BAC Information

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BAC

Clone NameB6Ng01-186M08
ChromosomeX (Build37)
Map Location 55,577,191 - 55,697,246
singlet/doubletdoublet
Overlap genenone
Upstream geneArhgef6, Rbmx, Snord61, Gm364, Gpr101, Aldoa-ps, EG666441, LOC666447, Zic3
Downstream geneLOC631581, LOC631621, 4930550L24Rik, Fgf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186M08.bB6Ng01-186M08.g
ACCGA011527GA011528
length7141,117
definitionB6Ng01-186M08.b B6Ng01-186M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,577,191 - 55,577,904)(55,696,124 - 55,697,246)
sequence
gaattcaatggcagtttttattgcatgaggccagaaaaagaatttcacag
acttgtggaagagtacaatatgagaaaatctaggatggaatagggaaaag
agacactatcatcaaaggagtttgtccttaggtattgattacaggttatc
caagagactaacacagggtgacttataggaatgactctttttgtgttata
cttcaaacccaagtgtcttagagtttctgttgctctgaagagacatcatg
accaaggcaactcatataaagaaaatatttcattggggctggcttatatt
tccagaggttcagtccattatcatcatggcagaaagcatggctgcaagct
ggctgtcttggtgctggagtagcagagagttctacatcctgatagaaagg
cagccagcaggagagtctcttctgccctggggggagtttgagcaatagga
tttgtcaaagcccacctacacagtgacacacttcctccaacaaggtcaca
cctattccaacaaggccacacctaaaaatgccacttcccataggccaagc
attttcaaactaccacaccaaacctacaaccaactcccaaacaaacctat
aaatatagtacttttcacacttagaaaatgagtttctctttattttcttc
atgaagagtttttatagtatagaatggtgtttattaagggcatagggagg
ggaattaagagggt

gaattcactcagagcatgtgaagaacagcttctattcagccttccctgtc
tggagactcagttggaaggctcaatggctgggagcagagatcatctgaag
gtttattcatttgcctgtttgttgattcatgctgactatcaacaaggggt
cttgattctgctccacatgtcttaccccatgtagtgtctttatgagaaaa
attttgtttcctcacagcttggtggcttgcttccaatggttccacaatag
gtaacaagagagagagggaaaatggagatggggaaaggagggaaagaaga
aaggattaagagagagaactagacaaaggccataccactttttctaatct
atccaacattctcatagcatccggtctattgtattttcttggtggcagca
gttacgaatactgtttgaagataaaatttaaaaattgtgactccacttct
ttatagctaaaatgatgggacaaatagatgtgtgagacaatcctaagaaa
tacactatgacataacaaggaatattagccttcagtaaatacttgcatgg
ctctactggacctgctggacctcggtactttgcagacatcagtaatgaac
tagagcactatagctcaaaagtctaggccaactaagttgttccttgcaac
ttaccaagcaaatctgccttcatgattttccttagagactgcaagtgtta
ttctcaagtgaaggcatcttgccatctcagagataaacacatgtccactt
aagtttcccctgccactcttgagcctcaaggcattctgggaaaatcccat
cactttaatgaaaatgttcaacttttaactaagtcctctgtatctgacaa
atacttagctattttcggggcttttcgtttctaactaccactgactctcc
aatgtaataagtgaattcttatactattttcatttcttatttacccagca
tgtgtttcttggaatatctactatatgacatggactgttctagcacttga
tataattatattattgaacaaggtagacattgtccagtcctcctctgagt
cctcagacagttataagaaactaaatgaaatagccattagtctcctgtgc
aatgggttatgataaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_55577191_55577904
seq2: B6Ng01-186M08.b_43_756

seq1  GAATTCAATGGCAGTTTTTATTGCATGAGGCCAGAAAAAGAATTTCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCAGTTTTTATTGCATGAGGCCAGAAAAAGAATTTCACAG  50

seq1  ACTTGTGGAAGAGTACAATATGAGAAAATCTAGGATGGAATAGGGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGAAGAGTACAATATGAGAAAATCTAGGATGGAATAGGGAAAAG  100

