MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-181I09
Chromosome	X (Build37)
Map Location	96,054,625 - 96,193,472
singlet/doublet	doublet
Overlap gene	Ophn1, Yipf6, LOC100042932
Upstream gene	Ar, LOC100042324
Downstream gene	Stard8, LOC436219, Efnb1, Pja1, LOC100042947, Pcna-ps1, EG620592, Eda
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ar (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11835 MGI:88064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042324 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042324
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Ophn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94190 MGI:2151070
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Yipf6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77929 MGI:1925179
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042932 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042932
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 25 ESTs, 4 Proteins pseudo : _no_value

name	Stard8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:236920 MGI:2448556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC436219 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:436219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins pseudo : _no_value

name	Efnb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13641 MGI:102708
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pja1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18744 MGI:1101765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042947 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Pcna-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18539 MGI:97504
definition	note : proliferating cell nuclear antigen pseudogene 1 pseudo : _no_value

name	EG620592 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:620592 MGI:3648377
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eda (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13607 MGI:1195272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ar (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129906 GeneID:11835 MGI:88064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : androgen receptor transcript_id : NM_013476.3

name	Ophn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345123 GeneID:94190 MGI:2151070
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oligophrenin 1 transcript_id : NM_052976.3

name	Yipf6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76253919 GeneID:77929 MGI:1925179
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Yip1 domain family, member 6 transcript_id : NM_207633.2

name	Stard8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39841034 GeneID:236920 MGI:2448556
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : START domain containing 8 transcript_id : NM_199018.1

name	Efnb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802568 GeneID:13641 MGI:102708
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ephrin B1 transcript_id : NM_010110.3

name	Pja1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133505553 GeneID:18744 MGI:1101765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : praja1, RING-H2 motif containing transcript_id : NM_008853.3

name	Pja1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133506755 GeneID:18744 MGI:1101765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : praja1, RING-H2 motif containing transcript_id : NM_001083110.1

name	LOC100042947 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271833 GeneID:100042947
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to ribosomal protein L37 transcript_id : XM_001478804.1

name	EG620592 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486868 GeneID:620592 MGI:3648377
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG620592 transcript_id : NM_001081283.1

name	Eda (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893370 GeneID:13607 MGI:1195272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectodysplasin-A transcript_id : NM_010099.2

name	Ar (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304901 CCDS:CCDS30294.1 GeneID:11835 MGI:88064
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] [Evidence IDA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IPI] [Evidence IDA] GO_function : GO:0004882 - androgen receptor activity [Evidence ISS] [Evidence IDA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030521 - androgen receptor signaling pathway [Evidence IDA]; GO:0016049 - cell growth [Evidence ISS]; GO:0050875 - cellular physiological process [Evidence IDA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0008584 - male gonad development [Evidence IMP]; GO:0019102 - male somatic sex determination [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : testicular feminization product : androgen receptor protein_id : NP_038504.1

name	Ophn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16418475 CCDS:CCDS30295.1 GeneID:94190 MGI:2151070
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IDA]; GO:0005096 - GTPase activator activity [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : oligophrenin 1 protein_id : NP_443208.1

name	Yipf6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46519049 CCDS:CCDS30296.1 GeneID:77929 MGI:1925179
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : Yip1 domain family, member 6 protein_id : NP_997516.1

name	Stard8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39841035 CCDS:CCDS30297.1 GeneID:236920 MGI:2448556
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : START domain containing 8 protein_id : NP_950183.1

name	Efnb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753726 CCDS:CCDS30298.1 GeneID:13641 MGI:102708
definition	GO_component : GO:0045121 - lipid raft [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0046875 - ephrin receptor binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0009880 - embryonic pattern specification [Evidence IMP]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001755 - neural crest cell migration [Evidence IMP]; GO:0042102 - positive regulation of T cell proliferation [Evidence IDA] codon_start : 1 note : Cek ligand; Cek5 ligand product : ephrin B1 protein_id : NP_034240.1

