MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-181M13
Chromosome	X (Build37)
Map Location	161,989,016 - 161,990,031
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Mospd2, Fancb, LOC627045, Glra2
Downstream gene	LOC100040753, Gemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6
Link	Open Mouse BAC browser

Click to get alignment info.

name	Mospd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76763 MGI:1924013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fancb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237211 MGI:2448558
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC627045 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:627045
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Glra2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237213 MGI:95748
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040753 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040753
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Gemin8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237221 MGI:2384300
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpm6b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14758 MGI:107672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ofd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237222 MGI:1350328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trappc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66226 MGI:1913476
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56382 MGI:1890695
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040795 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	A630018P17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245695 MGI:2685236
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Egfl6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54156 MGI:1858599
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mospd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142356338 GeneID:76763 MGI:1924013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : motile sperm domain containing 2 transcript_id : NM_029730.2

name	Fancb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54020736 GeneID:237211 MGI:2448558
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Fanconi anemia, complementation group B transcript_id : NM_175027.3

name	Glra2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373644 GeneID:237213 MGI:95748
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycine receptor, alpha 2 subunit transcript_id : NM_183427.3

name	LOC100040753 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272509 GeneID:100040753
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : similar to pol protein transcript_id : XM_001475185.1

name	Gemin8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125628630 GeneID:237221 MGI:2384300
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gem (nuclear organelle) associated protein 8 transcript_id : NM_146238.3

name	Gpm6b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130376 GeneID:14758 MGI:107672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycoprotein m6b transcript_id : NM_023122.2

name	Ofd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342288 GeneID:237222 MGI:1350328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oral-facial-digital syndrome 1 gene homolog (human) transcript_id : NM_177429.2

name	Trappc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388246 GeneID:66226 MGI:1913476
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : trafficking protein particle complex 2 transcript_id : NM_025432.2

name	Rab9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9790226 GeneID:56382 MGI:1890695
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB9, member RAS oncogene family transcript_id : NM_019773.1

name	A630018P17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56090649 GeneID:245695 MGI:2685236
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A630018P17 gene transcript_id : NM_001007577.1

name	Egfl6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377711 GeneID:54156 MGI:1858599
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EGF-like-domain, multiple 6 transcript_id : NM_019397.2

name	Mospd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626072 GeneID:76763 MGI:1924013
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : motile sperm domain containing 2 protein_id : NP_084006.1

name	Fancb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54020737 GeneID:237211 MGI:2448558
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : Fanconi anemia, complementation group B protein_id : NP_778192.2

name	Glra2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34556195 GeneID:237213 MGI:95748
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0016934 - glycine-gated chloride channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : glycine receptor, alpha 2 subunit protein_id : NP_906272.1

name	LOC100040753 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272510 GeneID:100040753
definition	codon_start : 1 product : similar to pol protein protein_id : XP_001475235.1

name	Gemin8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559907 GeneID:237221 MGI:2384300
definition	codon_start : 1 product : gem (nuclear organelle) associated protein 8 protein_id : NP_666350.2

name	Gpm6b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963495 CCDS:CCDS30526.1 GeneID:14758 MGI:107672
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : glycoprotein m6b protein_id : NP_075611.1

name	Ofd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28933461 GeneID:237222 MGI:1350328
definition	GO_component : GO:0005932 - basal body [Evidence ISS]; GO:0005813 - centrosome [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0035083 - cilium axoneme biogenesis [Evidence IMP] codon_start : 1 product : oral-facial-digital syndrome 1 gene homolog protein_id : NP_803178.1

name	Trappc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384832 GeneID:66226 MGI:1913476
definition	codon_start : 1 exception : mismatches in translation note : spondyloepiphyseal dysplasia, late; spondyloepiphyseal dysplasia tarda protein product : trafficking protein particle complex 2 protein_id : NP_079708.1

name	Rab9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790227 CCDS:CCDS30527.1 GeneID:56382 MGI:1890695
definition	GO_component : GO:0005770 - late endosome [Evidence ISS]; GO:0005764 - lysosome [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : SID 99 product : RAB9, member RAS oncogene family protein_id : NP_062747.1

name	A630018P17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56090650 GeneID:245695 MGI:2685236
definition	GO_function : GO:0003746 - translation elongation factor activity [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC245695 protein_id : NP_001007578.1

name	Egfl6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506563 CCDS:CCDS30528.1 GeneID:54156 MGI:1858599
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : EGF-like-domain, multiple 6 protein_id : NP_062270.1

name	LOC627045 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:627045
definition	number : 1 pseudo : _no_value

name	LOC627045 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:627045
definition	number : 2 pseudo : _no_value

name	LOC627045 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:627045
definition	number : 3 pseudo : _no_value

name	LOC627045 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:627045
definition	number : 4 pseudo : _no_value

