BAC Information

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BAC

Clone NameB6Ng01-192C01
ChromosomeX (Build37)
Map Location 155,790,341 - 155,980,701
singlet/doubletdoublet
Overlap geneRps6ka3, Eif1ay, Mtap7d2, A830080D01Rik
Upstream geneLOC436243, LOC100040371
Downstream geneLOC100041359, Sh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192C01.bB6Ng01-192C01.g
ACCGA015442GA015443
length1,1331,150
definitionB6Ng01-192C01.b B6Ng01-192C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,790,341 - 155,791,491)(155,979,559 - 155,980,701)
sequence
gaattctgtttcagacacagcaaaggtacgtgtgacttctcactttgctt
tattattaagggaaagaattggacccaggacatcatatatgctaagcata
cattctcaacctttcttgtttctttttttctttttttttttttgtggtga
tctaacaatctcccttttcttttaattctctcatacattacatcctagcc
agagttttccctccctccactccccctatcctgtcctccatctcccctcc
ttcatttctcttcagaaaaggacaggcctcccagggatataaaccaagca
tggcataacaagttagaataaaactagacccaaaccattatatcaaggtt
agatgaggcaagctggtaggaggaaaagagtcccaggagcaggtgaaagg
agtcccacaagaacacaaagatacacaaacataacatgcatccagaggaa
gacccatgcagtctctgtgcttgccagagagagcccctgtgagccttgct
taatcgattctctgaaccatgttctcctggtattcttgtttgtttgtttg
tttaaatccagccattgacagtctctgtgcttgccagagagagcccctgt
gagccttgcttaatcgattctgtgaaccatgttctcctggtattcttgtt
tgtttgtttgtctgtttgtttgtttgtttgtttgtttaaatccagccatt
gacagtctctgtggttgccagagagagcccctgtgagccttgcttaatcg
attctgtgaaccatgttctcctggtattcttgtttgtttgtttgtctgtt
tgtttgtttgtttaaatccagccattgacagtctctgtggttgccagaga
gagccactatgagccctgcttagttgattctgtgggccatgttctcctag
attctgtttgtttgtttgttgtttgtttgtttgtgttaaatctagccatt
acccccctctcataactcatcccacaattcttcactcattttctctgcca
tcccaaaataatgctccacaacaccaagtctccccctccctggggctcaa
gtctctgaagacctgcgcacctgagccagaccaggcagtcgctggctatt
aatgtgttgggaacctttgacagcttgtaatgc
gaattcactctgtagaccaggctggttttaaactcagaaatcctcctgcc
tctacctcctggaaataaaggcatgggccaccactgccctggccagcctg
ttataaatagtgcatttaaggctagccaaaggctacaaaatgaaactctc
acaaaatattcaaaattaaattaaaaataaaaatgaagatagaactagtt
attcttccctatcggcagccaagcacttttcttggacatagtttttgttt
tgttttgttttttgagacagggtttctctgtgtagccctggctgtcctgg
atggagctcactttgtagaccaggctggcctcagaactcagaaatcctcc
tgcctctgcctcccaagtgctgggactaaaggcgagcaccaccaacgccc
ggcttggacatagtattaaactagcttaaatacaagccaaattgaagtct
tggaaccctgcaagtgaagttcgcagggtgggagatgagtatgtgtgcct
cttctgcagggagaaaccttacatttcccaaaccaccatcggcgcaggag
aggggaagaagccgcacaccaggctgcgcagctcctgttacgtaatcatt
tggactcgactataaaagccgcgcagagctcggcaagggcgcgaacgtat
ctacaaaatgtccgctgccgcctttactccaccaccactcaggcgctgag
accatgaaccagtggccaccaaggggaatgcggaagacccgcaactggga
ggggaaaatgacagaaaggaattgtggaagaggggagaaagcaggtagaa
agaaatcaaaatcaagtctttacccttctctggagacgtgagttttcagc
ccctaaccgtcgctcacaccaatgggaaaaaaacaataaacaattaacaa
caaacgttaggattggggggggcgggacgggaagaacgaagaaagggctc
ctgaacagcagaaattaccgcggtttatgtgtcctgctctgccagagccc
agtctcctcaaccttcagctggttgtgcgctttcccgcttcttttgctac
cttgtttctttttgggacctggggatggcacgagactgcgtagggcttgg
ctggcgggtccccagaactccaacttgtccagtctgtcctttagccagca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_155790341_155791491
seq2: B6Ng01-192C01.b_45_1177