name	Pja1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50284539 GeneID:18744 MGI:1101765
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030163 - protein catabolism [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; E3 ubiquitin-protein ligase product : praja1 isoform 2 protein_id : NP_032879.2

name	Pja1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133506756 GeneID:18744 MGI:1101765
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030163 - protein catabolism [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; E3 ubiquitin-protein ligase product : praja1 isoform 1 protein_id : NP_001076579.1

name	LOC100042947 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271834 GeneID:100042947
definition	codon_start : 1 product : similar to ribosomal protein L37 protein_id : XP_001478854.1

name	EG620592 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486869 GeneID:620592 MGI:3648377
definition	codon_start : 1 note : likely orthologue of H. sapiens transmembrane protein 28 (TMEM28) product : predicted gene, EG620592 protein_id : NP_001074752.1

name	Eda (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753712 CCDS:CCDS30299.1 GeneID:13607 MGI:1195272
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007160 - cell-matrix adhesion [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IMP]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0043473 - pigmentation [Evidence IMP]; GO:0042346 - positive regulation of NF-kappaB import into nucleus [Evidence IDA]; GO:0007431 - salivary gland development [Evidence IDA] codon_start : 1 product : ectodysplasin-A protein_id : NP_034229.1

name	LOC100042324 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042324
definition	number : 2 pseudo : _no_value

name	LOC100042324 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042324
definition	number : 1 pseudo : _no_value

name	LOC100042932 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271832 GeneID:100042932
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 25 ESTs, 4 Proteins product : similar to protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudo : _no_value transcript_id : XR_033864.1

name	LOC436219 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271797 GeneID:436219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 11 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_033477.1

clone name	MSMg01-213E20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-291D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446O19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054N14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-181I09.b	B6Ng01-181I09.g
ACC	GA007659	GA007660
length	1,104	1,040
definition	B6Ng01-181I09.b	B6Ng01-181I09.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(96,054,625 - 96,055,730)	(96,192,435 - 96,193,472)
sequence	gaattccaacacagagacaggccaggggaggaaggtcagttggtagagca attctctagcatgtaagaagccgtgggtttgaccatcagcacggtatgaa ctgggtaagctgttgtcaaggattccgatttactggagtgaaagtctcta aaacctaaggaaacacccccaggatggtggtgattgtgctgggctcaatc ttctactgcaccaccaatgacaaagcattctaccactgacttacacgctt atgaacatgtatgatccctgttgatgatagatgcccaattatgctttccc cagcccaagtgaagtcatcagctctgactggtttccaagatgtctctcaa tgttcatttccaaagtagccaacattagtcactatgatagcgttgctaca atttaatagcataaaaatcactttcagagctgtgagtggcactcagtaac agacttcttgcctagcatgcaccaggcattggatttggtccccggaaata cacacatatatgaacaaatacatttaatggaaagtacttagaaattaaat aataagatatctgagaattgcttcaaattaatccaaacccaagagggaag gaacagggcaacagcgatcaataaaacaggatagccataaagtagttcat tgttgacattggatatgggtacacacaggttaattttcatcttctctcca gtttttagtgtattcaaaattttcaactataactgcagaggagggggact tatggtggaaaaccatgaagctggaacaagtgctttcctgaagaaggcca tggcgagaggagtcatggagtatttctgggggttgcttactgagtgtttc catttggagcacttcatctacatgaactaaaaggggaaaatagtaggaaa ctactatttttctcagataaagtaagcaggtttgaaaagcagcagagaca agtgggcaagagaaaattgcagtaattgcaaaagacacagtgctgaaggg aaccctcgcagatgtgccgtcttactgcgtgtgaatgtcaggcaaaagca tgaatgggagctagaagaggacatgcacaggggaagacaaatgtaacagg ctgt	gaattcacactttacagatgaggaaactgagtttcagagaagtgacatat ttttttgttataaatacagcacagttaattcattcacttgcttgtagaca tatgaaggttttttttcccaacttttactactagaataggtattacatat gttcttataggagactgttatgaacatgattttatcactcatgggtaagt gcctaaaaggagaattgttggatcatagatgaaataaaaatatgtttacc attaaaaatggtgacaaatcttatccattgtcacatagaaaaattacagg ctggagtactcataaaagccatctgaacccaaaccctatgcttttacact tgaccctctgctcagacatgacccctaccctagcactgggctagctcgtg ttgcacaggagaatgaagccaagtagacaaagagctttgatctaaaatag aatccaaaaagacaaaagtagagatacgggaaaggtgttatcagagccta ggtgatggtctgttcaagggatttaaaagacctatgggaaaaggtgggtt gaaagatgaattggagaaatagtgatatacatattccagacaggggaaat agtattttcaaaggtctaagaggaggagttcaggaattgcatatgagaac ctttactcagatggaccgtggcaaacagtgcacaaagtagctgtattgaa caaagaaaactctaggtctgccaattaaatttgaattttagaaaggcaaa atatccttcctcagtgtatctgaaattcagtttaactagtttcctatatt ttctatgccaaccccaagggtacataactggtgtgataagggtagattag tttagaaacagatcacagtaggcctccaatgtcaagtgaagtagtaacca gcttgccctcgaatgcatgcctccttgagcttcagtttttttccccatct gtaaatgtgagaacactagattctatccaggcttctaaatggtggtgcat aatttcttttaaaaaatatacatgttgtgatgattaatat
quality values	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chrX_96054625_96055730
seq2: B6Ng01-181I09.b_44_1147

