BAC Information

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BAC

Clone NameB6Ng01-185A22
ChromosomeX (Build37)
Map Location 91,409,228 - 91,497,094
singlet/doubletdoublet
Overlap geneEif2s3x, Klhl15
Upstream geneRp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx
Downstream geneLOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda, Gm371, 9630042H07Rik, Arhgef9, LOC619688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185A22.bB6Ng01-185A22.g
ACCGA010273GA010274
length1,1281,081
definitionB6Ng01-185A22.b B6Ng01-185A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,495,956 - 91,497,094)(91,409,228 - 91,410,303)
sequence
gaattcaaagtcagtctgagttacagagcaagttccagacaagctcctgt
cttgggctacatagacatatcttccctgtccacaaaaaaatattcaaaag
cttaacacttatggggcatgtggaacatacctataatccaagcactcaag
aagcagaggcaggaggattgcagtatgttccgtgcaagccagggctacat
aacaagacactctaaaaaacaaatttgacaacggattattaaataaatat
ggtataacagataagagtggtgatagcaatctgcctagtctaacaaaggt
tgtttattagatgttaccacaatctactgagtatacctccaaaaataaaa
tacatatgtatttgttcagatgagaaaaagtctggaagaacagataccaa
aatgatgaacacttcttttctttttttaaaagatttatttattattatac
ataaattcactgtagctgacttcagacacaccagaagagggtgtcagatc
tcattatgggtggttgtgagccaccatgtggttgctgggatttgaactca
ggacctttggaagaacagtcagtgcccttacatgctgagccatcttgcca
gcccgacttcttttcttttatacttatctgattaacctcattttttaaga
aacagatgaatactttcttatttttacagtatgtaattttaaagaaaagt
agaaaaaatctacatagttaagaaatgaaactaagtacaattaaaatgag
atctaggagtttgagcatggaggcatatctttaattccaacactaagtga
ggcagaggcaagtgtatctctctgagttcaaggccagccttacctacata
gcaagttctagcctagccagagctccacagtgatacaagacagatctatg
gctcagaagtagagtgtggatttagtattaagccctgggttcaattccaa
gcatcacaaaaaatataatagaaaaataatttagggccaataaggcaaaa
aataaactaacttagtctagtctatttatgaattgagtatttttcccact
acacccactcaagcatctctatctggctcttcttgctcctagactcctct
ctaatgattctcactcttggaatgccct
gaattcagagatctgcctgcctctgccttcccagttccccagtgctggga
ctaaaatagtgtaccaccaccacccagcttcaactgaacttttatataca
attcaaaagtgaaaatttaagaaaaaaataaaaaatgtgtagtaagaatt
aatttaatgaaagaagttgaagatatgtacactgaaaattaacagaatat
taaagagaagtgaaagagggtgaaatacggagagatagtccgcacttagg
aattggaattaccaatactgtcaagatggtaatgccctccaaactgggtc
tagaaatgcattacaattatcatcaaaattctagcagactgttttagaga
aattaccaggttggtcctgaaaatatatgaaaaatcaaggcaaacaagtt
ttacatataaaaagagtcagagatgtagcttagttggagggctcttgcct
accatgtgggaggtcctgggtttcatcctccacactgtcaaacaaaacca
aacctgcaatgcttctagatgaaaacacaggaaaatatctgagatagtga
aggaggcaacgaaatcttagctatgacacaaaaagcattccacaaaggga
aaccattctgtacttcatgagaatgaagttcatgaacttcagaagataca
tttttaaaaaaatgaaagataagactgggagtgtagcttggtggtagact
gtgctttgtgtgggctaggccctgggttcttttttttttttaatattttt
tattattacgtgttttcctcaattacatttccaatgctattccaaaagtc
ccccataccttcccccccccactcccctaccacccactcccatttttttt
ggcccctggcgttcccctgtactggggcatataaagtttgccctgtccaa
tgtaggccctgggttctatatctagccaccaaatcagaaagtaaaaggtc
tgagaatatagaccaatgatgtagtgcttgcctagcacatggtctcatct
gcatcacacaaggacaagcaagagagagacgagacctgagagatacgatg
actgggcagacccacagagtgagatctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_91495956_91497094
seq2: B6Ng01-185A22.b_44_1171 (reverse)

seq1  AGGGCATT-CAAGAGTGGAGAAACCATTAGAGAGGAAGCTAGAAGCAAAG  49
      |||||||| ||||||| ||| || ||||||||||||  |||| |||||  
seq2  AGGGCATTCCAAGAGT-GAG-AATCATTAGAGAGGAGTCTAGGAGCAA--  46

seq1  AAAGAGCAAGATAGAAGATGGCTTGAGGTGGGTGTTAGTGGGAAAAATTA  99
       |||||| |||||| |||| |||||| ||||||| |||||||||||| ||
seq2  GAAGAGCCAGATAG-AGAT-GCTTGA-GTGGGTG-TAGTGGGAAAAA-TA  91

