BAC Information

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BAC

Clone NameB6Ng01-190O15
ChromosomeX (Build37)
Map Location 142,962,739 - 143,103,150
singlet/doubletdoublet
Overlap geneEG666730
Upstream geneEG434860, LOC100039313, LOC623697, LOC623731, LOC237096, LOC100039558
Downstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190O15.bB6Ng01-190O15.g
ACCGA014549GA014550
length1,171702
definitionB6Ng01-190O15.b B6Ng01-190O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,101,987 - 143,103,150)(142,962,739 - 142,963,436)
sequence
gaattcctatgaatgagaaatggaaaggagctttcacatttgcatagagg
aaaggcaatgggaacaaagattttatatatatacatgaatgttgcagtta
cacacagggagaaaccagagtgctaacaatccctgtgtgctacaggcgat
atagaaagcattcttgctagacctatatatattggaatgttgcaattaca
cacaggaaggaatcagagtgctaactatccctgtgtgctagaggggatat
agaaagcattcttgctagatccatacctgggaatgtgaccccaccaaaaa
atcttttctgattacttacctaaaaaaactgtggactaatatatttccat
tgctttgaggcaataaattggtgaaaacctgttacaactgccttagaaac
ttattgaagtaacatttgagtcatctaatctagtaactgacatggaaagt
accaacaagcatgtgtttatttttttttaagcaaaaggttcattttttat
ttcctcagcatgatccatcaaaaataataacattggttattatttttaaa
ataattaaaatgccaaaaataattttttcatgttagtagaatatgaggca
catatctacccatacatcattccccacaggcataacagttagtagagaat
aatatcagtgtacattttcacagaaatatgactgttacattttcacagaa
atgctattgtgcatctttacaatgaggagatttacctatattcactctaa
cagtgctttaaaaggatggcacatgtttgtctaaaagtctactaacagaa
agaggtacaaatcaattaaatgtaccattgcagtttcccaaccatttcct
ttgccttcctcttcctgacctatagcacattgtctatacagtagtttaag
aaacacttgtaaactatagcaatagctctacttaaaactgtttcatgaat
tcactaagccatttagatgagagaaaggagatgaaaaacaagcacaggag
aagaagtaggaagaaatctcattaccattattttaaaaactggatgatct
cattttttcctcccactaaaatgtcttcttatgacattcccatgaagtat
tggggggtgccctccttataattgccttccaagaaacctcttttctaatt
gcagaggccaattgtatttgc

gaattcagtgagaatctcttgaatgattaaaaagaatatgggtacacatt
agataactatcactaattcaaatatgcaaatgcaacattacttctgactg
aaaatgataaagacaagatggctcatgtcagggagaataaaaatatgaaa
tatacagatacttagtatatgatcacaaacctaaagtaaaatatcctaag
tcaaatgcagataattgcacccaaccaatggacagaagctgctgaccctt
gtggttaaattaggagaaagctggaagaagctgagaaagagcatgacctt
gtacaaggatcagcagtctcaattaaactggacccctgagatctctcaaa
cactgaaccaccaaccaggcagcatacaccagctgataggaggcccccaa
cacatataaagcagaggacagccaggtctgggttcagtcagagatgatgt
acctaaccctcaagagactggagatcccagggagtttagaggtctggtgg
ggtggggagtggggtcatccatgaggagacaggggggaggatgtatggaa
tgtggaacagtcagtttcctaaaatctggagtataaatttattaattaaa
caaacaaataaatacatgatcttttaaaaaagaaaaaaaaaggcataaaa
tcttgtaccatgaatgaatacattttctccattttctttttcaatacttt
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_143101987_143103150
seq2: B6Ng01-190O15.b_46_1216 (reverse)

seq1  GCAAATACAAT--GGCTCTGC-ATTAGAAAAGAGG-TTCTTTGAA-GCAA  45
      |||||||||||  | |||||| ||||||||||||| ||||| ||| ||||
seq2  GCAAATACAATTGGCCTCTGCAATTAGAAAAGAGGTTTCTTGGAAGGCAA  50

