BAC Information

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BAC

Clone NameB6Ng01-196M02
ChromosomeX (Build37)
Map Location 154,261,782 - 154,435,192
singlet/doubletdoublet
Overlap geneCnksr2
Upstream geneLOC434885, Phex, Gm1947, Sms, LOC100041181, EG625253, Mbtps2, LOC100040239, LOC667460, LOC667465, Smpx, Klhl34
Downstream geneEG667483, LOC671033, LOC667487, LOC436243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196M02.bB6Ng01-196M02.g
ACCGA018809GA018810
length1,1441,168
definitionB6Ng01-196M02.b B6Ng01-196M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,261,782 - 154,262,928)(154,434,023 - 154,435,192)
sequence
gaattcaatagttaaaatggggagggattaaattttatcaaaatttaaaa
caagtgccaatacattcagacgcctctaagaaacagatttgtcgttcgtt
tgccatctctgattatgcagaccttcatggtttaagaaaacctcccccaa
cctgtaagattcctcaaccttcaaagtctctcatttcttcaacacccttc
cttaaacactcaaagagaagctgatctctatctgtttctgttaatgttct
accatcgccaacaagtgtatttaccaccgtctatctcttcagttactctg
gaacttgtcccgcctctccttcatggctaactcctcatgctccagtgaca
gaaaacaggacccctgttattgcaaatacagaatacttgccctgtgacca
ttaagaatcccatcccatagcacacgggccctagaatgaacaaagccttt
cccttcacactggcggctgcgattcacctgatgactaagcatcactttgg
tatgactctcagaagcacaactatcaactgtagaagaagagaatttcttc
tgttgaaggtaaaatagaaaaagggttaagagactttgagaaaaccattc
ttttcttttatggatctaacaaagggctaagagaatcttggaaatgttct
gccagaaacaggagggaaagaagacaacaacccgtataagaagcgcttct
ggccagtgaggagacaagatatgaaatgggtatgagagtgatgatgctgg
cagttgcctatggtgggatctgagagctattcttgggtgcatttagttat
tcttctgtaaaggaagattttataacctattacttttctaggtcccaaag
gacagggctctgtagctccccatcattttttaaccatcaagggattttct
ttttagtgttttctttatcctagaagaccagaagagtctaacagcatgac
atattaggatcccttcttgaactcaacatttacagtgcatttcattgtca
taggacaaaaattattgtagggtatttactgagcatataagacaggaaaa
gagagaagaggaggagaagtaggactgtacggaaaagagaagagaacggg
gagggaggaaaacaagaagccagtatttaagaatattcacatat
gaattcattgcaccttaaaaaagaagaaaaacacttaggcttaaaaagga
tggcacaaaacataagatgaaggaaatcaaaggttttcttaaatctttaa
gatagtggaattttaaatataaaaggaacccatgaatagaaattggctga
aacagactatttagttttgaaattagtgaagtagtgctatagtgatagaa
gcagaagtccagagtataggaagacagagccattacacttatgtagaata
aaggaaccctcgccctagaaatggttgtaaagtaaaagaaaatgtttgat
gtacataactctgaaagtaggggtagctgtttatattcattattctcaat
atttgtctgaaagcaaaacttagaaaatagataagggttttcagaaatta
ccaggagagattaaataaaaatgggaacctaacaatgaaagtatatctat
agcccacatgcagattgaaaagtccaaatggaatcaggttgtggcatagg
aggagttattgcttgctttccatctgttcattgattggtttatttctatt
ctgttctttctaattttattttgtaggtcttgatgactgtttgcagcagt
acattaagaactttgagagagagaagatcagtggagaccagctgctacgc
attacacatcaggagctagaagatctgggagtcagccgtattggccatca
ggagctgatcttggaagcagttgaccttttgtgtgcactggtaaggactg
aaactgactgacaaggagagatttaatgtccctcttccactggccactta
attgtctttttccttctcttcttttataaactagatataggtggagaaat
tgtcatttttaactacatatattgtttgtatacttctataaatttattac
attcatgctaaatgagaaagaggcttaaaagaaagatagtaatattacat
ttcaccatgtgaaagcaagttagagcttaactaagggtttcttaaaactt
ttcattgtgtctttgtgaattttacatcatacacaccaaccccactcatc
tcacaatcccttatacctgccctccacccttacaactcctgcttaagaga
aaacaatgtcattgtggaagcctgtatgatcacagtgtgtccacactttt
ttggcttggccaaatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_154261782_154262928
seq2: B6Ng01-196M02.b_42_1185