seq1  CTTCAATTCATAAATAGACTAGACTAAGTTAGTTTA-TTTTTGCCTTATT  148
      | |||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  C-TCAATTCATAAATAGACTAGACTAAGTTAGTTTATTTTTTGCCTTA-T  139

seq1  TGGCCCTAATTTATTTTTCTTATTTATATTTTTTGTGATGCTTGGAATTG  198
      ||||||||| ||||||||||   |||||||||||||||||||||||||||
seq2  TGGCCCTAAATTATTTTTCT--ATTATATTTTTTGTGATGCTTGGAATTG  187

seq1  AACCCAGGGCTTAATACTAAATCCACACTCTACTTCTGAGCCATAGATCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGGCTTAATACTAAATCCACACTCTACTTCTGAGCCATAGATCT  237

seq1  GTCTTGTATCACTGTGGAGCTCTGGCTAGGCTAGAACTTGCTATGTAGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTATCACTGTGGAGCTCTGGCTAGGCTAGAACTTGCTATGTAGGT  287

seq1  AAGGCTGGCCTTGAACTCAGAGAGATACACTTGCCTCTGCCTCACTTAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGCCTTGAACTCAGAGAGATACACTTGCCTCTGCCTCACTTAGT  337

seq1  GTTGGAATTAAAGATATGCCTCCATGCTCAAACTCCTAGATCTCATTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAATTAAAGATATGCCTCCATGCTCAAACTCCTAGATCTCATTTTA  387

seq1  ATTGTACTTAGTTTCATTTCTTAACTATGTAGATTTTTTCTACTTTTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTTAGTTTCATTTCTTAACTATGTAGATTTTTTCTACTTTTCTT  437

seq1  TAAAATTACATACTGTAAAAATAAGAAAGTATTCATCTGTTTCTTAAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTACATACTGTAAAAATAAGAAAGTATTCATCTGTTTCTTAAAAA  487

seq1  ATGAGGTTAATCAGATAAGTATAAAAGAAAAGAAGTCGGGCTGGCAAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTTAATCAGATAAGTATAAAAGAAAAGAAGTCGGGCTGGCAAGAT  537

seq1  GGCTCAGCATGTAAGGGCACTGACTGTTCTTCCAAAGGTCCTGAGTTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCATGTAAGGGCACTGACTGTTCTTCCAAAGGTCCTGAGTTCAA  587

seq1  ATCCCAGCAACCACATGGTGGCTCACAACCACCCATAATGAGATCTGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCAACCACATGGTGGCTCACAACCACCCATAATGAGATCTGACA  637

seq1  CCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGAATTTATGTATAATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGAATTTATGTATAATAA  687

seq1  TAAATAAATCTTTTAAAAAAAGAAAAGAAGTGTTCATCATTTTGGTATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATCTTTTAAAAAAAGAAAAGAAGTGTTCATCATTTTGGTATCT  737

seq1  GTTCTTCCAGACTTTTTCTCATCTGAACAAATACATATGTATTTTATTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCCAGACTTTTTCTCATCTGAACAAATACATATGTATTTTATTTT  787

seq1  TGGAGGTATACTCAGTAGATTGTGGTAACATCTAATAAACAACCTTTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTATACTCAGTAGATTGTGGTAACATCTAATAAACAACCTTTGTT  837

seq1  AGACTAGGCAGATTGCTATCACCACTCTTATCTGTTATACCATATTTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGGCAGATTGCTATCACCACTCTTATCTGTTATACCATATTTATT  887

seq1  TAATAATCCGTTGTCAAATTTGTTTTTTAGAGTGTCTTGTTATGTAGCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATCCGTTGTCAAATTTGTTTTTTAGAGTGTCTTGTTATGTAGCCC  937

seq1  TGGCTTGCACGGAACATACTGCAATCCTCCTGCCTCTGCTTCTTGAGTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCACGGAACATACTGCAATCCTCCTGCCTCTGCTTCTTGAGTGC  987

seq1  TTGGATTATAGGTATGTTCCACATGCCCCATAAGTGTTAAGCTTTTGAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTATAGGTATGTTCCACATGCCCCATAAGTGTTAAGCTTTTGAAT  1037

seq1  ATTTTTTTGTGGACAGGGAAGATATGTCTATGTAGCCCAAGACAGGAGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGTGGACAGGGAAGATATGTCTATGTAGCCCAAGACAGGAGCT  1087

seq1  TGTCTGGAACTTGCTCTGTAACTCAGACTGACTTTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAACTTGCTCTGTAACTCAGACTGACTTTGAATTC  1128

