BAC Information

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BAC

Clone NameB6Ng01-187E10
ChromosomeX (Build37)
Map Location 143,576,455 - 143,686,307
singlet/doubletdoublet
Overlap geneHtr2c
Upstream geneLOC100039558, EG666730, EG245663
Downstream geneIl13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863, EG623995, EG624023, LOC666184, LOC100039511, LOC666812, LOC100039519, LOC434864, EG624096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187E10.bB6Ng01-187E10.g
ACCGA011895GA011896
length974993
definitionB6Ng01-187E10.b B6Ng01-187E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,576,455 - 143,577,428)(143,685,320 - 143,686,307)
sequence
tctcttgtgcagtgagtcaccaattcaatcagaaagccattggtaatcaa
tataactatcatgcccctattgtactgatagtcacaacttggtacttact
aatatcatgcattatataatcaatacaataatacactatcaccaattcca
cagatattttctttcttttggctccttataatgccaacattttaccaatt
gttttatattctttttggatattcctagaatctatattcttgacttttaa
cttttataccttatcttctactggccagtagccccaaataaggaaaaatc
tacctaatcttgaagatgggattcccactttgaatcacaaagtatgtctc
cttcaagatgtatctggtcacctttaggaatattcaggggggaaatgtgg
ctttcatcttgttagagcacgtgttaaattgttcagaggaatatccattg
aagtacaaaatacccctcaaatacggggaagatgttcttacaataattca
agctcttttaaattgggtgtccgggggttcatctaggtaattctcatggg
caaacatttctacaaaactggtactttttttgtttgttttgttttgtttt
gttttgttttgttttgttttgttttgttttttgtttttgtttttgttttg
ttttgttttgttttgcttttatctttctcattgctctattctttttgaga
tgagatctggacaggtggacttctttgctacttctacatgtgatgtggac
agggcaagttggagagaagagaggatgtgagaggtctaagttgggtgaac
agagcagatttggctgggatggaaaggtgagatgtagcatgggaaaggcc
tgcagcttagttttaggcaggatgagtcctgacagacaacccataattag
ttgtggcacaggcagtgttgctcagattgggcctgggctctgatttgaag
ccagattaaatctgtcttgttggg

gaattcatatctagagctgtggtcagtcttgtaagtcagagacagatttt
actgccactgggtagtagaatgtaaaggtagaggatctgtggggagttaa
atggtgaacaaaatgttgaaatcatagaaactagaatatattctgttcaa
gcaagtgctcatcaaattcaatgtctgacagcaaatactgcctagctatc
tgtctaaactattcttcaaagactgtgtgtcaaacagttttggaaagtat
aaacacaagagacaagccaatctaaactaaggccttagggaacttcattc
ccaaatagtcatggtcattgcttttagggaagtgaagttagttcttattg
gagaatagagtaatctaagtgccaaaataattccccaaataatgtagcca
agaaagtaactttttctctaatgacacactacattggaatcactttctcc
cctgtactcttcccttcttgatttctggttttacagtaaaagttcaaatg
aaaaagaaaaaagtttaggcctagtttttcagagaatttgccaatattgg
gatctctgaatattttctcctttccgaagtctcacatgagaatctcagct
cccatgtgcacatggaaaccataagtaaattcacaaagacatcaaaatgg
gagaggagagttgaagggaagtcgaggctcagagggactgggaggaatga
taagagatggtgatgaggtaaaaataatcaagcacattttgttcacacac
acaatacgcatatacacagactacacacacacacacacacacacacacat
gaaattgccaaaaaaagagaagctgagtttagactgcagcacctgtgcct
gtatccccagtgtagaaggaggcaaaactggaggatcactggggtctgag
tccaccaagcctagttccaggctcagtgatatgtattgtttcaggtgaat
tctttagagaagggggatggggagttatggtggaggaggaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_143576455_143577428
seq2: B6Ng01-187E10.b_55_1028

seq1  TCTCTTGTGCAGTGAGTCACCAATTCAATCAGAAAGCCATTGGTAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTGCAGTGAGTCACCAATTCAATCAGAAAGCCATTGGTAATCAA  50

seq1  TATAACTATCATGCCCCTATTGTACTGATAGTCACAACTTGGTACTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTATCATGCCCCTATTGTACTGATAGTCACAACTTGGTACTTACT  100

