BAC Information

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BAC

Clone NameB6Ng01-195H09
ChromosomeX (Build37)1 (Build37)
Map Location 104,996,184 - 104,997,244114,474,898 - 114,475,363
singlet/doubletsingletsinglet
Overlap gene2610002M06Rik
Upstream geneLOC100043263, Zcchc5, Gpr23, P2ry10, A630033H20Rik, Gpr174, LOC668502, LOC622613, LOC385404, Itm2a, 4933401B06Rik, Tbx22
Downstream geneGm732, Gm378, LOC668516, Gm379, Brwd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195H09.bB6Ng01-195H09.g
ACCGA017872GA017873
length1,073602
definitionB6Ng01-195H09.b B6Ng01-195H09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,996,184 - 104,997,244)(114,474,898 - 114,475,363)
sequence
ctccaacaaatgggaagtctgacttttataataataccatttgattcagc
attaatcttggatagtttacatggtaaggatattagaggaatcaggtcct
ggggaggatcataaattaggtgtaaactcactcaacagaaccaaaaagaa
tgtctttactccctgtttcagagagagataagcagggctagatgacatgg
cctcttttctttagaccatggggactggcctcttagagtgacccgtatca
taaaagggggtgcacattacccaacacaaacatgccactttaattcctcc
ataagtctgtagcatttttttgtgctacaattaagagttaagtagttact
agaaagatcgtattactgcagaactgtgaagtcacctgggtctttgaata
aagcaacgccagtttagaacactttccctaaaatatcttcccacaaaaac
tagagaccacaagaaaagttcagagaatttttttcacaaaaccagaagtc
agggaaaggattacatgcctcataaaatggagcaaattgtgcaaattaac
tgagaaagaaatagaaaatccctatttgttaatgctttttattcgaatgg
gcatgaaaattgtgtcctgcctaggatgatggagcattaagtgtgaaagc
tgtttactactgtggccaactgaggaagaaataatttaactacactccaa
atttttaactttgtactcaatatttgtctaaaactcagagtagatatttg
agataagaaatggctaaccagatttttatactgtgagtttaccttttagc
tttttggtagcttcacagcagaaattaatagaatctgttaatgtttgtct
tttcatttagtggccatcgctgcataatttgtcatttttaccaaaaaaca
gtggcaaaataggttttgaagcttgcttctttgaaaagggttcttgtttt
attatttaattgattaattattattagccctccacataatgttccttatg
taatcccaccatgtttagtataggatggttcccccctttcccatgcatcc
tctcccaatctcccattttatga
gaattctcacctttaggaataccgaatggcagagaagcacctgaaaaaaa
tgttcaacatccttaatcatcagggaaatacaaatcaaaaccacactgag
attctgcctcacaccagtcagaaaggctaagatcaaaaattcaggtgaca
gcagatgctggtgaggatgtggagaaggaggaacactcctccatttttgg
tgggattgcaagcttgtacaaccactctggaaatcagtctggcagtttct
cagaaaattggacatagtaccacctgaggatcctgcaatacctctcctgt
gcatatatccagaagatgtcccaacctgtaaataggacacatgctccact
atgttcatagcagccttatttataatagccagaagctggaaagaacccag
atgcccctcaacagaggaatggctacagaaaatgtggtacatttacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaattttttagg
caaatggatggacctggagggcatcatcctgagtgaggtaacacaatcat
aaaggaactcacacaatatgtactcactgaatgagtggatattagcccaa
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_104996184_104997244
seq2: B6Ng01-195H09.b_38_1110 (reverse)

seq1  TCATAAAATGGGAGA-TGAGAGAGGA-GCAGGGGAAA-GAGAGAAACAAC  47
      ||||||||||||||| || ||||||| ||| |||||| | | ||| || |
seq2  TCATAAAATGGGAGATTGGGAGAGGATGCATGGGAAAGGGGGGAACCATC  50

seq1  CAAAACTAAACATGTGAGAATTACATAAGGAAACATTATGT-GAAGGCTA  96
      | | ||||||||||   | ||||||||||| |||||||||| || |||||
seq2  CTATACTAAACATGGTGGGATTACATAAGG-AACATTATGTGGAGGGCTA  99

seq1  ATAATAAATAAATCAA-TAAATAATAAAACAAGAACCC-TTTCAAAGAAG  144
      ||||| ||| |||||| ||||||||||||||||||||| |||||||||||
seq2  ATAAT-AATTAATCAATTAAATAATAAAACAAGAACCCTTTTCAAAGAAG  148

seq1  CAAGCCTCAAAACCTA-TTTGCCACTG-TTTTTGGTAAAAATGACAAAAT  192
      ||||| |||||||||| |||||||||| |||||||||||||||||||| |
seq2  CAAGCTTCAAAACCTATTTTGCCACTGTTTTTTGGTAAAAATGACAAATT  198

seq1  ATGCAGCGATGGCCACTAAATGAAAAGACAAACATTAACAGATTCTATT-  241
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGCAGCGATGGCCACTAAATGAAAAGACAAACATTAACAGATTCTATTA  248

seq1  ATTTCTGCTGTGAAGCTACCAAAAAGCTAAAAGGTAAACTCACAGTAT-A  290
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTTCTGCTGTGAAGCTACCAAAAAGCTAAAAGGTAAACTCACAGTATAA  298