seq1  GAATTCTGTTTCAGACACAGCAAAGGTACGTGTGACTTCTCACTTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTCAGACACAGCAAAGGTACGTGTGACTTCTCACTTTGCTT  50

seq1  TATTATTAAGGGAAAGAATTGGACCCAGGACATCATATATGCTAAGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAAGGGAAAGAATTGGACCCAGGACATCATATATGCTAAGCATA  100

seq1  CATTCTCAACCTTTCTTGTTTCTTTTTTTCTTTTTTTTTTTTTGTGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAACCTTTCTTGTTTCTTTTTTTCTTTTTTTTTTTTTGTGGTGA  150

seq1  TCTAACAATCTCCCTTTTCTTTTAATTCTCTCATACATTACATCCTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAATCTCCCTTTTCTTTTAATTCTCTCATACATTACATCCTAGCC  200

seq1  AGAGTTTTCCCTCCCTCCACTCCCCCTATCCTGTCCTCCATCTCCCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTCCCTCCCTCCACTCCCCCTATCCTGTCCTCCATCTCCCCTCC  250

seq1  TTCATTTCTCTTCAGAAAAGGACAGGCCTCCCAGGGATATAAACCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTCTTCAGAAAAGGACAGGCCTCCCAGGGATATAAACCAAGCA  300

seq1  TGGCATAACAAGTTAGAATAAAACTAGACCCAAACCATTATATCAAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAACAAGTTAGAATAAAACTAGACCCAAACCATTATATCAAGGTT  350

seq1  AGATGAGGCAAGCTGGTAGGAGGAAAAGAGTCCCAGGAGCAGGTGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGCAAGCTGGTAGGAGGAAAAGAGTCCCAGGAGCAGGTGAAAGG  400

seq1  AGTCCCACAAGAACACAAAGATACACAAACATAACATGCATCCAGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACAAGAACACAAAGATACACAAACATAACATGCATCCAGAGGAA  450

seq1  GACCCATGCAGTCTCTGTGCTTGCCAGAGAGAGCCCCTGTGAGCCTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATGCAGTCTCTGTGCTTGCCAGAGAGAGCCCCTGTGAGCCTTGCT  500

seq1  TAATCGATTCTCTGAACCATGTTCTCCTGGTATTCTTGTTTGTTTGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGATTCTCTGAACCATGTTCTCCTGGTATTCTTGTTTGTTTGTTTG  550

seq1  TTTAAATCCAGCCATTGACAGTCTCTGTGCTTGCCAGAGAGAGCCCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCCAGCCATTGACAGTCTCTGTGCTTGCCAGAGAGAGCCCCTGT  600

seq1  GAGCCTTGCTTAATCGATTCTGTGAACCATGTTCTCCTGGTATTCTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGCTTAATCGATTCTGTGAACCATGTTCTCCTGGTATTCTTGTT  650

seq1  TGTTTGTTTGTCTGTTTGTTTGTTTGTTTGTTTGTTTAAATCCAGCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTCTGTTTGTTTGTTTGTTTGTTTGTTTAAATCCAGCCATT  700

seq1  GACAGTCTCTGTGGTTGCCAGAGAGAGCCCCTGTGAGCCTTGCTTAATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTCTGTGGTTGCCAGAGAGAGCCCCTGTGAGCCTTGCTTAATCG  750

seq1  ATTCTGTGAACCATGTTCTCCTGGTATTCTTGTTTGTTTGTTTGTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGAACCATGTTCTCCTGGTATTCTTGTTTGTTTGTTTGTCTGTT  800