seq1  -TATTAGAAGGGCA--CCCCAATACTTCATGGAAATGTCATAAGAAGACA  92
       ||| || ||||||  |||||||||||||||| |||||||||||||||||
seq2  TTATAAGGAGGGCACCCCCCAATACTTCATGGGAATGTCATAAGAAGACA  100

seq1  TTTTAGTGGGAGGAAAAAATGAGATCATCCAGTTTTTAAAATAATGGTAA  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGGGAGGAAAAAATGAGATCATCCAGTTTTTAAAATAATGGTAA  150

seq1  TGAGATTTCTTCCTACTTCTTCTCCTGTGCTTGTTTTTCATCTCCTTTCT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTCTTCCTACTTCTTCTCCTGTGCTTGTTTTTCATCTCCTTTCT  200

seq1  CTTCATCTAAATGGCTTAGTGAATTCATGAAACAGTTTTAAGTAGAGCTA  242
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TCATCTAAATGGCTTAGTGAATTCATGAAACAGTTTTAAGTAGAGCTA  249

seq1  TTGCTATAGTTTACAAGTGTTTCTTAAACTACTGTATAGACAATGTGCTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATAGTTTACAAGTGTTTCTTAAACTACTGTATAGACAATGTGCTA  299

seq1  TAGGTCAGGAAGAGGAAGGCAAAGGAAATGGTTGGGAAACTGCAATGGTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGGAAGAGGAAGGCAAAGGAAATGGTTGGGAAACTGCAATGGTA  349

seq1  CATTTAATTGATTTGTACCTCTTTCTGTTAGTAGACTTTTAGACAAACAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATTGATTTGTACCTCTTTCTGTTAGTAGACTTTTAGACAAACAT  399

seq1  GTGCCATCCTTTTAAAGCACTGTTAGAGTGAATATAGGTAAATCTCCTCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATCCTTTTAAAGCACTGTTAGAGTGAATATAGGTAAATCTCCTCA  449

seq1  TTGTAAAGATGCACAATAGCATTTCTGTGAAAATGTAACAGTCATATTTC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGATGCACAATAGCATTTCTGTGAAAATGTAACAGTCATATTTC  499

seq1  TGTGAAAATGTACACTGATATTATTCTCTACTAACTGTTATGCCTGTGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAATGTACACTGATATTATTCTCTACTAACTGTTATGCCTGTGGG  549

seq1  GAATGATGTATGGGTAGATATGTGCCTCATATTCTACTAACATGAAAAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGTATGGGTAGATATGTGCCTCATATTCTACTAACATGAAAAAA  599

seq1  TTATTTTTGGCATTTTAATTATTTTAAAAATAATAACCAATGTTATTATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGGCATTTTAATTATTTTAAAAATAATAACCAATGTTATTATT  649

seq1  TTTGATGGATCATGCTGAGGAAATAAAAAATGAACCTTTTGCTTAAAAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGATCATGCTGAGGAAATAAAAAATGAACCTTTTGCTTAAAAAA  699

seq1  AAATAAACACATGCTTGTTGGTACTTTCCATGTCAGTTACTAGATTAGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACACATGCTTGTTGGTACTTTCCATGTCAGTTACTAGATTAGAT  749

seq1  GACTCAAATGTTACTTCAATAAGTTTCTAAGGCAGTTGTAACAGGTTTTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAATGTTACTTCAATAAGTTTCTAAGGCAGTTGTAACAGGTTTTC  799

seq1  ACCAATTTATTGCCTCAAAGCAATGGAAATATATTAGTCCACAGTTTTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTATTGCCTCAAAGCAATGGAAATATATTAGTCCACAGTTTTTT  849

seq1  TAGGTAAGTAATCAGAAAAGATTTTTTGGTGGGGTCACATTCCCAGGTAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGTAATCAGAAAAGATTTTTTGGTGGGGTCACATTCCCAGGTAT  899

seq1  GGATCTAGCAAGAATGCTTTCTATATCCCCTCTAGCACACAGGGATAGTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGCAAGAATGCTTTCTATATCCCCTCTAGCACACAGGGATAGTT  949

seq1  AGCACTCTGATTCCTTCCTGTGTGTAATTGCAACATTCCAATATATATAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTGATTCCTTCCTGTGTGTAATTGCAACATTCCAATATATATAG  999