seq1  GAATTCAATAGTTAAAATGGGGAGGGATTAAATTTTATCAAAATTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGTTAAAATGGGGAGGGATTAAATTTTATCAAAATTTAAAA  50

seq1  CAAGTGCCAATACATTCAGACGCCTCTAAGAAACAGATTTGTCGTTCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCCAATACATTCAGACGCCTCTAAGAAACAGATTTGTCGTTCGTT  100

seq1  TGCCATCTCTGATTATGCAGACCTTCATGGTTTAAGAAAACCTCCCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTCTGATTATGCAGACCTTCATGGTTTAAGAAAACCTCCCCCAA  150

seq1  CCTGTAAGATTCCTCAACCTTCAAAGTCTCTCATTTCTTCAACACCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGATTCCTCAACCTTCAAAGTCTCTCATTTCTTCAACACCCTTC  200

seq1  CTTAAACACTCAAAGAGAAGCTGATCTCTATCTGTTTCTGTTAATGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACACTCAAAGAGAAGCTGATCTCTATCTGTTTCTGTTAATGTTCT  250

seq1  ACCATCGCCAACAAGTGTATTTACCACCGTCTATCTCTTCAGTTACTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCGCCAACAAGTGTATTTACCACCGTCTATCTCTTCAGTTACTCTG  300

seq1  GAACTTGTCCCGCCTCTCCTTCATGGCTAACTCCTCATGCTCCAGTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTCCCGCCTCTCCTTCATGGCTAACTCCTCATGCTCCAGTGACA  350

seq1  GAAAACAGGACCCCTGTTATTGCAAATACAGAATACTTGCCCTGTGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGACCCCTGTTATTGCAAATACAGAATACTTGCCCTGTGACCA  400

seq1  TTAAGAATCCCATCCCATAGCACACGGGCCCTAGAATGAACAAAGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATCCCATCCCATAGCACACGGGCCCTAGAATGAACAAAGCCTTT  450

seq1  CCCTTCACACTGGCGGCTGCGATTCACCTGATGACTAAGCATCACTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACACTGGCGGCTGCGATTCACCTGATGACTAAGCATCACTTTGG  500

seq1  TATGACTCTCAGAAGCACAACTATCAACTGTAGAAGAAGAGAATTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTCTCAGAAGCACAACTATCAACTGTAGAAGAAGAGAATTTCTTC  550

seq1  TGTTGAAGGTAAAATAGAAAAAGGGTTAAGAGACTTTGAGAAAACCATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGGTAAAATAGAAAAAGGGTTAAGAGACTTTGAGAAAACCATTC  600

seq1  TTTTCTTTTATGGATCTAACAAAGGGCTAAGAGAATCTTGGAAATGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTATGGATCTAACAAAGGGCTAAGAGAATCTTGGAAATGTTCT  650

seq1  GCCAGAAACAGGAGGGAAAGAAGACAACAACCCGTATAAGAAGCGCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAACAGGAGGGAAAGAAGACAACAACCCGTATAAGAAGCGCTTCT  700

seq1  GGCCAGTGAGGAGACAAGATATGAAATGGGTATGAGAGTGATGATGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGAGGAGACAAGATATGAAATGGGTATGAGAGTGATGATGCTGG  750

