BAC Information

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BAC

Clone NameB6Ng01-193H07
ChromosomeX (Build37)
Map Location 119,699,432 - 119,855,689
singlet/doubletdoublet
Overlap genenone
Upstream geneEG245575, LOC100039544, Nap1l3
Downstream gene3110007F17Rik, LOC100039751, LOC100039763, LOC665281, EG625591, LOC665325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193H07.bB6Ng01-193H07.g
ACCGA016421GA016422
length1,1001,137
definitionB6Ng01-193H07.b B6Ng01-193H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,854,581 - 119,855,689)(119,699,432 - 119,700,565)
sequence
gaattcatgccagcattggctacatagtaaacttgagatcaccctacaca
atgagagcctagatcaaaaaaaaaaaatctatatataaaacagaacaaac
aagtaagaagtaagaagtggattgtttctaaatggtagtagatgcatgat
taattcctttcatgctatgcctacatttatgatttctttaatttctcact
acaacagctttgggtaatattcctttgaaactctggaatatttcttgttt
gtctattgctctcactgtaacctgtttataaaaatagctgtccatggttg
tctccccatgtcttagacgtttataatggcaaataatgtgatacccagac
tatgtgtcactttcattgtagaaaatacttcaaaattgaaaacttcacct
agtaatatgcatagacatagaaatatgtctaaatgatattttatagatgc
tatataacagtgtaactttattataagatatgcctaagtaaaaatgacag
attctgatatgtttgtatttctggtacgtgtattttgtcttgagtttggc
agtttaataattattattagaaagtgtcaataacatcttcgaataatagc
tatttgcttacctattactactgaacgcatcccaaaacaaagaggatagg
caagtaatatttccatgaagctgcaagtcatcttagttatcccagcttca
ggctgcagtagatatatcaactcttatctcaactggatttatacacatga
tcagactcagagaggactgagcatatttatgttaaattagctgaatacag
tcaggtagcacttcaaactgcaatttatctaatactttgtggcattatta
tgtaaatgtcagtacatttctttggaccagtatattagctgagaaatatt
ctcttcctactgtagaaaggggggggggatatgaactgaattatgcataa
tattctagctctggctgtatcattcattcccatgtcctacaggaaagtca
agttactatgagcaaaggccaaaatcagattcgagatacaatataggtgg
atactatagttttagtcaagcatgtgaattggccctagatacttatctat


gaattctttgtttagttccatacccaatttttttgattgggttgtttgga
ttttttcactgttagcttcttgagttctttaaatattttggatatttcaa
tatttatagtacagattatcagcaactatagagaaaggtcacatgaattt
tccttcaaacgagtactacagaatactgttcatatcctcctttgcacctg
tcatatgtacatattatatacatattttaaagtactttttgttagatata
atggcacatacacacaatcaaaacatttggaaatgaattcagtaagatta
tgagttcatgcccagtctcagtatttactgactttgaggaaaacctcagc
tacttggaataatatgtcagaacaaagcaacagcagaaccacatattttt
acttatgtgtaatgaatgaatgatcacatttggataattaactcagtatt
tcaaattttcattatgtttgtggcaaaatattttttaaaaccccatcttg
tagttcttttgaaacaagcatattattgttaaatatagtcactctattta
ttatgatactgtcctaatgcaaagaaagaatgtttacttggtgggtaaaa
gatactacttggttttcatgtgtgcatgtgtttggggtgtttatatttac
tactgaaattgaacataactttataccttttttttcttactaagcttgaa
gaaaaagtaaatatcagttgaggcaaactataaatctcagaggtaataag
aaaggaagagagaagaaaaatatactatgttattaatgctggcatggtgg
ttcagacacatggtagacaaataaccatatgatgtggagggaggtttact
agaaatatataagaaagtaaaaagtacccccaaaaactctaaaacaaaat
aaatgaacaaacaaacatatgaaaacctagtatgtacttgccaacatctg
aaagaaaggagacaattaaggaaaagaaggagacaattaggaaaaaggaa
aattatacttttctgactcggacccccagaaagggagcagaacaatctgg
agtaccatatgacctcataggactacactatgggcgttaattaggggaaa
gaaaaggtgcagtatctcaggttaagaatctggtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_119854581_119855689
seq2: B6Ng01-193H07.b_47_1146 (reverse)

seq1  ATAGATAAGTA-CTAGGGCCAATTCACATGCTTTGCTTATAAACTATGGT  49
      ||||||||||| |||||||||||||||||||||  ||   ||||||| | 
seq2  ATAGATAAGTATCTAGGGCCAATTCACATGCTTGACT--AAAACTATAG-  47

seq1  TATCAACTTATATTGTTTCTCCGAATCTTGATTTTTTGCCTTTGCTC-TT  98
      |||| || |||||||| ||| |||||| ||| |||| |||||||||| | 
seq2  TATCCACCTATATTGTATCT-CGAATC-TGA-TTTTGGCCTTTGCTCATA  94