seq1  GTCTAGCAAGAATGCTTTCTATATCGCCTGTAGCACACAGGGATTGTTAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCAAGAATGCTTTCTATATCGCCTGTAGCACACAGGGATTGTTAG  1049

seq1  CACTCTGGTTTCTCCCTGTGTGTAACTGCAACATTCATGTATATATATAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGTTTCTCCCTGTGTGTAACTGCAACATTCATGTATATATATAA  1099

seq1  AATCTTTGTTCCCATTGCCTTTCCTCTATGCAAATGTGAAAGCTCCTTTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGTTCCCATTGCCTTTCCTCTATGCAAATGTGAAAGCTCCTTTC  1149

seq1  CATTTCTCATTCATAGGAATTC  1164
      ||||||||||||||||||||||
seq2  CATTTCTCATTCATAGGAATTC  1171


seq1: chrX_142962739_142963436
seq2: B6Ng01-190O15.g_66_767

seq1  GAATTCAGTGAGAATCTCTTGAATGATTAAAAAGAATATGGGTACACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGAATCTCTTGAATGATTAAAAAGAATATGGGTACACATT  50

seq1  AGATAACTATCACTAATTCAAATATGCAAATGCAACATTACTTCTGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTATCACTAATTCAAATATGCAAATGCAACATTACTTCTGACTG  100

seq1  AAAATGATAAAGACAAGATGGCTCATGTCAGGGAGAATAAAAATATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATAAAGACAAGATGGCTCATGTCAGGGAGAATAAAAATATGAAA  150

seq1  TATACAGATACTTAGTATATGATCACAAACCTAAAGTAAAATATCCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGATACTTAGTATATGATCACAAACCTAAAGTAAAATATCCTAAG  200

seq1  TCAAATGCAGATAATTGCACCCAACCAATGGACAGAAGCTGCTGACCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGCAGATAATTGCACCCAACCAATGGACAGAAGCTGCTGACCCTT  250

seq1  GTGGTTAAATTAGGAGAAAGCTGGAAGAAGCTGAGAAAGAGCATGACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAATTAGGAGAAAGCTGGAAGAAGCTGAGAAAGAGCATGACCTT  300

seq1  GTACAAGGATCAGCAGTCTCAATTAAACTGGACCCCTGAGATCTCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGATCAGCAGTCTCAATTAAACTGGACCCCTGAGATCTCTCAAA  350

seq1  CACTGAACCACCAACCAGGCAGCATACACCAGCTGATAGGAGGCCCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACCACCAACCAGGCAGCATACACCAGCTGATAGGAGGCCCCCAA  400

seq1  CACATATAAAGCAGAGGACAGCCAGGTCTGGGTTCAGTCAGAGATGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATAAAGCAGAGGACAGCCAGGTCTGGGTTCAGTCAGAGATGATGT  450

seq1  ACCTAACCCTCAAGAGACTGGAGATCCCAGGGAGTTTAGAGGTCTGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACCCTCAAGAGACTGGAGATCCCAGGGAGTTTAGAGGTCTGGTGG  500

seq1  GGTGGGGAGTGGGGTCATCCATGAGGAGACAGGGGGGAGGATGTATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGAGTGGGGTCATCCATGAGGAGACAGGGGGGAGGATGTATGGAA  550

seq1  TGTGGAACAGTCAGTTTCCTAAAATCTGGAGTATAAATTAATTAATTAAA  600
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTGGAACAGTCAGTTTCCTAAAATCTGGAGTATAAATTTATTAATTAAA  600

seq1  CAAACAAATAAATACATGATC-TTTAAAAAAGAAAAAAAAAGGCAT-AAA  648
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  CAAACAAATAAATACATGATCTTTTAAAAAAGAAAAAAAAAGGCATAAAA  650

seq1  TCTTGTACCAAGAAAGAA-ACA-TTTCTCCATTTAATTTATCAATACATT  696
      |||||||||| ||| ||| ||| |||||||||||  ||| ||||||| ||
seq2  TCTTGTACCATGAATGAATACATTTTCTCCATTTTCTTTTTCAATACTTT  700

seq1  AC  698
      ||
seq2  AC  702


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