seq1  CAGTTGCCTATGGTGGGATCTGAGAGCTATTCTTGGGTGCATTTAGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCTATGGTGGGATCTGAGAGCTATTCTTGGGTGCATTTAGTTAT  800

seq1  TCTTCTGTAAAGGAAGATTTTATAACCTATTACTTTTCTAGGTCCCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTAAAGGAAGATTTTATAACCTATTACTTTTCTAGGTCCCAAAG  850

seq1  GACAGGGCTCTGTAGCTCCCCATCATTTTTTAACCATCAAGGGATTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCTCTGTAGCTCCCCATCATTTTTTAACCATCAAGGGATTTTCT  900

seq1  TTTTAGTGTTTTCTTTATCCTAGAAGACCAGAAGAGTCTAACAGCATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGTTTTCTTTATCCTAGAAGACCAGAAGAGTCTAACAGCATGAC  950

seq1  ATATTAGGAT-CCTTCTTGAACTCAACATTTACAGTGGCATTTCATTGTC  999
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  ATATTAGGATCCCTTCTTGAACTCAACATTTACAGT-GCATTTCATTGTC  999

seq1  ATAGGACAAAAA-TATTGTAGGGTATTTACTGAGCATATAAGACAGGAAA  1048
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAGGACAAAAATTATTGTAGGGTATTTACTGAGCATATAAGACAGGAAA  1049

seq1  AGAGAGAAGAAGAGGAGGAAGTAGGACTGTAAGGGAAA-AGAAGAGGAGA  1097
      |||||||||| ||||| |||||||||||||| || ||| |||||||    
seq2  AGAGAGAAGAGGAGGA-GAAGTAGGACTGTACGGAAAAGAGAAGAG----  1094

seq1  AAGGGGGAGGGAGGAAACACAAGAAGCAGGTATTTAAG-ATATTCACATA  1146
      || |||||||||||||| |||||||||  ||||||||| |||||||||||
seq2  AACGGGGAGGGAGGAAA-ACAAGAAGCCAGTATTTAAGAATATTCACATA  1143

seq1  T  1147
      |
seq2  T  1144

seq1: chrX_154434023_154435192
seq2: B6Ng01-196M02.g_66_1233 (reverse)

seq1  AACATTTG--CAAGC--AAAAAGTGTGGACACACTGTGATACACTACA-G  45
      ||||||||  |||||  ||||||||||||||||||||||| || |||| |
seq2  AACATTTGGCCAAGCCAAAAAAGTGTGGACACACTGTGAT-CA-TACAGG  48

seq1  CTTCCACAATGACATTTGTTTCTCTTAGGCAGGGAGGTTGTAAGGGTGGA  95
      ||||||||||||||||  ||||||||| |||||   ||||||||||||||
seq2  CTTCCACAATGACATTGTTTTCTCTTAAGCAGG--AGTTGTAAGGGTGGA  96

seq1  GGGCAGGTATAAGGGAATTGTGAGATGAGTGGGGTTGGTGTGTATGATGT  145
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTATAAGGG-ATTGTGAGATGAGTGGGGTTGGTGTGTATGATGT  145

seq1  AAAATTCACAAAGACACAATGAAAAGTTTTAAGAAACCCCTTAGTTAAGC  195
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAATTCACAAAGACACAATGAAAAGTTTTAAGAAA-CCCTTAGTTAAGC  194

seq1  TCTAACTTGCTTTTCACATGGTGAAATGTAATATTACTATCTTTCTTTTA  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTGC-TTTCACATGGTGAAATGTAATATTACTATCTTTCTTTTA  243

seq1  AGCCTCTTTCTCATTTAGCATGAATGTAATAAATTTATAGAAGTATACAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTTCTCATTTAGCATGAATGTAATAAATTTATAGAAGTATACAA  293