name	LOC100040795 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040795
definition	number : 1 pseudo : _no_value

name	LOC100040795 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040795
definition	number : 2 pseudo : _no_value

clone name	MSMg01-058O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200I23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-181M13.b	B6Ng01-181M13.g
ACC	GA007852	GA007853
length	1,183	1,032
definition	B6Ng01-181M13.b	B6Ng01-181M13.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctttgttcagttctgagccccattttttaatggggttatttgatt ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc ctatctgatttaggataggaaaagatcctttaccaatctgttggtggtct ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca ttaggtcccatttgtcaattctcaatcttacagcacaagccattgctgtt ctgctcaggaatttttcccctgtgcccatatcttcaaggcttttccccac tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc attcttctacatgataacaacctgttgtgccagcaccaattgttgaaaat gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc tctgtagtaaagctttaggtcaggcatggtgattctaccagaggttcttt tatccttgagaagagtttttgctatcctaggttttttgttattccagatg aatttgcaaattgctccttctaatttgttgaagaattgagttggaatttt gatggggattgcattgaatctgtagattgcttatggcaagatagccattt ttacaatgttgatcctgtcaatccatgagcatgggagatctttccatctt ctgagatcttcgttaatttctttcttcagagacttgaagtttttatcata cagatctttcacttccttagttagagtcacgccagatattttatattatt tgtgactattgagagggtgtgtttccctaattcctttttcagcctgttta ttctttgtgtagagaaagccattgactttgtttgagttaattttatattc cagctaatcacacgaaactgttatccagtttaggagttctctggtgattt ttcgggtacataataacctacatatactgctgcaaaaggtatttggacct cctcttcaatggtatccttgaatccctactgtg	gaattcataattgctaacctggaacacaatttgcaaagctttcaactttt agtcggatggtttttggaaaggaaacataaatcacacacttttaaacact ttaggctacttcgggaagcttccttttagtatgacctcaactttggatgt ggcccaccaaatatttaagctaagccaaatagcaagtgattaaattcagg caatgaagctaacattgatgtgtgggagaaagtaaagggcattatcacca aagcccaaggctaactccaataatcatttattaaatataaaaactggaat agtccccctcacatgggaagcctatcctcaccttgttgcactctcctgca agaattttttttcataatcatagtaaatgagaaagcataaaacaaaaact attaaaatagaaaaatatccatattatttcatgtaaagtctcattttttt taacagatgggaagaataaagttaaagggaaaggagcaacttgcctaaga taaatatcctggttagaaagaatgctactgagcagcagaagggaaggaat aatacacactctcaactattaaggaattatgttgacagaaagatgacaat ctccaaaggttacttaatgtacagttttacttatatgacttttttgaaac tacaaaaatatgcgtgaaaataagaaaaagattactattttccagtggtt gaaatcggtataaacatctatttctacaaagagtcggattttttatgtgt gaaaaaaaattatctgtatctatcatgatgacaatatcattgtagtgata ttataatgtaatataatgataattagtattatcaattgtgtaaacaatat gcagcattcctatgtgacattttttaaaaataaatatgaatataaaagta ttacctgtttccattcattctgctgggcctcagggcttcattcctatttc tctcgccctaattctgatcatgttccccttttcacctcctgtccaccagg ttcctccctctcaccctctgacactcagagac
quality values	Open. Hide. 49 31 21 18 58 54 58 62 62 49 62 62 31 18 62 62 62 62 47 49 62 62 62 62 62 62 42 62 62 62 62 62 44 59 59 59 49 49 49 46 62 62 62 59 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 42 54 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 49 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 56 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 54 56 62 62 46 62 62 62 49 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 58 58 54 58 58 58 58 58 58 58 58 54 58 58 58 54 58 54 54 58 45 45 58 58 58 58 54 47 58 58 58 58 58 52 58 58 54 54 52 43 54 52 54 49 58 58 58 58 58 58 58 58 58 54 58 54 54 54 58 58 58 54 58 58 58 52 42 58 54 52 52 45 58 50 54 52 58 58 52 58 46 42 48 58 53 52 51 54 35 52 58 24 58 47 48 51 52 58 