BAC Information

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BAC

Clone NameB6Ng01-196J16
ChromosomeX (Build37)
Map Location 80,657,328 - 80,658,511
singlet/doubletsinglet
Overlap geneDmd
Upstream genenone
Downstream geneTsga8, LOC100042306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196J16.bB6Ng01-196J16.g
ACCGA018702GA018703
length1,1781,153
definitionB6Ng01-196J16.b B6Ng01-196J16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaagcca
gtagtcaacatcaaagtaaatggtgagaagctggaagtaatcccactaaa
atcagggactagacaaggctgctcactttctctctacctattcaacatag
tacttgaagtattagccagagcaattcaacaacaaaaagagatcaagggg
atataaattagaaaagagcaagtcaaaatatcactttttgcagatgatat
gataatatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctttacataaaatttactcaaacaag
tcaatggcctttctctacacaaaggataaacaggctgagaaagaaattag
ggaaacaacaccgttctcaatagtcacaaataatataaaatattttggtg
tgactctaactaaggaattgaaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggattaatatagtaaaaatagctatttggccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aatgaattagaaagagcaatctgtaaattcatctggattaacaaaaaacc
taggatagcaaaaactcttctcaaggacaaaagtacctctgttggaatca
ccatgcctgacctaaagctttactacagagcaactgtgataaaaactcca
tggtactggtatagtgagcagacaagtagaccaatggaatagaattgaag
acccagatatgaacccacacacctatggtcacttgatctttgacaaggga
gctaaaaccatccagtgaaaaaagacagcattttcaacaaatggtgctgg
cacactggtggttatcatgtagagattgcgaatgatccatcctatctctg
tactaagtcaattctagcctattatatagccagagctagaaagaaccaga
tgcccctcacagagatgatacaggaatgtgtacagtacccaatgatacta
ctcagcctataaaatggatatgaatcctagccaatgatgactggagcact
actctgagtgagttactcgattcccaaa
gaattctgagacacagatactagcaccctccaatactacaaatatggatg
agaaaccaaaatgacacagaacatgactcaggctagggttcttgattggg
ttcagtttctctgccagttaaagaattaaaaacaagaaagatttcaagca
taccaggtagtggcagagaagtatgaaaaggagcaaacaggatgtgttta
ttggagatgaggaccacgctcatggaacatgcacacagagtaaatgatgc
agaggggggactcagaaaactgaaaatcccagtcccttctcaaaggcttg
acttgaaagcttctaggagttttcttccactaatttaaggttggtcagtt
tgaagacagaacatttgattgacaagttctgatctagccttgatcttatg
aagtcagtccatcagtaaaaggcttgctggcaggaaaccaaagccaacaa
ggccttgattttaagctgtcagacttttgtttcaacacagatggatgaag
aagaagccagccatgttgttagtttgccatctttattacttcctttaacc
tacttctatgactactaggaggtctgtctaaaacctatcttttcatttca
acctcatacatcaccttagctactgttaggtgcctggggggcactgactg
aacttaactccttccacttgataaagggtgggcagtgagaggctcaatag
tcatggtgcctcaatgaaggactgatttaagccaccttgataaagcttaa
ctgatggcaatgatacagaaatgtagaggtagtgtgtattttcagagttt
gttatatgagggcaataatatctatagcgttaaaaagtaagactataagt
agtactatatttacaaataagagcatatttataaaaatagttgaggaagt
ttttcctcatgagatgaagaaaaaaaggagaaaacatccatgaatacttg
gcaggctttgtcataagtctaaattagactgatgatttctgcctcattat
ctatacactgaatgtatactgtttcagggcatttctgtagttttatagtc
atgagctctttaacaattgtgttggaagtggtgctgagtctctactactt
actcatggaacttagattatgaatattcttcaacattaggaactggacta
cag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_80657328_80658511
seq2: B6Ng01-196J16.g_66_1218

seq1  GAATTCTGAGACACAGATACTAGCACCCTCCAATACTACAAATATGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGACACAGATACTAGCACCCTCCAATACTACAAATATGGATG  50

seq1  AGAAACCAAAATGACACAGAACATGACTCAGGCTAGGGTTCTTGATTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAAAATGACACAGAACATGACTCAGGCTAGGGTTCTTGATTGGG  100

seq1  TTCAGTTTCTCTGCCAGTTAAAGAATTAAAAACAAGAAAGATTTCAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTCTCTGCCAGTTAAAGAATTAAAAACAAGAAAGATTTCAAGCA  150

seq1  TACCAGGTAGTGGCAGAGAAGTATGAAAAGGAGCAAACAGGATGTGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTAGTGGCAGAGAAGTATGAAAAGGAGCAAACAGGATGTGTTTA  200

