BAC Information

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BAC

Clone NameB6Ng01-189B13
ChromosomeX (Build37)
Map Location 62,858,835 - 62,859,962
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040011, Ctag2
Downstream geneLOC671840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189B13.bB6Ng01-189B13.g
ACCGA013212GA013213
length1,2091,134
definitionB6Ng01-189B13.b B6Ng01-189B13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgtatccagtaataagtgtgtatatatatatatatatatata
tatatatatatgattgaatagtgcctcttcacccccacacacaccaaaaa
aaaaaaaaaaaatacctacccagattctgatttgttaataagatctttgc
agttgtgattaagattcctcagatggcattatcttagattatggaacttt
gcaagtaaagggagaaagtcttgggtatagttatctaaataagaaagctg
tgtgaaagcagaagcaaaaatgggaatgatatatccccaagccaaggaaa
ctggattgctggagataagcagtatctaaaactttaactagagccttcaa
agactatgaccctgcatagagttttacttttgaaatctactttttagaac
ttcaaaagaataaatttgttttgtgtgtgtgttatgctattttgtcttga
tattttaatatgttaattttaaagaactaagaaaataagttcagtttttt
caaatacacactgaacaatcaatcaagaatattctggcgatcttctatcc
caggtctctcagagaccagtcctcacaggagagcacactgcctgcaaaag
caacagagattcctggtcagggtccctttgagccagtcctgtcagccagg
aggcagagctgatcctcagacctctgtgtaccttcgccaccagaggagag
ttggcctccagggaaggctgtaaccccaggactcaggcaagatctttatc
ttctatcacaggttctctcagagatcagcccacacaggagagcatgcggg
ctgtaagaagcaattagagcttctttggacagggtctctttttggccttt
catcttagccagggaggcagagctgatccctcaaccctcttgtgccacct
tccctaccacaggagagcttgcccttgcagtgagtgctctgccttggcca
ctttagaaagagttggactcctaaggagtcctgacagaagcctaacagat
tgacaggagggaaaagttcctacctagagacagcttagatcattcttaac
acccgagaatatagaaagatttggattaaaaatcaataccctcagggtga
ttgggtagaggaatttaagaaggactttaaatatactaattactctgaaa
ttacaggagaaccactgtcttaaattggggtgaaatgtccattttatgac
cataacaat
gaattcagtttttctatattcaatatcataaatttaatgatattccttca
taattgaattttattaaattcagaagctgtgttcttcatagactttgata
tttataattctaccagtcttcccacaaactaagggatggataaaataaaa
atcatattcctaaaatcagatgatgcatagtcaagactcaaactattcaa
ggaaattcaaattttaattcactttctgatgcatcaatacaacaattggg
ttcatttgtatttgaaatatgccaggataatactctggtaataaggtaag
aagcccttgaagagtgatcatcagaggggtgttttgcatttcataactag
caatgagattattttaaagttaaacatgccaaagttaaagttaagaaagt
taaacaaaaaaggtgaaggaaagagtacagataattaatatggttgaaaa
cttccattcagtaaagacttttgtctcttcaaaaacttaatatgaaataa
ctctgtgtgactttaagaaatacatgacacttaagatgtgtttttaatta
aagaataaaaatatacagaacaagggatgtcataataagttcaagagaat
ggaaaagcagcaacttatactctaaaaacaatgcaaaaaattaaagacaa
gcctatttttaaataaatgttaaagaaattaaaataaatttaaacaagag
taagtaagtttcactgattgagtagaagactaaggtatacaatgactcag
taaagaggtaagtattatctctgaaacatatccctgacttttttctttaa
aataattttaatcactttgctcaagatctttaaaacttcaaaactgctca
agaattataatgagtaaatccatctttattagaggatgccacacagtcaa
cagattatgtgacgtttgaatatcattgatttagataagggtacatcttg
tataattgggaattagttgatacccagtatctttgcttctgaaaagatat
gcaatataggaaatactatatttcaactacatggtgaattaaaaaataga
gtgaaggtaacaaatccaaaagacatgcatggcaatgttactcactgatt
aatgacattagaagagatgtacaggacacccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_62858835_62859962
seq2: B6Ng01-189B13.g_67_1200

seq1  GAATTCAGTTTTTCTATATTCAATATCATAAATTTAATGATATTCCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTTCTATATTCAATATCATAAATTTAATGATATTCCTTCA  50

seq1  TAATTGAATTTTATTAAATTCAGAAGCTGTGTTCTTCATAGACTTTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAATTTTATTAAATTCAGAAGCTGTGTTCTTCATAGACTTTGATA  100

seq1  TTTATAATTCTACCAGTCTTCCCACAAACTAAGGGATGGATAAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATTCTACCAGTCTTCCCACAAACTAAGGGATGGATAAAATAAAA  150