seq1  AATATCATGCATTATATAATCAATACAATAATACACTATCACCAATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATGCATTATATAATCAATACAATAATACACTATCACCAATTCCA  150

seq1  CAGATATTTTCTTTCTTTTGGCTCCTTATAATGCCAACATTTTACCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTTCTTTCTTTTGGCTCCTTATAATGCCAACATTTTACCAATT  200

seq1  GTTTTATATTCTTTTTGGATATTCCTAGAATCTATATTCTTGACTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATATTCTTTTTGGATATTCCTAGAATCTATATTCTTGACTTTTAA  250

seq1  CTTTTATACCTTATCTTCTACTGGCCAGTAGCCCCAAATAAGGAAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATACCTTATCTTCTACTGGCCAGTAGCCCCAAATAAGGAAAAATC  300

seq1  TACCTAATCTTGAAGATGGGATTCCCACTTTGAATCACAAAGTATGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAATCTTGAAGATGGGATTCCCACTTTGAATCACAAAGTATGTCTC  350

seq1  CTTCAAGATGTATCTGGTCACCTTTAGGAATATTCAGGGGGGAAATGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGATGTATCTGGTCACCTTTAGGAATATTCAGGGGGGAAATGTGG  400

seq1  CTTTCATCTTGTTAGAGCACGTGTTAAATTGTTCAGAGGAATATCCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTTGTTAGAGCACGTGTTAAATTGTTCAGAGGAATATCCATTG  450

seq1  AAGTACAAAATACCCCTCAAATACGGGGAAGATGTTCTTACAATAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAAATACCCCTCAAATACGGGGAAGATGTTCTTACAATAATTCA  500

seq1  AGCTCTTTTAAATTGGGTGTCCGGGGGTTCATCTAGGTAATTCTCATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTTAAATTGGGTGTCCGGGGGTTCATCTAGGTAATTCTCATGGG  550

seq1  CAAACATTTCTACAAAACTGGTACTTTTTTTGTTTGTTTTGTTTTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTTCTACAAAACTGGTACTTTTTTTGTTTGTTTTGTTTTGTTTT  600

seq1  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTGTTTTTGTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTGTTTTTGTTTTG  650

seq1  TTTTGTTTTGTTTTGCTTTTATCTTTCTCATTGCTCTATTCTTTTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGCTTTTATCTTTCTCATTGCTCTATTCTTTTTGAGA  700

seq1  TGAGATCTGGACAGGTGGACTTCTTTGCTACTTCTACATGTGATGTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTGGACAGGTGGACTTCTTTGCTACTTCTACATGTGATGTGGAC  750

seq1  AGGGCAAGTTGGAGAGAAGAGAGGATGTGAGAGGTCTAAGTTGGGTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAGTTGGAGAGAAGAGAGGATGTGAGAGGTCTAAGTTGGGTGAAC  800

seq1  AGAGCAGATTTGGCT-GGATGGAAAGGTGAGATGTAGCATGGGAAAGGCC  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAGCAGATTTGGCTGGGATGGAAAGGTGAGATGTAGCATGGGAAAGGCC  850

seq1  TGCAGCTTAGGTTTTAGGCAGGATGAGTCCTGACAGACACCCAGAAATTA  899
      ||||||||| ||||||||||||||||||||||||||||| ||   |||||
seq2  TGCAGCTTA-GTTTTAGGCAGGATGAGTCCTGACAGACAACCCATAATTA  899

seq1  GTTGTGGCACAGGCAGTGTTGGCTAGATTGGGCCTGGGCTCTGATTTGAA  949
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  GTTGTGGCACAGGCAGTGTTGCTCAGATTGGGCCTGGGCTCTGATTTGAA  949

seq1  GCCAGATTAGATCTGTCTTGTTGGG  974
      ||||||||| |||||||||||||||
seq2  GCCAGATTAAATCTGTCTTGTTGGG  974


seq1: chrX_143685320_143686307
seq2: B6Ng01-187E10.g_66_1058 (reverse)

seq1  ACCTCCTCCTC--CCATTACT-CCCAT-CCCCTTCTCTAAAGAATTCACC  46
      |||||||||||  |||| ||| ||||| ||||||||||||||||||||||
seq2  ACCTCCTCCTCCACCATAACTCCCCATCCCCCTTCTCTAAAGAATTCACC  50