seq1  TTGGAGATGAGGACCACGCTCATGGAACATGCACACAGAGTAAATGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATGAGGACCACGCTCATGGAACATGCACACAGAGTAAATGATGC  250

seq1  AGAGGGGGGACTCAGAAAACTGAAAATCCCAGTCCCTTCTCAAAGGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGGACTCAGAAAACTGAAAATCCCAGTCCCTTCTCAAAGGCTTG  300

seq1  ACTTGAAAGCTTCTAGGAGTTTTCTTCCACTAATTTAAGGTTGGTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAAGCTTCTAGGAGTTTTCTTCCACTAATTTAAGGTTGGTCAGTT  350

seq1  TGAAGACAGAACATTTGATTGACAAGTTCTGATCTAGCCTTGATCTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGAACATTTGATTGACAAGTTCTGATCTAGCCTTGATCTTATG  400

seq1  AAGTCAGTCCATCAGTAAAAGGCTTGCTGGCAGGAAACCAAAGCCAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTCCATCAGTAAAAGGCTTGCTGGCAGGAAACCAAAGCCAACAA  450

seq1  GGCCTTGATTTTAAGCTGTCAGACTTTTGTTTCAACACAGATGGATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGATTTTAAGCTGTCAGACTTTTGTTTCAACACAGATGGATGAAG  500

seq1  AAGAAGCCAGCCATGTTGTTAGTTTGCCATCTTTATTACTTCCTTTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCAGCCATGTTGTTAGTTTGCCATCTTTATTACTTCCTTTAACC  550

seq1  TACTTCTATGACTACTAGGAGGTCTGTCTAAAACCTATCTTTTCATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTATGACTACTAGGAGGTCTGTCTAAAACCTATCTTTTCATTTCA  600

seq1  ACCTCATACATCACCTTAGCTACTGTTAGGTGCCTGGGGGGCACTGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATACATCACCTTAGCTACTGTTAGGTGCCTGGGGGGCACTGACTG  650

seq1  AACTTAACTCCTTCCACTTGATAAAGGGTGGGCAGTGAGAGGCTCAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTCCTTCCACTTGATAAAGGGTGGGCAGTGAGAGGCTCAATAG  700

seq1  TCATGGTGCCTCAATGAAGGACTGATTTAAGCCACCTTGATAAAGCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGCCTCAATGAAGGACTGATTTAAGCCACCTTGATAAAGCTTAA  750

seq1  CTGATGGCAATGATACAGAAATGTAGAGGTAGTGTGTATTTTCAGAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGCAATGATACAGAAATGTAGAGGTAGTGTGTATTTTCAGAGTTT  800

seq1  GTTATATGAGGGCAATAATATCTATAGCGTTAAAAAGTAAGACTATAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGAGGGCAATAATATCTATAGCGTTAAAAAGTAAGACTATAAGT  850

seq1  AGTACTATATTTACAAATAAGAGCATATTTATAAAAATAGTTGAGGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTATATTTACAAATAAGAGCATATTTATAAAAATAGTTGAGGAAGT  900

seq1  TTTTCCTCATGAGATGAAGAAAAAAAGGGAAGAAAACCATCCAATGAATA  950
      ||||||||||||||||||||||||||||  |||||| ||||| |||||||
seq2  TTTTCCTCATGAGATGAAGAAAAAAAGG--AGAAAA-CATCC-ATGAATA  946

seq1  CTTGGCAGGCTTTGTCATAAGTCTAAATTAGACTGATGATTTTCCTGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||  ||| ||
seq2  CTTGGCAGGCTTTGTCATAAGTCTAAATTAGACTGATGATTT--CTG-CC  993

seq1  TCATTATCTAATTACACTGAAATGTATACTGTTTCCAGGGCCATTTCTGT  1050
      ||||||||||  ||||||| |||||||||||||| ||||| |||||||||
seq2  TCATTATCTA--TACACTG-AATGTATACTGTTT-CAGGG-CATTTCTGT  1038

seq1  AGTTTTATAGTTCCATGAGCCTCTTTAAACAAATTGTGTTTGGAAGGTGG  1100
      |||||||||||  |||||| ||||||||   ||||||| |||||||   |
seq2  AGTTTTATAGT--CATGAG-CTCTTTAA--CAATTGTG-TTGGAAG--TG  1080

seq1  GTGCTGAGTTTCTTCTACTACTACTTCATGGGGAACATTAAGGTATTAAT  1150
      ||||||||| ||| |||||  ||| ||||  ||||| |||   ||| |||
seq2  GTGCTGAGTCTCTACTACT--TAC-TCAT--GGAAC-TTAGATTATGAAT  1124

seq1  GAGTGAAATTCTTCAACATTATGA--TTGACTACAG  1184
             |||||||||||||| ||  | ||||||||
seq2  -------ATTCTTCAACATTAGGAACTGGACTACAG  1153