seq1  ACAATATATGTAGTTAAAAATGACAATTTCTCCACCTATATCTAGTTTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATATGTAGTTAAAAATGACAATTTCTCCACCTATATCTAGTTTAT  343

seq1  AAAAGAAGAGAAGGAAAAAGACAATTAAGTGGCCAGTGGAAGAGGGACAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAGAAGGAAAAAGACAATTAAGTGGCCAGTGGAAGAGGGACAT  393

seq1  TAAATCTCTCCTTGTCAGTCAGTTTCAGTCCTTACCAGTGCACACAAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCTCCTTGTCAGTCAGTTTCAGTCCTTACCAGTGCACACAAAAG  443

seq1  GTCAACTGCTTCCAAGATCAGCTCCTGATGGCCAATACGGCTGACTCCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTGCTTCCAAGATCAGCTCCTGATGGCCAATACGGCTGACTCCCA  493

seq1  GATCTTCTAGCTCCTGATGTGTAATGCGTAGCAGCTGGTCTCCACTGATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTAGCTCCTGATGTGTAATGCGTAGCAGCTGGTCTCCACTGATC  543

seq1  TTCTCTCTCTCAAAGTTCTTAATGTACTGCTGCAAACAGTCATCAAGACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCAAAGTTCTTAATGTACTGCTGCAAACAGTCATCAAGACC  593

seq1  TACAAAATAAAATTAGAAAGAACAGAATAGAAATAAACCAATCAATGAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATAAAATTAGAAAGAACAGAATAGAAATAAACCAATCAATGAAC  643

seq1  AGATGGAAAGCAAGCAATAACTCCTCCTATGCCACAACCTGATTCCATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAAGCAAGCAATAACTCCTCCTATGCCACAACCTGATTCCATTT  693

seq1  GGACTTTTCAATCTGCATGTGGGCTATAGATATACTTTCATTGTTAGGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTCAATCTGCATGTGGGCTATAGATATACTTTCATTGTTAGGTT  743

seq1  CCCATTTTTATTTAATCTCTCCTGGTAATTTCTGAAAACCCTTATCTATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTATTTAATCTCTCCTGGTAATTTCTGAAAACCCTTATCTATT  793

seq1  TTCTAAGTTTTGCTTTCAGACAAATATTGAGAATAATGAATATAAACAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTTTTGCTTTCAGACAAATATTGAGAATAATGAATATAAACAGC  843

seq1  TACCCCTACTTTCAGAGTTATGTACATCAAACATTTTCTTTTACTTTACA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTACTTTCAGAGTTATGTACATCAAACATTTTCTTTTACTTTACA  893

seq1  ACCATTTCTAGGGCGAGGGTTCCTTTATTCTACATAAGTGTAATGGCTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCTAGGGCGAGGGTTCCTTTATTCTACATAAGTGTAATGGCTCT  943

seq1  GTCTTCCTATACTCTGGACTTCTGCTTCTATCACTATAGCACTACTTCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTATACTCTGGACTTCTGCTTCTATCACTATAGCACTACTTCAC  993

seq1  TAATTTCAAAACTAAATAGTCTGTTTCAGCCAATTTCTATTCATGGGTTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAAAACTAAATAGTCTGTTTCAGCCAATTTCTATTCATGGGTTC  1043

seq1  CTTTTATATTTAAAATTCCACTATCTTAAAGATTTAAGAAAACCTTTGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATTTAAAATTCCACTATCTTAAAGATTTAAGAAAACCTTTGAT  1093

seq1  TTCCTTCATCTTATGTTTTGTGCCATCCTTTTTAAGCCTAAGTGTTTTTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCATCTTATGTTTTGTGCCATCCTTTTTAAGCCTAAGTGTTTTTC  1143

seq1  TTCTTTTTTAAGGTGCAATGAATTC  1170
      |||||||||||||||||||||||||
seq2  TTCTTTTTTAAGGTGCAATGAATTC  1168