seq1  TGAAACAATACATATCACTGAGCCTGGAACTAGGC-TGGTGGACTCAGAC  95
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAAACAATACATATCACTGAGCCTGGAACTAGGCTTGGTGGACTCAGAC  100

seq1  CCCAGTGATCCTCCAGTTTTGCCTCCTTCTACACTGGGGATACAGGCACA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGATCCTCCAGTTTTGCCTCCTTCTACACTGGGGATACAGGCACA  150

seq1  GGTGCTGCAGTCTAAACTCAGCTTCTCTTTTTTTGGCAATTTCATGTGTG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGCAGTCTAAACTCAGCTTCTCTTTTTTTGGCAATTTCATGTGTG  200

seq1  TGTGTGTGTGTGTGTGTGTGTAGTCTGTGTATATGCGTATTGTGTGTGTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTAGTCTGTGTATATGCGTATTGTGTGTGTG  250

seq1  AACAAAATGTGCTTGATTATTTTTACCTCATCACCATCTCTTATCATTCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGTGCTTGATTATTTTTACCTCATCACCATCTCTTATCATTCC  300

seq1  TCCCAGTCCCTCTGAGCCTCGACTTCCCTTCAACTCTCCTCTCCCATTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCCCTCTGAGCCTCGACTTCCCTTCAACTCTCCTCTCCCATTTT  350

seq1  GATGTCTTTGTGAATTTACTTATGGTTTCCATGTGCACATGGGAGCTGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTTGTGAATTTACTTATGGTTTCCATGTGCACATGGGAGCTGAG  400

seq1  ATTCTCATGTGAGACTTCGGAAAGGAGAAAATATTCAGAGATCCCAATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATGTGAGACTTCGGAAAGGAGAAAATATTCAGAGATCCCAATAT  450

seq1  TGGCAAATTCTCTGAAAAACTAGGCCTAAACTTTTTTCTTTTTCATTTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATTCTCTGAAAAACTAGGCCTAAACTTTTTTCTTTTTCATTTGA  500

seq1  ACTTTTACTGTAAAACCAGAAATCAAGAAGGGAAGAGTACAGGGGAGAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACTGTAAAACCAGAAATCAAGAAGGGAAGAGTACAGGGGAGAAA  550

seq1  GTGATTCCAATGTAGTGTGTCATTAGAGAAAAAGTTACTTTCTTGGCTAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCAATGTAGTGTGTCATTAGAGAAAAAGTTACTTTCTTGGCTAC  600

seq1  ATTATTTGGGGAATTATTTTGGCACTTAGATTACTCTATTCTCCAATAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGGGGAATTATTTTGGCACTTAGATTACTCTATTCTCCAATAAG  650

seq1  AACTAACTTCACTTCCCTAAAAGCAATGACCATGACTATTTGGGAATGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACTTCACTTCCCTAAAAGCAATGACCATGACTATTTGGGAATGAA  700

seq1  GTTCCCTAAGGCCTTAGTTTAGATTGGCTTGTCTCTTGTGTTTATACTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTAAGGCCTTAGTTTAGATTGGCTTGTCTCTTGTGTTTATACTTT  750

seq1  CCAAAACTGTTTGACACACAGTCTTTGAAGAATAGTTTAGACAGATAGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTGTTTGACACACAGTCTTTGAAGAATAGTTTAGACAGATAGCT  800

seq1  AGGCAGTATTTGCTGTCAGACATTGAATTTGATGAGCACTTGCTTGAACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTATTTGCTGTCAGACATTGAATTTGATGAGCACTTGCTTGAACA  850

seq1  GAATATATTCTAGTTTCTATGATTTCAACATTTTGTTCACCATTTAACTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATTCTAGTTTCTATGATTTCAACATTTTGTTCACCATTTAACTC  900

seq1  CCCACAGATCCTCTACCTTTACATTCTACTACCCAGTGGCAGTAAAATCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGATCCTCTACCTTTACATTCTACTACCCAGTGGCAGTAAAATCT  950

seq1  GTCTCTGACTTACAAGACTGACCACAGCTCTAGATATGAATTC  988
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGACTTACAAGACTGACCACAGCTCTAGATATGAATTC  993


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