seq1  GAATTCCAACACAGAGACAGGCCAGGGGAGGAAGGTCAGTTGGTAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACAGAGACAGGCCAGGGGAGGAAGGTCAGTTGGTAGAGCA  50

seq1  ATTCTCTAGCATGTAAGAAGCCGTGGGTTTGACCATCAGCACGGTATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAGCATGTAAGAAGCCGTGGGTTTGACCATCAGCACGGTATGAA  100

seq1  CTGGGTAAGCTGTTGTCAAGGATTCCGATTTACTGGAGTGAAAGTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAGCTGTTGTCAAGGATTCCGATTTACTGGAGTGAAAGTCTCTA  150

seq1  AAACCTAAGGAAACACCCCCAGGATGGTGGTGATTGTGCTGGGCTCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAGGAAACACCCCCAGGATGGTGGTGATTGTGCTGGGCTCAATC  200

seq1  TTCTACTGCACCACCAATGACAAAGCATTCTACCACTGACTTACACGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGCACCACCAATGACAAAGCATTCTACCACTGACTTACACGCTT  250

seq1  ATGAACATGTATGATCCCTGTTGATGATAGATGCCCAATTATGCTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATGTATGATCCCTGTTGATGATAGATGCCCAATTATGCTTTCCC  300

seq1  CAGCCCAAGTGAAGTCATCAGCTCTGACTGGTTTCCAAGATGTCTCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAGTGAAGTCATCAGCTCTGACTGGTTTCCAAGATGTCTCTCAA  350

seq1  TGTTCATTTCCAAAGTAGCCAACATTAGTCACTATGATAGCGTTGCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTCCAAAGTAGCCAACATTAGTCACTATGATAGCGTTGCTACA  400

seq1  ATTTAATAGCATAAAAATCACTTTCAGAGCTGTGAGTGGCACTCAGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAGCATAAAAATCACTTTCAGAGCTGTGAGTGGCACTCAGTAAC  450

seq1  AGACTTCTTGCCTAGCATGCACCAGGCATTGGATTTGGTCCCCGGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTTGCCTAGCATGCACCAGGCATTGGATTTGGTCCCCGGAAATA  500

seq1  CACACATATATGAACAAATACATTTAATGGAAAGTACTTAGAAATTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATGAACAAATACATTTAATGGAAAGTACTTAGAAATTAAAT  550