seq1  TGTTTGTTTGTTTAAATCCAGCCATTGACAGTCTCTGTGGTTGCCAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTAAATCCAGCCATTGACAGTCTCTGTGGTTGCCAGAGA  850

seq1  GAGCCACTATGAGCCCTGCTTAGTTGATTCTGTGGGCCATGTTCTCCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTATGAGCCCTGCTTAGTTGATTCTGTGGGCCATGTTCTCCTAG  900

seq1  TATTCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTAAATCTA  950
       |||| |||||||||||||| ||||||||||||||||    |||||||||
seq2  -ATTC-TGTTTGTTTGTTTG-TTGTTTGTTTGTTTGT---GTTAAATCTA  944

seq1  GCCATTACCCCCCTCCTCATACTCCATCCCACAATTCTTCACCTCATTTT  1000
      |||||||||||||| ||||||   ||||||||||||||||| ||||||||
seq2  GCCATTACCCCCCT-CTCATAACTCATCCCACAATTCTTCA-CTCATTTT  992

seq1  TCCTCTGCCATCCCCAAAATAATGCTCCACCACCACCAGGCCTCCCCCCT  1050
        ||||||||| ||||||||||||||||| || ||||| | || ||||||
seq2  --CTCTGCCAT-CCCAAAATAATGCTCCA-CAACACCAAGTCT-CCCCCT  1037

seq1  CCCTGGGGCCTCAAGTCTCTTGAGAACTTGGCGCA-CTGAGGCCAGACCA  1099
      |||||||| |||||||||||  ||| ||  ||||| |||| |||||||||
seq2  CCCTGGGG-CTCAAGTCTCTGAAGACCT--GCGCACCTGA-GCCAGACCA  1083

seq1  GGCAGTCCTCTGCTATATATGTGTTGGGGACCCTTGACCAGCTTGTATAT  1149
      |||||||    |||||  |||||||||| ||| |||| ||||||||| ||
seq2  GGCAGTCGCTGGCTATTAATGTGTTGGGAACCTTTGA-CAGCTTGTA-AT  1131

seq1  GC  1151
      ||
seq2  GC  1133

seq1: chrX_155979559_155980701
seq2: B6Ng01-192C01.g_68_1217 (reverse)

seq1  TGCTGGGCTAAGG-CAGACT-GAC-AGGTGGAG-TCTGGGG-CCCGCCAG  45
      ||||||   |||| |||||| ||| || ||||| ||||||| ||||||||
seq2  TGCTGGCTAAAGGACAGACTGGACAAGTTGGAGTTCTGGGGACCCGCCAG  50

seq1  CCA--GCCTCGCCAGTCTCGTGCAATCCCCAGGTCCCAAAAAGAAACAAG  93
      |||   |||   ||||||||||| ||||||||||||||||||||||||||
seq2  CCAAGCCCTACGCAGTCTCGTGCCATCCCCAGGTCCCAAAAAGAAACAAG  100

seq1  GTAGCAAAAAGAAGCGGGAAAGCGCACAAACAGCTGAAGGTTGGAGGAGA  143
      ||||| ||||||||||||||||||||||| |||||||||||| |||||||
seq2  GTAGC-AAAAGAAGCGGGAAAGCGCACAACCAGCTGAAGGTT-GAGGAGA  148

seq1  CTGGGCTCTGGCAGAGCAGGACACATAAACCGCGGTAATTTCTGCTGTTC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTGGCAGAGCAGGACACATAAACCGCGGTAATTTCTGCTGTTC  198

seq1  AGGAGCCCCTTCTTCGTTCTTCCCCGTCCGCCCCCCC--ATTCTTACGTT  241
      |||||||| |||||||||||||||   ||||||||||  || || |||||
seq2  AGGAGCCCTTTCTTCGTTCTTCCCGTCCCGCCCCCCCCAATCCTAACGTT  248

seq1  TGTTTGTTTATTTGTTTATTTGTTTTTTTCCATTGTTGTGAGCGACGGTT  291
      ||||   ||| |||||||||  |||||| |||||| ||||||||||||||
seq2  TGTT--GTTAATTGTTTATTGTTTTTTTCCCATTGGTGTGAGCGACGGTT  296