seq1  AGACACTATCATCAAAGGAGTTTGTCCTTAGGTATTGATTACAGGTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTATCATCAAAGGAGTTTGTCCTTAGGTATTGATTACAGGTTATC  150

seq1  CAAGAGACTAACACAGGGTGACTTATAGGAATGACTCTTTTTGTGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACTAACACAGGGTGACTTATAGGAATGACTCTTTTTGTGTTATA  200

seq1  CTTCAAACCCAAGTGTCTTAGAGTTTCTGTTGCTCTGAAGAGACATCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACCCAAGTGTCTTAGAGTTTCTGTTGCTCTGAAGAGACATCATG  250

seq1  ACCAAGGCAACTCATATAAAGAAAATATTTCATTGGGGCTGGCTTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGCAACTCATATAAAGAAAATATTTCATTGGGGCTGGCTTATATT  300

seq1  TCCAGAGGTTCAGTCCATTATCATCATGGCAGAAAGCATGGCTGCAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTTCAGTCCATTATCATCATGGCAGAAAGCATGGCTGCAAGCT  350

seq1  GGCTGTCTTGGTGCTGGAGTAGCAGAGAGTTCTACATCCTGATAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTTGGTGCTGGAGTAGCAGAGAGTTCTACATCCTGATAGAAAGG  400

seq1  CAGCCAGCAGGAGAGTCTCTTCTGCCCTGGGGGGAGTTTGAGCAATAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCAGGAGAGTCTCTTCTGCCCTGGGGGGAGTTTGAGCAATAGGA  450

seq1  TTTGTCAAAGCCCACCTACACAGTGACACACTTCCTCCAACAAGGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAAGCCCACCTACACAGTGACACACTTCCTCCAACAAGGTCACA  500

seq1  CCTATTCCAACAAGGCCACACCTAAAAATGCCACTTCCCATAGGCCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCCAACAAGGCCACACCTAAAAATGCCACTTCCCATAGGCCAAGC  550

seq1  ATTTTCAAACTACCACACCAAACCTACAACCAACTCCCAAACAAACCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAACTACCACACCAAACCTACAACCAACTCCCAAACAAACCTAT  600

seq1  AAATATAGTACTTTTCACACTTAGAAAATGAGTTTCTCTTTATTTTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGTACTTTTCACACTTAGAAAATGAGTTTCTCTTTATTTTCTTC  650

seq1  ATGAAGAGTTTTTATAGTATAGAATGGTGTTTATTAAGGGCATAGGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGTTTTTATAGTATAGAATGGTGTTTATTAAGGGCATAGGGAGG  700

seq1  GGAATTAAGAGGGT  714
      ||||||||||||||
seq2  GGAATTAAGAGGGT  714


seq1: chrX_55696124_55697246
seq2: B6Ng01-186M08.g_64_1180 (reverse)

seq1  TCTTATCATAACACA-TGCACAGGGAAGACTAATTGCTTATTTCATTTTT  49
      |||||||||||| || ||||||||  |||||||| || |||||||  |||
seq2  TCTTATCATAACCCATTGCACAGG--AGACTAATGGC-TATTTCA--TTT  45

seq1  AGTTTCTTATACTTGTCTGAGACCTCAGA-GAGGGCTGGAACAATGTCTA  98
      |||||||||||  ||||||||  |||||| |||| |||| ||||||||||
seq2  AGTTTCTTATAACTGTCTGAGGACTCAGAGGAGGACTGG-ACAATGTCTA  94

seq1  CCTTGTTCATAATTATAATTATAATCCAAGTGCTTAGAACAGTCCATGTC  148
      |||||||||  | ||||||||||   ||||||| ||||||||||||||||
seq2  CCTTGTTCAATAATATAATTATA--TCAAGTGC-TAGAACAGTCCATGTC  141

seq1  ATATAGTAGATATT-CAAGAAACACATGCTGGGTAAATAAGAAATGAAAA  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATATAGTAGATATTCCAAGAAACACATGCTGGGTAAATAAGAAATGAAAA  191

seq1  TAGTATAAGAATTCACTTATTACATTGGAGAGTCAGTGGTAGTTAGAAAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAGAATTCACTTATTACATTGGAGAGTCAGTGGTAGTTAGAAAC  241

