttgaaaattcttcat
tctcatctactcctattatctgtattgtttggccttctcacttgtgtcct
ggatttcctggtatgtttgagttaggatcttttttgcattttcattttct
ttgataattgtgcaatgtttctattgaatcttctgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_111663489_111664649
seq2: B6Ng01-180G21.b_42_1195

seq1  GAATTCATCATGAATTTTAAGGAAAGCTGGGAATGATACATGGGAGCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGAATTTTAAGGAAAGCTGGGAATGATACATGGGAGCATT  50

seq1  TGGGGGAAAGAAGAAGAGAAATAAATGTTGTAGTTAAATTTATATTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAAGAAGAAGAGAAATAAATGTTGTAGTTAAATTTATATTTCCA  100

seq1  AAAAGTGTAAAATACATTGCAAGTAGTAATTAGAAACTCTTCTCTTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTAAAATACATTGCAAGTAGTAATTAGAAACTCTTCTCTTTAGT  150

seq1  AAACATATTACCTTCAGTCTTCTGGTGATATACATTCATTTACTCATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTACCTTCAGTCTTCTGGTGATATACATTCATTTACTCATGTT  200

seq1  AACAGATTTATCATACTATGAAATATAGAGAATACAAATATACCTTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTTATCATACTATGAAATATAGAGAATACAAATATACCTTAAAC  250

seq1  ATATATTATATATGTGTTATTTTATTATAACCATTGAAGCCAGTTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATATATGTGTTATTTTATTATAACCATTGAAGCCAGTTTACTT  300

seq1  CGCATCAAGTCAACAACTCTATGGAAATATGTAAATTGTTTTTGAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCAAGTCAACAACTCTATGGAAATATGTAAATTGTTTTTGAGGGTT  350

seq1  ATGTAAGATGCAAGGAATGGAACTAGGTAATATACACTGATACATGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGATGCAAGGAATGGAACTAGGTAATATACACTGATACATGATTG  400

seq1  AATGATGGGTTCATAGGAATGAACATGTGAGATGGAGTGATTATATCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGGTTCATAGGAATGAACATGTGAGATGGAGTGATTATATCTTC  450

seq1  TTTAAGATGACACTTGAATGACATTGTCATATCATGTGCTAAGGTCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATGACACTTGAATGACATTGTCATATCATGTGCTAAGGTCTTGT  500

seq1  GTCTTCCTTACTGGATGACATTGGATGATTACAAAAATAACCACTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTTACTGGATGACATTGGATGATTACAAAAATAACCACTTTTTA  550

seq1  TTGGCATACAACATACTTATAAAGACAGGTTTATAAATTCAAATAATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATACAACATACTTATAAAGACAGGTTTATAAATTCAAATAATATA  600

seq1  TAATTATAAGGTTCAAATTTAAAACTGGAAACTTTTTGGGCCAGTAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAAGGTTCAAATTTAAAACTGGAAACTTTTTGGGCCAGTAAATC  650

seq1  TATCAGCAAGAAAGTAGACTGAGTGGGACTCTACACATATCATGTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCAAGAAAGTAGACTGAGTGGGACTCTACACATATCATGTAGAAA  700

seq1  AAAAATCTGTGTTTGAATTTCTCATAAACTATTTAAATGTTAGCAGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGTGTTTGAATTTCTCATAAACTATTTAAATGTTAGCAGCAAT  750

seq1  CAAATTTGTTAGATTTATTATCTCATTGATAAATTATAGTGATATAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGTTAGATTTATTATCTCATTGATAAATTATAGTGATATAAAAT  800

seq1  TGTGGGTTTCTTAAGCAAAAGTATTAAAGTCTTTTATACTTTTTGTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTCTTAAGCAAAAGTATTAAAGTCTTTTATACTTTTTGTTGAA  850

seq1  TTTTGTAAATAATAAATTTCTATTATAATTGACATGTACAATTTCTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAATAATAAATTTCTATTATAATTGACATGTACAATTTCTTTTG  900

seq1  TTGTAAACACCTAAAATTCTTAGACAAAAGTTAATGTACAAAACATTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACACCTAAAATTCTTAGACAAAAGTTAATGTACAAAACATTTTT  950

seq1  AAATATTAAAAGAAACATCTTTCTAACACATTCAAAAACTGTTTTTGGTT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATATTAAAAGAAACATCTTTCTAACACATTC-AAAACTGTTTTTGGTT  999