seq1  AGGGGCTG-AAACTCACGTCTCCAGAGAAGGGT-AAGACTTGATTTTGAT  339
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AGGGGCTGAAAACTCACGTCTCCAGAGAAGGGTAAAGACTTGATTTTGAT  346

seq1  TTCTTTCTACCTGCTTTCTCCCCTCTTCCACAATTCCTTTCTGTCATTTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTACCTGCTTTCTCCCCTCTTCCACAATTCCTTTCTGTCATTTT  396

seq1  CCCCTCCCAGTTGCGGGTCTTCCGCATTCCCCTTGGTGGCCACTGGTTCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCAGTTGCGGGTCTTCCGCATTCCCCTTGGTGGCCACTGGTTCA  446

seq1  TGGTCTCAGCGCCTGAGTGGTGGTGGAGTAAAGGCGGCAGCGGACATTTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAGCGCCTGAGTGGTGGTGGAGTAAAGGCGGCAGCGGACATTTT  496

seq1  GTAGATACGTTCGCGCCCTTGCCGAGCTCTGCGCGGCTTTTATAGTCGAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATACGTTCGCGCCCTTGCCGAGCTCTGCGCGGCTTTTATAGTCGAG  546

seq1  TCCAAATGATTACGTAACAGGAGCTGCGCAGCCTGGTGTGCGGCTTCTTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGATTACGTAACAGGAGCTGCGCAGCCTGGTGTGCGGCTTCTTC  596

seq1  CCCTCTCCTGCGCCGATGGTGGTTTGGGAAATGTAAGGTTTCTCCCTGCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCTGCGCCGATGGTGGTTTGGGAAATGTAAGGTTTCTCCCTGCA  646

seq1  GAAGAGGCACACATACTCATCTCCCACCCTGCGAACTTCACTTGCAGGGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCACACATACTCATCTCCCACCCTGCGAACTTCACTTGCAGGGT  696

seq1  TCCAAGACTTCAATTTGGCTTGTATTTAAGCTAGTTTAATACTATGTCCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACTTCAATTTGGCTTGTATTTAAGCTAGTTTAATACTATGTCCA  746

seq1  AGCCGGGCGTTGGTGGTGCTCGCCTTTAGTCCCAGCACTTGGGAGGCAGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGCGTTGGTGGTGCTCGCCTTTAGTCCCAGCACTTGGGAGGCAGA  796

seq1  GGCAGGAGGATTTCTGAGTTCTGAGGCCAGCCTGGTCTACAAAGTGAGCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGGATTTCTGAGTTCTGAGGCCAGCCTGGTCTACAAAGTGAGCT  846

seq1  CCATCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACAA  896

seq1  AACAAAACAAAAACTATGTCCAAGAAAAGTGCTTGGCTGCCGATAGGGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAACTATGTCCAAGAAAAGTGCTTGGCTGCCGATAGGGAA  946

seq1  GAATAACTAGTTCTATCTTCATTTTTATTTTTAATTTAATTTTGAATATT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTAGTTCTATCTTCATTTTTATTTTTAATTTAATTTTGAATATT  996

seq1  TTGTGAGAGTTTCATTTTGTAGCCTTTGGCTAGCCTTAAATGCACTATTT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAGTTTCATTTTGTAGCCTTTGGCTAGCCTTAAATGCACTATTT  1046

seq1  ATAACAGGCTGGCCAGGGCAGTGGTGGCCCATGCCTTTATTTCCAGGAGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGGCTGGCCAGGGCAGTGGTGGCCCATGCCTTTATTTCCAGGAGG  1096

seq1  TAGAGGCAGGAGGATTTCTGAGTTTAAAACCAGCCTGGTCTACAGAGTGA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCAGGAGGATTTCTGAGTTTAAAACCAGCCTGGTCTACAGAGTGA  1146

seq1  ATTC  1143
      ||||
seq2  ATTC  1150