seq1  AATAAGATATCTGAGAATTGCTTCAAATTAATCCAAACCCAAGAGGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATATCTGAGAATTGCTTCAAATTAATCCAAACCCAAGAGGGAAG  600

seq1  GAACAGGGCAACAGCGATCAATAAAACAGGATAGCCATAAAGTAGTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGCAACAGCGATCAATAAAACAGGATAGCCATAAAGTAGTTCAT  650

seq1  TGTTGACATTGGATATGGGTACACACAGGTTAATTTTCATCTTCTCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACATTGGATATGGGTACACACAGGTTAATTTTCATCTTCTCTCCA  700

seq1  GTTTTTAGTGTATTCAAAATTTTCAACTATAACTGCAGAGGAGGGGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGTGTATTCAAAATTTTCAACTATAACTGCAGAGGAGGGGGACT  750

seq1  TATGGTGGAAAACCATGAAGCTGGAACAAGTGCTTTCCTGAAGAAGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGAAAACCATGAAGCTGGAACAAGTGCTTTCCTGAAGAAGGCCA  800

seq1  TGGCGAGAGGAGTCATGGAGTATTTCTGGGGGTTGCTTACTGAGTGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAGAGGAGTCATGGAGTATTTCTGGGGGTTGCTTACTGAGTGTTTC  850

seq1  CATTTGGAGCACTTCATCTACATGAACTAAAAGGGGAAAATAGTAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGAGCACTTCATCTACATGAACTAAAAGGGGAAAATAGTAGGAAA  900

seq1  CTACTA-TTTTCTCAGATAAAAGTAAGCAGGGTTTGAAAAGCAGCAGGAG  949
      |||||| ||||||||||| |||||||||| |||||||||||||||| |||
seq2  CTACTATTTTTCTCAGAT-AAAGTAAGCA-GGTTTGAAAAGCAGCA-GAG  947

seq1  ACAAGTGGGCAAGAGAAAAATTGCAGTAATTGCAAAAGACACAGTGCTGA  999
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAAGTGGGCAAGAG-AAAATTGCAGTAATTGCAAAAGACACAGTGCTGA  996

seq1  AGGGAACCCTCGCAGATGTGGCCGTC-TACTGCGTGTGAGATGTCAGGGC  1048
      ||||||||||||||||||| |||||| |||||||||||| |||||| |||
seq2  AGGGAACCCTCGCAGATGT-GCCGTCTTACTGCGTGTGA-ATGTCA-GGC  1043

seq1  AAAAGGCAGGAA--GGAAGTAGAGAGGGACA-GCAGAGGGGAAGACAAAT  1095
      |||| ||| |||  |||  ||||   ||||| ||| ||||||||||||||
seq2  AAAA-GCATGAATGGGAGCTAGAAGAGGACATGCACAGGGGAAGACAAAT  1092

seq1  G-AACAGGCTGT  1106
      | ||||||||||
seq2  GTAACAGGCTGT  1104

seq1: chrX_96192435_96193472
seq2: B6Ng01-181I09.g_64_1103 (reverse)

seq1  ATATTAATCATCACAACATGTATA-TTTTTAAAAGAAA-TATGCACCA-C  47
      |||||||||||||||||||||||| ||||||||||||| ||||||||| |
seq2  ATATTAATCATCACAACATGTATATTTTTTAAAAGAAATTATGCACCACC  50

seq1  ATTTAGGAAGCCTGGATAGAATCTAGTGTTCTCACATTTACAGATGGGGA  97
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTA-GAAGCCTGGATAGAATCTAGTGTTCTCACATTTACAGATGGGGA  99

seq1  AAAAAACTGAAGCTCAAGGAGGCATGCATTCGAGGGCAAGCTGGTTACTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTGAAGCTCAAGGAGGCATGCATTCGAGGGCAAGCTGGTTACTA  149