seq1  GTAACTTGCTTTTCCTTGTAGGACATTGGAATGAATGATACAAGCCAGAG  148
      ||||||||  ||||| |||||||||| |||||||||||||| ||||||||
seq2  GTAACTTGACTTTCC-TGTAGGACATGGGAATGAATGATAC-AGCCAGAG  142

seq1  CTTAGAATATTATTGCATAATTCAGTTCATATCCCCCCCCCCTTTTCTAC  198
      | |||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  C-TAGAATATTA-TGCATAATTCAGTTCATATCCCCCCCCCC-TTTCTAC  189

seq1  AGTAGGAAGAGAATATTTCTCAGCTAATATACTGGTCCAAAGAAATGTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAAGAGAATATTTCTCAGCTAATATACTGGTCCAAAGAAATGTAC  239

seq1  TGACATTTACATAATAATGCCACAAAGTATTAGATAAATTGCAGTTTGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTACATAATAATGCCACAAAGTATTAGATAAATTGCAGTTTGAA  289

seq1  GTGCTACCTGACTGTATTCAGCTAATTTAACATAAATATGCTCAGTCCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACCTGACTGTATTCAGCTAATTTAACATAAATATGCTCAGTCCTC  339

seq1  TCTGAGTCTGATCATGTGTATAAATCCAGTTGAGATAAGAGTTGATATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTCTGATCATGTGTATAAATCCAGTTGAGATAAGAGTTGATATAT  389

seq1  CTACTGCAGCCTGAAGCTGGGATAACTAAGATGACTTGCAGCTTCATGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCAGCCTGAAGCTGGGATAACTAAGATGACTTGCAGCTTCATGGA  439

seq1  AATATTACTTGCCTATCCTCTTTGTTTTGGGATGCGTTCAGTAGTAATAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACTTGCCTATCCTCTTTGTTTTGGGATGCGTTCAGTAGTAATAG  489

seq1  GTAAGCAAATAGCTATTATTCGAAGATGTTATTGACACTTTCTAATAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAAATAGCTATTATTCGAAGATGTTATTGACACTTTCTAATAATA  539

seq1  ATTATTAAACTGCCAAACTCAAGACAAAATACACGTACCAGAAATACAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAACTGCCAAACTCAAGACAAAATACACGTACCAGAAATACAAA  589

seq1  CATATCAGAATCTGTCATTTTTACTTAGGCATATCTTATAATAAAGTTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGAATCTGTCATTTTTACTTAGGCATATCTTATAATAAAGTTAC  639

seq1  ACTGTTATATAGCATCTATAAAATATCATTTAGACATATTTCTATGTCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATATAGCATCTATAAAATATCATTTAGACATATTTCTATGTCTA  689

seq1  TGCATATTACTAGGTGAAGTTTTCAATTTTGAAGTATTTTCTACAATGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTACTAGGTGAAGTTTTCAATTTTGAAGTATTTTCTACAATGAA  739

seq1  AGTGACACATAGTCTGGGTATCACATTATTTGCCATTATAAACGTCTAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACACATAGTCTGGGTATCACATTATTTGCCATTATAAACGTCTAAG  789

seq1  ACATGGGGAGACAACCATGGACAGCTATTTTTATAAACAGGTTACAGTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGAGACAACCATGGACAGCTATTTTTATAAACAGGTTACAGTGA  839

seq1  GAGCAATAGACAAACAAGAAATATTCCAGAGTTTCAAAGGAATATTACCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATAGACAAACAAGAAATATTCCAGAGTTTCAAAGGAATATTACCC  889

seq1  AAAGCTGTTGTAGTGAGAAATTAAAGAAATCATAAATGTAGGCATAGCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTTGTAGTGAGAAATTAAAGAAATCATAAATGTAGGCATAGCAT  939

seq1  GAAAGGAATTAATCATGCATCTACTACCATTTAGAAACAATCCACTTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAATTAATCATGCATCTACTACCATTTAGAAACAATCCACTTCTT  989

seq1  ACTTCTTACTTGTTTGTTCTGTTTTATATATAGATTTTTTTTTTTTGATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTACTTGTTTGTTCTGTTTTATATATAGATTTTTTTTTTTTGATC  1039

seq1  TAGGCTCTCATTGTGTAGGGTGATCTCAAGTTTACTATGTAGCCAATGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCTCATTGTGTAGGGTGATCTCAAGTTTACTATGTAGCCAATGCT  1089

seq1  GGCATGAATTC  1109
      |||||||||||
seq2  GGCATGAATTC  1100


seq1: chrX_119699432_119700565
seq2: B6Ng01-193H07.g_64_1200

seq1  GAATTCTTTGTTTAGTTCCATACCCAATTTTTTTGATTGGGTTGTTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGTTCCATACCCAATTTTTTTGATTGGGTTGTTTGGA  50