seq1  GAAAAGCCCCGAAAATAGCTAAGTATTTGTCAGATACAGAGGACTTAGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCCCGAAAATAGCTAAGTATTTGTCAGATACAGAGGACTTAGTT  291

seq1  AAAAGTTGAACATTTTCATTAAAGTGATGGGATTTTCCCAGAATGCCTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGAACATTTTCATTAAAGTGATGGGATTTTCCCAGAATGCCTTG  341

seq1  AGGCTCAAGAGTGGCAGGGGAAACTTAAGTGGACATGTGTTTATCTCTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAAGAGTGGCAGGGGAAACTTAAGTGGACATGTGTTTATCTCTGA  391

seq1  GATGGCAAGATGCCTTCACTTGAGAATAACACTTGCAGTCTCTAAGGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAAGATGCCTTCACTTGAGAATAACACTTGCAGTCTCTAAGGAAA  441

seq1  ATCATGAAGGCAGATTTGCTTGGTAAGTTGCAAGGAACAACTTAGTTGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAAGGCAGATTTGCTTGGTAAGTTGCAAGGAACAACTTAGTTGGC  491

seq1  CTAGACTTTTGAGCTATAGTGCTCTAGTTCATTACTGATGTCTGCAAAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTTTGAGCTATAGTGCTCTAGTTCATTACTGATGTCTGCAAAGT  541

seq1  ACCGAGGTCCAGCAGGTCCAGTAGAGCCATGCAAGTATTTACTGAAGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGGTCCAGCAGGTCCAGTAGAGCCATGCAAGTATTTACTGAAGGCT  591

seq1  AATATTCCTTGTTATGTCATAGTGTATTTCTTAGGATTGTCTCACACATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTTGTTATGTCATAGTGTATTTCTTAGGATTGTCTCACACATC  641

seq1  TATTTGTCCCATCATTTTAGCTATAAAGAAGTGGAGTCACAATTTTTAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCCCATCATTTTAGCTATAAAGAAGTGGAGTCACAATTTTTAAA  691

seq1  TTTTATCTTCAAACAGTATTCGTAACTGCTGCCACCAAGAAAATACAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTCAAACAGTATTCGTAACTGCTGCCACCAAGAAAATACAATA  741

seq1  GACCGGATGCTATGAGAATGTTGGATAGATTAGAAAAAGTGGTATGGCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGATGCTATGAGAATGTTGGATAGATTAGAAAAAGTGGTATGGCCT  791

seq1  TTGTCTAGTTCTCTCTCTTAATCCTTTCTTCTTTCCCTCCTTTCCCCATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGTTCTCTCTCTTAATCCTTTCTTCTTTCCCTCCTTTCCCCATC  841

seq1  TCCATTTTCCCTCTCTCTCTTGTTACCTATTGTGGAACCATTGGAAGCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCCCTCTCTCTCTTGTTACCTATTGTGGAACCATTGGAAGCAA  891

seq1  GCCACCAAGCTGTGAGGAAACAAAATTTTTCTCATAAAGACACTACATGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAAGCTGTGAGGAAACAAAATTTTTCTCATAAAGACACTACATGG  941

seq1  GGTAAGACATGTGGAGCAGAATCAAGACCCCTTGTTGATAGTCAGCATGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGACATGTGGAGCAGAATCAAGACCCCTTGTTGATAGTCAGCATGA  991

seq1  ATCAACAAACAGGCAAATGAATAAACCTTCAGATGATCTCTGCTCCCAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAACAGGCAAATGAATAAACCTTCAGATGATCTCTGCTCCCAGC  1041

seq1  CATTGAGCCTTCCAACTGAGTCTCCAGACAGGGAAGGCTGAATAGAAGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCCTTCCAACTGAGTCTCCAGACAGGGAAGGCTGAATAGAAGCT  1091

seq1  GTTCTTCACATGCTCTGAGTGAATTC  1123
      ||||||||||||||||||||||||||
seq2  GTTCTTCACATGCTCTGAGTGAATTC  1117


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