58 51 49 52 53 53 49 51 49 51 34 58 51 39 58 40 35 58 54 58 58 41 39 49 46 53 52 58 53 53 36 51 21 58 58 58 58 58 39 32 37 40 46 53 39 52 46 40 58 24 50 51 49 32 58 50 41 49 14 19 44 41 53 51 40 52 47 51 37 53 42 24 38 51 32 58 51 41 25 44 33 40 53 31 58 21 22 58 52 53 34 54 53 54 39 32 49 18 54 54 41 41 49 34 53 54 54 53 28 13 36 52 45 37 53 53 42 49 32 31 53 45 54 32 42 34 41 26 31 51 30 34 33 29 26 33 36 26 34 29 52 45 32 37 31 51 37 39 42 54 54 54 52 33 39 29 33 32 25 7 46 22 32 26 33 33 35 53 32 37 31 19 26 31 30 30 33 52 52 25 32 24 32 53 51 41 29 22 19 16 30 31 51 43 25 29 22 31 31 31 43 37 32 34 30 22 31 24 33 30 9 14 27 31 29 29 18 20 46 41 30 17 47 21 30 30 27 31 24 14 37 16 15 17 34 28 42 31 32 26 31 46 46 46 34 29 22 31 19 22 31 30 21 21 31 33 32 30 46 32 25 16 31 37 32 29 37 25 34 32 18 33 24 31 22 25 24 16 32 26 22 20 24 18 18 16 37 18 25 22 31 32 31 31 14 8 9 25 9 6 43 20 12 5 10 30 24 26 22 10 30 17 14 9 10 4 31 19 15 11 13 9 11 27 18 15 22 14 13 27 24 8 30 7 11 7 23 12 6 7 28 27 9 10 16 10 32 11 30 19 4 5 19 4 5 38 17 15 6 13 18 5 4 9 6 14 38 11 4 3 9 11 22 13 14 27 20 27 23 5 6 5 40 20 14 15 5 6 8 6 5 4 6 20 10 5 9 10 13 6 15 16 9 24 20 21 9 3 11 9 6 11 9 24 16 9 40 11 22 20 16 5 1 4 5 5 9 7 24 5 25 14 11 18 6 7 4 6 16 12 5 7 6 16 6 4 5 3 2 14 28 28 20 15 16 27 22 6 4 10 3 3 3 4 11 4 3 5 9 4 1 3 4 5 8 12 5 8 5 5 12 13 18 11 8 30 22 13 5 11 3 5 3 13 17 4 6 11 5 13 20 18 22 4 2 1 5 13 6 2 2 1 4 5 6 5 9 9 1 5 9 3 4 7 23 30 21 18 4 2 4 1 1 2	Open. Hide. 62 59 43 59 62 59 49 62 62 62 62 62 62 51 44 28 32 51 51 43 49 43 59 62 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 54 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 59 62 62 62 62 62 62 49 62 59 62 62 62 62 59 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 54 54 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 52 58 58 58 58 58 58 58 58 58 58 58 58 54 58 54 58 58 58 58 58 54 54 58 58 58 58 58 58 58 58 47 58 58 54 58 58 54 58 58 47 58 58 58 58 38 58 58 58 46 58 58 58 58 58 54 58 58 58 58 58 58 54 52 58 58 54 51 58 46 58 54 58 58 58 49 42 58 51 46 58 50 58 58 54 52 50 58 58 58 58 51 53 33 58 54 52 53 54 58 58 58 54 53 39 58 58 54 58 50 50 50 51 58 49 43 58 49 58 50 52 52 53 58 51 58 58 51 50 51 54 49 52 53 52 54 51 58 50 58 58 58 58 58 58 49 53 58 52 50 49 52 52 37 58 58 58 40 52 53 41 53 58 53 58 51 53 58 58 50 38 50 58 42 58 36 25 24 39 32 37 24 52 52 49 39 53 45 54 54 44 49 37 31 49 34 54 51 47 49 52 49 54 42 40 49 52 51 38 40 42 45 54 37 47 32 53 52 41 52 39 54 39 52 37 42 47 32 54 45 42 53 40 37 53 40 42 39 23 54 54 54 54 38 42 40 53 40 53 34 32 47 51 49 46 49 52 53 33 28 53 45 32 47 35 53 29 37 35 45 35 34 34 40 40 36 53 40 31 37 41 37 29 35 31 35 31 36 36 30 31 51 24 45 39 43 43 38 30 28 28 51 32 30 37 51 31 51 24 45 42 31 37 38 33 32 34 51 32 31 31 31 29 31 32 37 31 31 31 38 42 31 31 31 33 31 31 42 23 46 23 24 48 41 38 27 32 28 28 31 32 29 38 35 30 29 31 36 33 41 31 27 31 31 31 30 31 16 25 33 48 48 48 48 32 31 48 48 46 30 30 27 46 21 28 27 31 36 29 28 18 17 11 24 44 44 38 27 32 22 22 16 29 19 27 30 38 26 48 21 23 24 21 25 30 18 16 37 33 32 25 31 24 25 34 48 28 19 12 31 32 9 24 43 21 32 23 21 32 27 23 25 18 21 23 29 20 48 26 23 32 32 32 34 26 18 43 26 27 29 19 16 15 22 7 30 34 24 23 31 22 30 16 16 18 48 39 25 9 40 34 20 15 20 11 26 14 24 30 13 22 14 25 25 10 13 17 17 13 18 13 11 21 24 21 8 40 9 9 10 23 26 9 9 40 13 11 16 16 22 28 29 11 5 3 6 28 15 23 10 26 20