seq1  CTGGTCATTGTTTTCTGTAAAATAAGCAAATTTCTTCATACATGCCCATT  1050
      |||||||||||||||||||||   ||||||||||| ||||||||||   |
seq2  CTGGTCATTGTTTTCTGTAAA--TAGCAAATTTCTCCATACATGCC--AT  1045

seq1  TTGATAG-ATTTTAGT-GAGCACTTAAAAGCAAATGCCTAACTATCTCTT  1098
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TTGATAGAATTTTAGTGGAGCACTTAAAAGCAAATGCCTAACTATCTCTT  1095

seq1  TTCCTGTACTTATAACATGGTATTGATATAAAGCCCCTTCAGACTCTTTT  1148
      || |||||||||| ||||  ||||||||| ||||||||   |||||||||
seq2  TT-CTGTACTTAT-ACAT-CTATTGATAT-AAGCCCCTAAGGACTCTTTT  1141

seq1  GTGACTTTGCTTG  1161
      |||||||||||||
seq2  GTGACTTTGCTTG  1154


seq1: chrX_14163637_14164155
seq2: B6Ng01-180G21.g_584_1103 (reverse)

seq1  GTGCAGAAGATTCAATAGAAAACATCGGCACAACAATTAAAGAAAATGGA  50
      |||||||||||||||||| ||||||  ||||||  || ||||||||| ||
seq2  GTGCAGAAGATTCAATAG-AAACAT-TGCACAATTATCAAAGAAAAT-GA  47

seq1  AAATGC-AAAAAGATCCTAACTCAAA-ATATCCAGGAAATCCAGGACACA  98
      |||||| ||||||||||||||||||| ||| |||||||||||||||||||
seq2  AAATGCAAAAAAGATCCTAACTCAAACATA-CCAGGAAATCCAGGACACA  96

seq1  A-TGAGAAGACCAAAC-CTACGGATAATAGGAGTGGATGAGAATGAAG-A  145
      | ||||||| ||||||  ||| |||||||||||| ||||||||||||| |
seq2  AGTGAGAAGGCCAAACAATACAGATAATAGGAGTAGATGAGAATGAAGAA  146

seq1  TTTTCAACTCAAA-GGACCAGCAAACATCTTCAACAAAATTATTGAAGAA  194
      ||||||||| ||| || ||||| || ||||||||||||||||| ||||||
seq2  TTTTCAACTTAAAGGGCCCAGCTAATATCTTCAACAAAATTATAGAAGAA  196

seq1  AACTTCCCAAATATAAAGAAAGAGATACCTATGAACATACAAGAAGCCTA  244
      |||||||||||| | |||||| |||| || ||||||| ||||||||||||
seq2  AACTTCCCAAATCT-AAGAAA-AGATGCCCATGAACACACAAGAAGCCTA  244

seq1  CAGAACTCCAAAT-AGACTGGACCAGAAAAGAAATTCCTCCCGACACATA  293
      ||||||||||||| ||||||||||||||||||| |||||||| |||||||
seq2  CAGAACTCCAAATAAGACTGGACCAGAAAAGAAGTTCCTCCCAACACATA  294

seq1  ATAATCAGAACAACAAATGCACTAAATAAAGATAGAATACTAAAAGCAGT  343
      ||||||||||||||||||||| ||||||||||||||||| ||| ||||||
seq2  ATAATCAGAACAACAAATGCAGTAAATAAAGATAGAATATTAAGAGCAGT  344

seq1  AAGGGAAAAAGGTCAAGTAACATACAAAGGCAAGCCTATCAGAATTACAC  393
      |||||||||||||||||||| ||| ||||||||| |||||||||||||||
seq2  AAGGGAAAAAGGTCAAGTAAAATATAAAGGCAAGTCTATCAGAATTACAC  394

seq1  CAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTT  444

seq1  ATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGC  493
      ||||||||||  |||||||||||||  || | ||||||| |||| |||||
seq2  ATACAGACACATAGAGAACACAAATGACAACTCAGGCTATTATAACCAGC  494

seq1  CAAACTCTCAATTACCATAGATGGAG  519
      |||||| ||||||||| |||||||||
seq2  CAAACTTTCAATTACCTTAGATGGAG  520


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