BAC Information

Click to search

BAC

Clone NameB6Ng01-194C21
ChromosomeX (Build37)
Map Location 70,808,877 - 70,809,976
singlet/doubletsinglet
Overlap geneAtp2b3
Upstream geneGabra3, Gabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn
Downstream geneLOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194C21.bB6Ng01-194C21.g
ACCGA016946GA016947
length9911,090
definitionB6Ng01-194C21.b B6Ng01-194C21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacccccaaagagcctgccatttgcaaccattgcacagcaggccc
ccacgaggaaagtcagcttaattgttcatgtgtttgttgtgtggttggtg
gtttttcaagaccgagacagggtttctctgtgagactgagacagggttaa
gtagctcttcctgtctgggaactcattctgaagaccaggctggccttgaa
ctcagagatctgcctgcctctgcctccagagtgctggaattaaacgtgtg
caccaccacctggcatctatgtatatttttgtgtgtaatctcaggccctt
atatctaagagagcaatcagaccattgaaagcacgtggagcccctaaaga
tgaatggataagggaaacaaatgatattggttctcaggactataactcca
atatcatagggcaaattgtagctagaaatatcaggaagcaaaatgctcaa
tgttttcattgtggtaaatttgggatttccaaaagaattataagactaaa
agattcagagctcaaaataacaggtacattgactctagtaattgtagaag
agaacaagtaggttctggttactatgagccacaaagggttccaggctaat
tgtagcttctgtggaaaggccaaacagtggtgatggattgctggtccaag
agagacagatgaggtaaccgcttgccatcatgaaatgaacagagggacct
gtcagctcaaggccccacagcaaaaaaatatgagccattttcctttggtc
agtcaggaagtaccaaccaagcaagaaattatgttttgctggggcatata
agtgaaaggatattttgctaaagtagacacgtgaaagaatgtttcgctga
agcagacatagggaaaggatgttttgccataaccaacatgtgaaaggatg
cgtgaaggagtataaatctgaccccacagacagtgggagttagagcattg
atttgcttggcctgccttgatattcctttgtaacaacattc
gaattcttttgtgtctctttcccatgggagcacacagacaaacccttgcc
cctctgtagccaagcaccaaaagctcactctggggaccctttcatttcaa
gcagcagtgaagcccagcccatccttcaggcagctggagtgggcctctat
actcgaatgtttactgtctcagtagttgaagataagatgccttctgactg
acgcaggccagcaaagatttgagcaccatatcgccagaggggcttcttcc
aggttctgatggagaatttggaaaccactggccacagcagttgcctcatt
tgaaagggattttgcaacacagaaacctttcacccccattgaggggaggg
agctagaccacaccaggtgaacccctgcagctttgccagagtccagcaag
gcatgctcatcatgtttccacaccttgacaaggagctggcacacagtctt
aagtttgatccattctcaagaagttaatcaatgctgagccacatcaccct
acttgggtttctagggagagtatattggcaatctttttgttgttgctgtt
tgacaagtgtgcacactggctccacactaggaaagacatcaattgtctag
ttggggctctgccataccctttctagaactacaggctaaaacccagggaa
acaagcttccaagaaatccctaaacaaaatgcaaccctggtctgaggccc
tgcaggtaggtgcagtgagtactgccgtatgggcagcagctgagagcttg
tggaatttattcaagccttccctaccctcaccactgctgcagctggcctt
ggctgctaggagggcaaggcaataggtagttcccatggtcctgcttctcc
tcacttcccacacttactgggccagaatgccaaggcacctgacagatccc
ttttctcaagaagattttgaactagtggttgtaaagagagaaagaatccg
atgagccttagtacaggagtatgggcagcccactagcttacagcctctgc
aggcatgccagtaagttttttctctagcaagaatagaagagaagtgtcag
gcattatctactgttgtttttggctattggtgatcaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_70808877_70809976
seq2: B6Ng01-194C21.g_63_1152

seq1  GAATTCTTTTGTGTCTCTTTCCCATGGGAGCACACAGACAAACCCTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTGTCTCTTTCCCATGGGAGCACACAGACAAACCCTTGCC  50

seq1  CCTCTGTAGCCAAGCACCAAAAGCTCACTCTGGGGACCCTTTCATTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAGCCAAGCACCAAAAGCTCACTCTGGGGACCCTTTCATTTCAA  100

seq1  GCAGCAGTGAAGCCCAGCCCATCCTTCAGGCAGCTGGAGTGGGCCTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTGAAGCCCAGCCCATCCTTCAGGCAGCTGGAGTGGGCCTCTAT  150