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_161989016_161990031
seq2: B6Ng01-181M13.g_63_1074

seq1  GAATTCATAATTGCTAACCTGGAACACAATTTGCAAAGCTTTCAACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATTGCTAACCTGGAACACAATTTGCAAAGCTTTCAACTTTT  50

seq1  AGTCGGATGGTTTTTGGAAAGGAAACATAAATCACACACTTTTAAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGATGGTTTTTGGAAAGGAAACATAAATCACACACTTTTAAACACT  100

seq1  TTAGGCTACTTCGGGAAGCTTCCTTTTAGTATGACCTCAACTTTGGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTACTTCGGGAAGCTTCCTTTTAGTATGACCTCAACTTTGGATGT  150

seq1  GGCCCACCAAATATTTAAGCTAAGCCAAATAGCAAGTGATTAAATTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACCAAATATTTAAGCTAAGCCAAATAGCAAGTGATTAAATTCAGG  200

seq1  CAATGAAGCTAACATTGATGTGTGGGAGAAAGTAAAGGGCATTATCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGCTAACATTGATGTGTGGGAGAAAGTAAAGGGCATTATCACCA  250

seq1  AAGCCCAAGGCTAACTCCAATAATCATTTATTAAATATAAAAACTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAAGGCTAACTCCAATAATCATTTATTAAATATAAAAACTGGAAT  300

seq1  AGTCCCCCTCACATGGGAAGCCTATCCTCACCTTGTTGCACTCTCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCCTCACATGGGAAGCCTATCCTCACCTTGTTGCACTCTCCTGCA  350

seq1  AGAATTTTTTTTCATAATCATAGTAAATGAGAAAGCATAAAACAAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTTTTTCATAATCATAGTAAATGAGAAAGCATAAAACAAAAACT  400

seq1  ATTAAAATAGAAAAATATCCATATTATTTCATGTAAAGTCTCATTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAGAAAAATATCCATATTATTTCATGTAAAGTCTCATTTTTTT  450

seq1  TAACAGATGGGAAGAATAAAGTTAAAGGGAAAGGAGCAACTTGCCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATGGGAAGAATAAAGTTAAAGGGAAAGGAGCAACTTGCCTAAGA  500

seq1  TAAATATCCTGGTTAGAAAGAATGCTACTGAGCAGCAGAAGGGAAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCCTGGTTAGAAAGAATGCTACTGAGCAGCAGAAGGGAAGGAAT  550

seq1  AATACACACTCTCAACTATTAAGGAATTATGTTGACAGAAAGATGACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACACTCTCAACTATTAAGGAATTATGTTGACAGAAAGATGACAAT  600

seq1  CTCCAAAGGTTACTTAATGTACAGTTTTACTTATATGACTTTTTTGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGGTTACTTAATGTACAGTTTTACTTATATGACTTTTTTGAAAC  650

seq1  TACAAAAATATGCGTGAAAATAAGAAAAAGATTACTATTTTCCAGTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAATATGCGTGAAAATAAGAAAAAGATTACTATTTTCCAGTGGTT  700

seq1  GAAATCGGTATAAACATCTATTTCTACAAAGAGTCGGATTTTTTATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCGGTATAAACATCTATTTCTACAAAGAGTCGGATTTTTTATGTGT  750

seq1  GAAAAAAAATTATCTGTATCTATCATGATGACAATATCATTGTAGTGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATTATCTGTATCTATCATGATGACAATATCATTGTAGTGATA  800

seq1  TTATAATGTAATATAATGATAATTAGTATTATCAATTGTGTAAACAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGTAATATAATGATAATTAGTATTATCAATTGTGTAAACAATAT  850

seq1  GCAGCATTCCTATGTGACATTTTTTAAAAATAAATATGAATATAAAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTCCTATGTGACATTTTTTAAAAATAAATATGAATATAAAAGTA  900

seq1  TTACCTGTTTCCATTCATTCTGCTGGGCCTCAGGGCTTCATTCCTATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTTTCCATTCATTCTGCTGGGCCTCAGGGCTTCATTCCTATTTC  950

seq1  TCTCGCCCTAATTCCTGATCATGTTCCCCTTTTCACCTCCCTGTCCCACC  1000
      ||||||||||||| |||||||||||||||||||||||| |||||||   |
seq2  TCTCGCCCTAATT-CTGATCATGTTCCCCTTTTCACCT-CCTGTCC--AC  996

seq1  CAGGTTCCTCCCTCTC  1016
      ||||||||||||||||
seq2  CAGGTTCCTCCCTCTC  1012

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information