seq1  AAATCTGGTTAGCCATTTCTTATCTCAAATATCTACTCTGAGTTTTAGAC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGTTAGCCATTTCTTATCTCAAATATCTACTCTGAGTTTTAGAC  348

seq1  -AATATTGAGTACAAAGTTAAAAATTTGGAGTGTAGTT-AATTATTTCTT  388
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAATATTGAGTACAAAGTTAAAAATTTGGAGTGTAGTTAAATTATTTCTT  398

seq1  CCTCAGTTGGCC-CAGTAGTAAACAGCTTTCACACTTAATGCTCCATCAT  437
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTGGCCACAGTAGTAAACAGCTTTCACACTTAATGCTCCATCAT  448

seq1  CCTAGGCAGGACACAATTTTCATGCCCATTCGAAT-AAAAGCATTAACAA  486
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTAGGCAGGACACAATTTTCATGCCCATTCGAATAAAAAGCATTAACAA  498

seq1  ATAGGGATTTTCTATTTCTTTCTCAGTTAATTTGCACAATTTGCTCCATT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGATTTTCTATTTCTTTCTCAGTTAATTTGCACAATTTGCTCCATT  548

seq1  TTATGAGGCATGTAATCCTTTCCCTGACTTCTGGTTTTGTGAAAAAAATT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGGCATGTAATCCTTTCCCTGACTTCTGGTTTTGTGAAAAAAATT  598

seq1  CTCTGAACTTTTCTTGTGGTCTCTAGTTTTTGTGGGAAGATATTTTAGGG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACTTTTCTTGTGGTCTCTAGTTTTTGTGGGAAGATATTTTAGGG  648

seq1  AAAGTGTTCTAAACTGGCGTTGCTTTATTCAAAGACCCAGGTGACTTCAC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTCTAAACTGGCGTTGCTTTATTCAAAGACCCAGGTGACTTCAC  698

seq1  AGTTCTGCAGTAATACGATCTTTCTAGTAACTACTTAACTCTTAATTGTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCAGTAATACGATCTTTCTAGTAACTACTTAACTCTTAATTGTA  748

seq1  GCACAAAAAAATGCTACAGACTTATGGAGGAATTAAAGTGGCATGTTTGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAAAAATGCTACAGACTTATGGAGGAATTAAAGTGGCATGTTTGT  798

seq1  GTTGGGTAATGTGCACCCCCTTTTATGATACGGGTCACTCTAAGAGGCCA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTAATGTGCACCCCCTTTTATGATACGGGTCACTCTAAGAGGCCA  848

seq1  GTCCCCATGGTCTAAAGAAAAGAGGCCATGTCATCTAGCCCTGCTTATCT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCATGGTCTAAAGAAAAGAGGCCATGTCATCTAGCCCTGCTTATCT  898

seq1  CTCTCTGAAACAGGGAGTAAAGACATTCTTTTTGGTTCTGTTGAGTGAGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAAACAGGGAGTAAAGACATTCTTTTTGGTTCTGTTGAGTGAGT  948

seq1  TTACACCTAATTTATGATCCTCCCCAGGACCTGATTCCTCTAATATCCTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCTAATTTATGATCCTCCCCAGGACCTGATTCCTCTAATATCCTT  998

seq1  ACCATGTAAACTATCCAAGATTAATGCTGAATCAAATGGTATTATTATAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTAAACTATCCAAGATTAATGCTGAATCAAATGGTATTATTATAA  1048

seq1  AAGTCAGACTTCCCATTTGTTGGAG  1061
      |||||||||||||||||||||||||
seq2  AAGTCAGACTTCCCATTTGTTGGAG  1073

seq1: chr1_114474898_114475363
seq2: B6Ng01-195H09.g_197_664 (reverse)

seq1  TTTTGGGCTAATATCCACTTA-TCAGTGAGTACATATTGTGTGAGTTCCT  49
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  TTTTGGGCTAATATCCACTCATTCAGTGAGTACATATTGTGTGAGTTCCT  50

seq1  TTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATT  99
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATT  100

seq1  TGGCT-AGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTC  148
      || || |  |||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAAAAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTC  150

seq1  CATTGTGTAGATGTACCACATTTTCTTTATCCATTCCTCTGTTGAGGGGC  198
      ||||||||| |||||||||||||||| || ||||||||||||||||||||
seq2  CATTGTGTAAATGTACCACATTTTCTGTAGCCATTCCTCTGTTGAGGGGC  200

seq1  ATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAAC  250

seq1  ATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATAT  298
      |||||||||||||||||||  ||||  |||||| ||||||||||||||||
seq2  ATAGTGGAGCATGTGTCCTATTTACAGGTTGGGACATCTTCTGGATATAT  300

seq1  GCCCAGGAGAGGTATTGCTGGATCCTCTGGTAGTACTATGTCCAATTTTC  348
      || ||||||||||||||| |||||||| ||| ||||||||||||||||||
seq2  GCACAGGAGAGGTATTGCAGGATCCTCAGGTGGTACTATGTCCAATTTTC  350

seq1  TGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCC  398
      |||| ||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGAAACTGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCC  400

seq1  CACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCT  448
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  CACCAAAAATGGAGGAGTGTTCCTCCTTCTCCACATCCTCACCAGCATCT  450

seq1  GCTGTCACCTGAATTTTT  466
      ||||||||||||||||||
seq2  GCTGTCACCTGAATTTTT  468