seq1  CTTCACTTGACATTGGAGGCCTACTGTGATCTGTTTCTAAACTAATCTAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTCACTTGACATTGGAGGCCTACTGTGATCTGTTTCTAAACTAATCTAC  199

seq1  CCTTATCACACCAGTTATGTACCCTTGGGGTTGGCATAGAAAATATAGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCACACCAGTTATGTACCCTTGGGGTTGGCATAGAAAATATAGGA  249

seq1  AACTAGTTAAACTGAATTTCAGATACACTGAGGAAGGATATTTTGCCTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTTAAACTGAATTTCAGATACACTGAGGAAGGATATTTTGCCTTT  299

seq1  CTAAAATTCAAATTTAATTGGCAGACCTAGAGTTTTCTTTGTTCAATACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTCAAATTTAATTGGCAGACCTAGAGTTTTCTTTGTTCAATACA  349

seq1  GCTACTTTGTGCACTGTTTGCCACGGTCCATCTGAGTAAAGGTTCTCATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTTGTGCACTGTTTGCCACGGTCCATCTGAGTAAAGGTTCTCATA  399

seq1  TGCAATTCCTGAACTCCTCCTCTTAGACCTTTGAAAATACTATTTCCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTCCTGAACTCCTCCTCTTAGACCTTTGAAAATACTATTTCCCCT  449

seq1  GTCTGGAATATGTATATCACTATTTCTCCAATTCATCTTTCAACCCACCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAATATGTATATCACTATTTCTCCAATTCATCTTTCAACCCACCT  499

seq1  TTTCCCATAGGTCTTTTAAATCCCTTGAACAGACCATCACCTAGGCTCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATAGGTCTTTTAAATCCCTTGAACAGACCATCACCTAGGCTCTG  549

seq1  ATAACACCTTTCCCGTATCTCTACTTTTGTCTTTTTGGATTCTATTTTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACCTTTCCCGTATCTCTACTTTTGTCTTTTTGGATTCTATTTTAG  599

seq1  ATCAAAGCTCTTTGTCTACTTGGCTTCATTCTCCTGTGCAACACGAGCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCTCTTTGTCTACTTGGCTTCATTCTCCTGTGCAACACGAGCTA  649

seq1  GCCCAGTGCTAGGGTAGGGGTCATGTCTGAGCAGAGGGTCAAGTGTAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGCTAGGGTAGGGGTCATGTCTGAGCAGAGGGTCAAGTGTAAAA  699

seq1  GCATAGGGTTTGGGTTCAGATGGCTTTTATGAGTACTCCAGCCTGTAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGGTTTGGGTTCAGATGGCTTTTATGAGTACTCCAGCCTGTAATT  749

seq1  TTTCTATGTGACAATGGATAAGATTTGTCACCATTTTTAATGGTAAACAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGTGACAATGGATAAGATTTGTCACCATTTTTAATGGTAAACAT  799

seq1  ATTTTTATTTCATCTATGATCCAACAATTCTCCTTTTAGGCACTTACCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTCATCTATGATCCAACAATTCTCCTTTTAGGCACTTACCCA  849

seq1  TGAGTGATAAAATCATGTTCATAACAGTCTCCTATAAGAACATATGTAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATAAAATCATGTTCATAACAGTCTCCTATAAGAACATATGTAAT  899

seq1  ACCTATTCTAGTAGTAAAAGTTGGGAAAAAAAACCTTCATATGTCTACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTCTAGTAGTAAAAGTTGGGAAAAAAAACCTTCATATGTCTACAA  949

seq1  GCAAGTGAATGAATTAACTGTGCTGTATTTATAACAAAAAAATATGTCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGAATGAATTAACTGTGCTGTATTTATAACAAAAAAATATGTCAC  999

seq1  TTCTCTGAAACTCAGTTTCCTCATCTGTAAAGTGTGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAAACTCAGTTTCCTCATCTGTAAAGTGTGAATTC  1040

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information