seq1  TTTTTTCACTGTTAGCTTCTTGAGTTCTTTAAATATTTTGGATATTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACTGTTAGCTTCTTGAGTTCTTTAAATATTTTGGATATTTCAA  100

seq1  TATTTATAGTACAGATTATCAGCAACTATAGAGAAAGGTCACATGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAGTACAGATTATCAGCAACTATAGAGAAAGGTCACATGAATTT  150

seq1  TCCTTCAAACGAGTACTACAGAATACTGTTCATATCCTCCTTTGCACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAACGAGTACTACAGAATACTGTTCATATCCTCCTTTGCACCTG  200

seq1  TCATATGTACATATTATATACATATTTTAAAGTACTTTTTGTTAGATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTACATATTATATACATATTTTAAAGTACTTTTTGTTAGATATA  250

seq1  ATGGCACATACACACAATCAAAACATTTGGAAATGAATTCAGTAAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACATACACACAATCAAAACATTTGGAAATGAATTCAGTAAGATTA  300

seq1  TGAGTTCATGCCCAGTCTCAGTATTTACTGACTTTGAGGAAAACCTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCATGCCCAGTCTCAGTATTTACTGACTTTGAGGAAAACCTCAGC  350

seq1  TACTTGGAATAATATGTCAGAACAAAGCAACAGCAGAACCACATATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGAATAATATGTCAGAACAAAGCAACAGCAGAACCACATATTTTT  400

seq1  ACTTATGTGTAATGAATGAATGATCACATTTGGATAATTAACTCAGTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTGTAATGAATGAATGATCACATTTGGATAATTAACTCAGTATT  450

seq1  TCAAATTTTCATTATGTTTGTGGCAAAATATTTTTTAAAACCCCATCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTTTCATTATGTTTGTGGCAAAATATTTTTTAAAACCCCATCTTG  500

seq1  TAGTTCTTTTGAAACAAGCATATTATTGTTAAATATAGTCACTCTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTTTGAAACAAGCATATTATTGTTAAATATAGTCACTCTATTTA  550

seq1  TTATGATACTGTCCTAATGCAAAGAAAGAATGTTTACTTGGTGGGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATACTGTCCTAATGCAAAGAAAGAATGTTTACTTGGTGGGTAAAA  600

seq1  GATACTACTTGGTTTTCATGTGTGCATGTGTTTGGGGTGTTTATATTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTACTTGGTTTTCATGTGTGCATGTGTTTGGGGTGTTTATATTTAC  650

seq1  TACTGAAATTGAACATAACTTTATACCTTTTTTTTCTTACTAAGCTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAATTGAACATAACTTTATACCTTTTTTTTCTTACTAAGCTTGAA  700

seq1  GAAAAAGTAAATATCAGTTGAGGCAAACTATAAATCTCAGAGGTAATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTAAATATCAGTTGAGGCAAACTATAAATCTCAGAGGTAATAAG  750

seq1  AAAGGAAGAGAGAAGAAAAATATACTATGTTATTAATGCTGGCATGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGAGAGAAGAAAAATATACTATGTTATTAATGCTGGCATGGTGG  800

seq1  TTCAGACACATGGTAGACAAATAACCATATGATGTGGAGGGAGGTTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACATGGTAGACAAATAACCATATGATGTGGAGGGAGGTTTACT  850

seq1  AGAAATATATAAGAAAGTAAAAAGTACCCCCAAAAACTCTAAAACAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATATAAGAAAGTAAAAAGTACCCCCAAAAACTCTAAAACAAAAT  900

seq1  AAATGAACAAACAAACATATGAAAACCTAGTATGTACTTGCCAACATCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACAAACAAACATATGAAAACCTAGTATGTACTTGCCAACATCTG  950

seq1  AAAGAAA-GAGACAAATAAGGAAAAGAAAGAGACAAATAAGGAAAAAGAA  999
      ||||||| ||||||| |||||||||||| ||||| ||| ||||||||| |
seq2  AAAGAAAGGAGACAATTAAGGAAAAGAAGGAGAC-AATTAGGAAAAAGGA  999

seq1  AATTTATACTTTTCTGACTCAGA-CCCCAGAAAGGGAGCAGACAAATCT-  1047
      || ||||||||||||||||| || ||||||||||||||||||  ||||| 
seq2  AAATTATACTTTTCTGACTCGGACCCCCAGAAAGGGAGCAGAACAATCTG  1049

seq1  GAGTACCATAATGA-CTCATAGGAACTACACTATGGGTTGTTAATTAGGG  1096
      ||||||||| |||| |||||||| |||||||||||||  |||||||||||
seq2  GAGTACCAT-ATGACCTCATAGG-ACTACACTATGGG-CGTTAATTAGGG  1096

seq1  G-AAGAAAAAGTGCAGTATCTCA-GTAAAGAATCT-GTGCC  1134
      | ||||||| ||||||||||||| || |||||||| |||||
seq2  GAAAGAAAAGGTGCAGTATCTCAGGTTAAGAATCTGGTGCC  1137


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