seq1  ACTCGAATGTTTACTGTCTCAGTAGTTGAAGATAAGATGCCTTCTGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAATGTTTACTGTCTCAGTAGTTGAAGATAAGATGCCTTCTGACTG  200

seq1  ACGCAGGCCAGCAAAGATTTGAGCACCATATCGCCAGAGGGGCTTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAGGCCAGCAAAGATTTGAGCACCATATCGCCAGAGGGGCTTCTTCC  250

seq1  AGGTTCTGATGGAGAATTTGGAAACCACTGGCCACAGCAGTTGCCTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGATGGAGAATTTGGAAACCACTGGCCACAGCAGTTGCCTCATT  300

seq1  TGAAAGGGATTTTGCAACACAGAAACCTTTCACCCCCATTGAGGGGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGATTTTGCAACACAGAAACCTTTCACCCCCATTGAGGGGAGGG  350

seq1  AGCTAGACCACACCAGGTGAACCCCTGCAGCTTTGCCAGAGTCCAGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACCACACCAGGTGAACCCCTGCAGCTTTGCCAGAGTCCAGCAAG  400

seq1  GCATGCTCATCATGTTTCCACACCTTGACAAGGAGCTGGCACACAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCATCATGTTTCCACACCTTGACAAGGAGCTGGCACACAGTCTT  450

seq1  AAGTTTGATCCATTCTCAAGAAGTTAATCAATGCTGAGCCACATCACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGATCCATTCTCAAGAAGTTAATCAATGCTGAGCCACATCACCCT  500

seq1  ACTTGGGTTTCTAGGGAGAGTATATTGGCAATCTTTTTGTTGTTGCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGTTTCTAGGGAGAGTATATTGGCAATCTTTTTGTTGTTGCTGTT  550

seq1  TGACAAGTGTGCACACTGGCTCCACACTAGGAAAGACATCAATTGTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGTGCACACTGGCTCCACACTAGGAAAGACATCAATTGTCTAG  600

seq1  TTGGGGCTCTGCCATACCCTTTCTAGAACTACAGGCTAAAACCCAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTCTGCCATACCCTTTCTAGAACTACAGGCTAAAACCCAGGGAA  650

seq1  ACAAGCTTCCAAGAAATCCCTAAACAAAATGCAACCCTGGTCTGAGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTCCAAGAAATCCCTAAACAAAATGCAACCCTGGTCTGAGGCCC  700

seq1  TGCAGGTAGGTGCAGTGAGTACTGCCGTATGGGCAGCAGCTGAGAGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTAGGTGCAGTGAGTACTGCCGTATGGGCAGCAGCTGAGAGCTTG  750

seq1  TGGAATTTATTCAAGCCTTCCCTACCCTCACCACTGCTGCAGCTGGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTATTCAAGCCTTCCCTACCCTCACCACTGCTGCAGCTGGCCTT  800

seq1  GGCTGCTAGGAGGGCAAGGCAATAGGTAGTTCCCATGGTCCTGCTTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTAGGAGGGCAAGGCAATAGGTAGTTCCCATGGTCCTGCTTCTCC  850

seq1  TCACTTCCCACACTTACTGGGCCAGAATGCCAAGGCACCTGACAGATCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCCACACTTACTGGGCCAGAATGCCAAGGCACCTGACAGATCCC  900

seq1  TTTTCTCAAGAAGATTTTGAACTAGTGGTTGGTAAAGAGAAGAAAGAATC  950
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TTTTCTCAAGAAGATTTTGAACTAGTGGTT-GTAAAGAG-AGAAAGAATC  948

seq1  CGATGAGCCTTAGTAACAGAGTATGGGCAAGCCCACTAGGCTTACAGCCT  1000
      |||||||||||||||   |||||||||| ||||||||| |||||||||||
seq2  CGATGAGCCTTAGTACAGGAGTATGGGC-AGCCCACTA-GCTTACAGCCT  996

seq1  CTGGCAGCCATGGCCAGTTAAGTTTTTCTCTAGCCAAAGAATTAGAAGAG  1050
      || |||| ||| |||||| |  ||||||||||||  ||||| ||||||||
seq2  CT-GCAGGCAT-GCCAGTAAGTTTTTTCTCTAGC--AAGAA-TAGAAGAG  1041

seq1  AAGGTGTCAGGCATTATCTACTGTTGTTTTTTGCTATTGTGGTTCAAGAC  1100
      || |||||||||||||||||||||||||||| |||||||  | |||||||
seq2  AA-GTGTCAGGCATTATCTACTGTTGTTTTTGGCTATTGGTGATCAAGAC  1090