seq1  ATCATATTCCTAAAATCAGATGATGCATAGTCAAGACTCAAACTATTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTCCTAAAATCAGATGATGCATAGTCAAGACTCAAACTATTCAA  200

seq1  GGAAATTCAAATTTTAATTCACTTTCTGATGCATCAATACAACAATTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCAAATTTTAATTCACTTTCTGATGCATCAATACAACAATTGGG  250

seq1  TTCATTTGTATTTGAAATATGCCAGGATAATACTCTGGTAATAAGGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTATTTGAAATATGCCAGGATAATACTCTGGTAATAAGGTAAG  300

seq1  AAGCCCTTGAAGAGTGATCATCAGAGGGGTGTTTTGCATTTCATAACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTTGAAGAGTGATCATCAGAGGGGTGTTTTGCATTTCATAACTAG  350

seq1  CAATGAGATTATTTTAAAGTTAAACATGCCAAAGTTAAAGTTAAGAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGATTATTTTAAAGTTAAACATGCCAAAGTTAAAGTTAAGAAAGT  400

seq1  TAAACAAAAAAGGTGAAGGAAAGAGTACAGATAATTAATATGGTTGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAAAAGGTGAAGGAAAGAGTACAGATAATTAATATGGTTGAAAA  450

seq1  CTTCCATTCAGTAAAGACTTTTGTCTCTTCAAAAACTTAATATGAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTCAGTAAAGACTTTTGTCTCTTCAAAAACTTAATATGAAATAA  500

seq1  CTCTGTGTGACTTTAAGAAATACATGACACTTAAGATGTGTTTTTAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGACTTTAAGAAATACATGACACTTAAGATGTGTTTTTAATTA  550

seq1  AAGAATAAAAATATACAGAACAAGGGATGTCATAATAAGTTCAAGAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAAATATACAGAACAAGGGATGTCATAATAAGTTCAAGAGAAT  600

seq1  GGAAAAGCAGCAACTTATACTCTAAAAACAATGCAAAAAATTAAAGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCAGCAACTTATACTCTAAAAACAATGCAAAAAATTAAAGACAA  650

seq1  GCCTATTTTTAAATAAATGTTAAAGAAATTAAAATAAATTTAAACAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTTTTAAATAAATGTTAAAGAAATTAAAATAAATTTAAACAAGAG  700

seq1  TAAGTAAGTTTCACTGATTGAGTAGAAGACTAAGGTATACAATGACTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGTTTCACTGATTGAGTAGAAGACTAAGGTATACAATGACTCAG  750

seq1  TAAAGAGGTAAGTATTATCTCTGAAACATATCCCTGACTTTTTTCTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGTAAGTATTATCTCTGAAACATATCCCTGACTTTTTTCTTTAA  800

seq1  AATAATTTTAATCACTTTGCTCAAGATCTTTAAAACTTCAAAACTGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTAATCACTTTGCTCAAGATCTTTAAAACTTCAAAACTGCTCA  850

seq1  AGAATTATAATGAGTTAATCCATCTTTATTAGAGGATGCCACACAGTCAA  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAATTATAATGAGTAAATCCATCTTTATTAGAGGATGCCACACAGTCAA  900

seq1  CAGATTATGTGACGTTTGAATATCATTGA-TTAGATAAAGGTACATC-TG  948
      ||||||||||||||||||||||||||||| |||||||| |||||||| ||
seq2  CAGATTATGTGACGTTTGAATATCATTGATTTAGATAAGGGTACATCTTG  950

seq1  TATAATT-GGAATTAGTTGATACCCAGTATC-TTGCTTCTGAAAAGATAT  996
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TATAATTGGGAATTAGTTGATACCCAGTATCTTTGCTTCTGAAAAGATAT  1000

seq1  GCAATATAGGAAATACTATA-TTCAACTACATGTGGAATTAAAAAATAGA  1045
      |||||||||||||||||||| ||||||||||||  |||||||||||||||
seq2  GCAATATAGGAAATACTATATTTCAACTACATGGTGAATTAAAAAATAGA  1050

seq1  GTG-AGGTAACAAATCCAAAAGGACATGCATGG-TATG-TACTCACTGAT  1092
      ||| ||||||||||||||||| |||||||||||  ||| |||||||||||
seq2  GTGAAGGTAACAAATCCAAAA-GACATGCATGGCAATGTTACTCACTGAT  1099

seq1  AAATGAACATTAGAGAAGATGTACAGAAAACCCATG  1128
       |||| ||||||||  |||||||||| | |||||||
seq2  TAATG-ACATTAGAAGAGATGTACAGGACACCCATG  1134