seq1: chrX_91409228_91410303
seq2: B6Ng01-185A22.g_65_1145

seq1  GAATTCAGAGATCTGCCTGCCTCTGCCTTCCCAGTTCCCCAGTGCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATCTGCCTGCCTCTGCCTTCCCAGTTCCCCAGTGCTGGGA  50

seq1  CTAAAATAGTGTACCACCACCACCCAGCTTCAACTGAACTTTTATATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAGTGTACCACCACCACCCAGCTTCAACTGAACTTTTATATACA  100

seq1  ATTCAAAAGTGAAAATTTAAGAAAAAAATAAAAAATGTGTAGTAAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAGTGAAAATTTAAGAAAAAAATAAAAAATGTGTAGTAAGAATT  150

seq1  AATTTAATGAAAGAAGTTGAAGATATGTACACTGAAAATTAACAGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATGAAAGAAGTTGAAGATATGTACACTGAAAATTAACAGAATAT  200

seq1  TAAAGAGAAGTGAAAGAGGGTGAAATACGGAGAGATAGTCCGCACTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAAGTGAAAGAGGGTGAAATACGGAGAGATAGTCCGCACTTAGG  250

seq1  AATTGGAATTACCAATACTGTCAAGATGGTAATGCCCTCCAAACTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAATTACCAATACTGTCAAGATGGTAATGCCCTCCAAACTGGGTC  300

seq1  TAGAAATGCATTACAATTATCATCAAAATTCTAGCAGACTGTTTTAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGCATTACAATTATCATCAAAATTCTAGCAGACTGTTTTAGAGA  350

seq1  AATTACCAGGTTGGTCCTGAAAATATATGAAAAATCAAGGCAAACAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCAGGTTGGTCCTGAAAATATATGAAAAATCAAGGCAAACAAGTT  400

seq1  TTACATATAAAAAGAGTCAGAGATGTAGCTTAGTTGGAGGGCTCTTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATAAAAAGAGTCAGAGATGTAGCTTAGTTGGAGGGCTCTTGCCT  450

seq1  ACCATGTGGGAGGTCCTGGGTTTCATCCTCCACACTGTCAAACAAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGGAGGTCCTGGGTTTCATCCTCCACACTGTCAAACAAAACCA  500

seq1  AACCTGCAATGCTTCTAGATGAAAACACAGGAAAATATCTGAGATAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCAATGCTTCTAGATGAAAACACAGGAAAATATCTGAGATAGTGA  550

seq1  AGGAGGCAACGAAATCTTAGCTATGACACAAAAAGCATTCCACAAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAACGAAATCTTAGCTATGACACAAAAAGCATTCCACAAAGGGA  600

seq1  AACCATTCTGTACTTCATGAGAATGAAGTTCATGAACTTCAGAAGATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCTGTACTTCATGAGAATGAAGTTCATGAACTTCAGAAGATACA  650

seq1  TTTTTAAAAAAATGAAAGATAAGACTGGGAGTGTAGCTTGGTGGTAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAAATGAAAGATAAGACTGGGAGTGTAGCTTGGTGGTAGACT  700

seq1  GTGCTTTGTGTGGGCTAGGCCCTGGGTTCTTTTTTTTTTTTAATATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGTGTGGGCTAGGCCCTGGGTTCTTTTTTTTTTTTAATATTTTT  750

seq1  TATTATTACGTGTTTTCCTCAATTACATTTCCAATGCTATTCCAAAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTACGTGTTTTCCTCAATTACATTTCCAATGCTATTCCAAAAGTC  800

seq1  CCCCATACCTT-CCCCCCCCACTCCCCTACCACCCACTCCCATTTTTTT-  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  CCCCATACCTTCCCCCCCCCACTCCCCTACCACCCACTCCCATTTTTTTT  850

seq1  -GGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTG-CCTGTCCAA  896
       | ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCCCTGTCCAA  900

seq1  TGTAGGCCCTGGGTTCTATATCTAG-CACCAAATCAGAAAAGTAAAAGGT  945
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TGTAGGCCCTGGGTTCTATATCTAGCCACCAAATCAG-AAAGTAAAAGGT  949

seq1  CTGAGAATATAGACCAATGATGTAGTGCTTGCCTAGCACATGGTCTCATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATATAGACCAATGATGTAGTGCTTGCCTAGCACATGGTCTCATC  999

seq1  TCCATCACACAAAGACAAGCAAGAGAGAGACAGAGA-CAGAGAGATAAGA  1044
      | |||||||||| |||||||||||||||||| |||| | |||||||| ||
seq2  TGCATCACACAAGGACAAGCAAGAGAGAGAC-GAGACCTGAGAGATACGA  1048

seq1  AGACAGGG-AGACACACAGAGAGAGATCTAAAA  1076
       ||| ||| |||| ||||||| |||||||||||
seq2  TGACTGGGCAGACCCACAGAGTGAGATCTAAAA  1081